mRNA_H-elongata_contig10053.56.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: D8LQD6_ECTSI (HIT-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD6_ECTSI) HSP 1 Score: 277 bits (708), Expect = 7.940e-80 Identity = 159/333 (47.75%), Postives = 198/333 (59.46%), Query Frame = 2 Query: 926 IMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFF----PEVDLSSNSKHISPTTT---------------QSPTPKMQEPTQGLDIANAAVGVPEVEL-------------ECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVESEGVGFRGYAESLREDVLVLCRDHRKLFCAFQDAWSMLNAAGRALVPSNMAAEPGGLKIGQGRVGAEF--GGNKRGRKKAAKELGKVEKRVGYFLSWALSCGERATPVM 1822 ++DLLTEEE+ RF RE+ASGRLG+LI PW+PWWTQA VQE+ P G P VD + KH + ++ + TP+ + + G C RH+F+ L QAP F+T+ +R PSP+LPALATD+AYAYV T+RLYNGCWC DPVGASLAL+GASPVL+DGATPST +AL+A R VE E GFRGYAESL++DVL +C D RKL CAFQDAW ML AAGR L PS + F ++ ++KAA+ELGKVEKR+GYFL WA + GE +P M Sbjct: 218 MLDLLTEEEKGRFFREVASGRLGKLIVPWVPWWTQAAGVQEVAPITAGGRTSHSLPPPVVDPCRHHKHHAVCSSFATPPSGAPXXXXXXRPSTPEQXXXXXXSEFPASRSGXXXXXXXXXXXXXXXXXXXSCTRHSFAALLSQAFQAPGFTTINAREPSPTLPALATDLAYAYVLTSRLYNGCWCSDPVGASLALVGASPVLKDGATPSTAGEALAACVERAVEGERCGFRGYAESLQQDVLQVCSDPRKLICAFQDAWVMLEAAGRTLAPS---------------MAKSFLPAAGRKAQRKAARELGKVEKRIGYFLLWARTHGEEVSPQM 535
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A6H5KU08_9PHAE (HIT-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU08_9PHAE) HSP 1 Score: 273 bits (697), Expect = 1.190e-76 Identity = 159/332 (47.89%), Postives = 193/332 (58.13%), Query Frame = 2 Query: 926 IMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFF----PEVDLSSNSKHISPTTTQSPTPKMQEP---------------------------TQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVESEGVGFRGYAESLREDVLVLCRDHRKLFCAFQDAWSMLNAAGRALVPSNMAAEPGGLKIGQGRVGAEF--GGNKRGRKKAAKELGKVEKRVGYFLSWALSCGERATPVM 1822 I+ LLTEEE+ RF RE+ASGRLG+LI PW+PWWTQA VQE+ P G P VD + KH + ++ TP P C RH+F+ L QAP FST+ +R PSP+LPALATD+AYAYV T+RLYNGCWC DPVGASLAL+GASPVL+DGATP+T +AL+A R +E E GFRGYAESLR+DVL +C D RKL CAFQDAW ML AAGR L PS + F ++ ++KAA+ELGKVEKR+GYFL WA + GE +P M Sbjct: 381 ILGLLTEEEKGRFFREVASGRLGKLIVPWVPWWTQAAGVQEVAPITAGGRTSHSLPPPVVDPCRHHKHHAVCSSFG-TPSSGAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTRHSFAALLSQAFQAPGFSTINAREPSPTLPALATDLAYAYVLTSRLYNGCWCSDPVGASLALVGASPVLKDGATPATAGEALAACVERALEGERSGFRGYAESLRQDVLQVCSDPRKLICAFQDAWVMLEAAGRTLAPS---------------MAKSFLPAAGRKAQRKAARELGKVEKRIGYFLLWARTHGEEVSPQM 696
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A835ZEE4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE4_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.740e-13 Identity = 82/299 (27.42%), Postives = 118/299 (39.46%), Query Frame = 2 Query: 920 ERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACR--VQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTL---SHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVESEGVGFRGYAESLR----EDVLVLCRDHRKLFCAFQDAWSMLNAAGRALVPSNMAAEPGGLKIGQGRVGAEFGGNKRGRKKAAKELGKVEKRVGYFLSWA 1789 E ++ L++EER+ F+R + SG L R + W PWW + VQE+PP + P Q+P +G V + + C RH + L +H++ + L S SP LP L DV +Y RLYNGCWC DP+ A+ ++ S VL A ++V A+ + R G+ +G A L +D L L A D ++ AA EPG K K L V KR+ YF +WA Sbjct: 86 ELSLEHLSKEERAAFMRAVQSGVLTRYVQVWEPWWESPAKLLVQELPPTTSAAQP--------------------------QQPAEGT------YAVVDTDTTCSRHAAAQLLQAAHISLASDGLR-LTSPAASPLLPHLVLDVLCSYAALMRLYNGCWCCDPLQAAADMLQLSAVLSKDARHASVALAMESCHLRQQALTGIA-KGNATQLSIRALKDALSLLSTQVVTQTALLDLMALFAAA---------LQEPGAKK--------------------KKTLALVAKRLEYFAAWA 321
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A0A0KV24_CUCSA (HIT-type domain-containing protein n=2 Tax=Cucumis TaxID=3655 RepID=A0A0A0KV24_CUCSA) HSP 1 Score: 80.1 bits (196), Expect = 3.990e-12 Identity = 77/254 (30.31%), Postives = 110/254 (43.31%), Query Frame = 2 Query: 887 EEQNQPLGVDDERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQ-ACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVES--EGVGFRGYAESLREDV-LVLCRDHRKLFCAFQDAWSMLNAAGRAL 1636 EE + + D+ D L+EEE+ RFLR +ASG L ++I PW WW + + R + E G+P V L + + + T+++ E Q I A P+ L P S L + PSP L D+ Y+Y FT RLYNG W D G++L ++ S VL P TV +ALS+ + VG SL +DV +L L C D ++ A R L Sbjct: 107 EETTEKVLAGDQLSFDDLSEEEKKRFLRAMASGELSKMIEPWEAWWMKPSARTISLSKE---GTPL---VQLHAAERMTTSLTSET------EVMQSSGIPQA----PDTPL-----------------PPLSKLSTAEPSPLLAVHLIDIIYSYCFTLRLYNGDWQSDATGSALVVLSISSVLGQNGKPETVLEALSSCLEQTCSPAYRHVGGLQLGLSLIDDVSTLLSLGCPALVCLLCDLQRLIQAGERDL 327
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A5A7SW59_CUCME (Aquarius n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7SW59_CUCME) HSP 1 Score: 80.1 bits (196), Expect = 1.580e-11 Identity = 72/243 (29.63%), Postives = 97/243 (39.92%), Query Frame = 2 Query: 917 DERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVES--EGVGFRGYAESLREDVLVLCR-DHRKLFCAFQDAWSMLNAAGRAL 1636 D+ D L+EEE+ RFLR +ASG L ++I PW WW + P S SK +P +M A + G+P + P P S L + PSP L D+ Y+Y FT RLYNG W D G++L ++ S VL P TV +ALS+ + VG SL +DV L L C D ++ A R L Sbjct: 1739 DQISFDDLSEEEKKRFLRAMASGELSKMIEPWEAWWMK------------------PSARTISLSKEGTPLVQLHGAERMTTSLTSGTEAMQSSGIPRAP-DAP-------------LPPLSKLSTAEPSPLLAVHLVDIIYSYCFTLRLYNGDWQSDATGSALVVLSVSSVLGQNGKPETVLEALSSCLEQTCSPAYRHVGGLQLGLSLIDDVTTLLSLGCPALLCLLCDLQRLIQAGERDL 1949
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: E5GCK6_CUCME (Aquarius n=1 Tax=Cucumis melo subsp. melo TaxID=412675 RepID=E5GCK6_CUCME) HSP 1 Score: 80.1 bits (196), Expect = 1.610e-11 Identity = 72/243 (29.63%), Postives = 97/243 (39.92%), Query Frame = 2 Query: 917 DERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVES--EGVGFRGYAESLREDVLVLCR-DHRKLFCAFQDAWSMLNAAGRAL 1636 D+ D L+EEE+ RFLR +ASG L ++I PW WW + P S SK +P +M A + G+P + P P S L + PSP L D+ Y+Y FT RLYNG W D G++L ++ S VL P TV +ALS+ + VG SL +DV L L C D ++ A R L Sbjct: 1952 DQISFDDLSEEEKKRFLRAMASGELSKMIEPWEAWWMK------------------PSARTISLSKEGTPLVQLHGAERMTTSLTSGTEAMQSSGIPRAP-DAP-------------LPPLSKLSTAEPSPLLAVHLVDIIYSYCFTLRLYNGDWQSDATGSALVVLSVSSVLGQNGKPETVLEALSSCLEQTCSPAYRHVGGLQLGLSLIDDVTTLLSLGCPALLCLLCDLQRLIQAGERDL 2162
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: T0Q3L4_SAPDV (HIT-type domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q3L4_SAPDV) HSP 1 Score: 72.4 bits (176), Expect = 1.060e-9 Identity = 56/184 (30.43%), Postives = 81/184 (44.02%), Query Frame = 2 Query: 929 MDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSA 1480 +D LT ER++FLRE+A GRLG+LIA W PWWT + P ++ + +++H Q T D + G EV + P+H +T S L + P SP L ++ +AY +T R YNG W D AS L+ S VL T++ +A Sbjct: 146 LDALTPNERAQFLREVADGRLGKLIALWTPWWTTS-------PAAYAAATH--------SARH-------------QLITAVDDDEDDIDGDVEVPPQHPKHILTT--RRAKALEPISALHASPNSPVLCCNLFELLFAYAYTLRTYNGDWTADVAEASATLVALSAVLHSQRVYMTIDDVRTA 299
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A067CML1_SAPPC (HIT-type domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CML1_SAPPC) HSP 1 Score: 69.3 bits (168), Expect = 1.010e-8 Identity = 56/190 (29.47%), Postives = 84/190 (44.21%), Query Frame = 2 Query: 917 DERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWTQACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQA--PVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSA 1480 D +D LT +ER++FLRE+A GRLG+LIA W PWWT + P ++ + + +++H Q + + P+H L+ +A P+ S L + P P L ++ +AY +T R YNG W D + AS LI SPVL T+E +A Sbjct: 142 DALTLDALTPDERAQFLREVADGRLGKLIALWTPWWTSS-------PAAYAAA--------TKSARH-----------------QLIVAIDDEXXXXXXXXGLPQHPKQLLTTARAKALEPI-SALHAAPNGPVLRCNLFELLFAYAYTLRDYNGDWTTDVLEASATLIALSPVLHSQRVYLTIEDVRAA 298
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Match: A0A1D2A295_AUXPR (Uncharacterized protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A295_AUXPR) HSP 1 Score: 67.4 bits (163), Expect = 2.050e-8 Identity = 76/292 (26.03%), Postives = 109/292 (37.33%), Query Frame = 2 Query: 920 ERIMDLLTEEERSRFLREIASGRLGRLIAPWIPWWT-QACRVQEIPPEVHSGSPFFPEVDLSSNSKHISPTTTQSPTPKMQEPTQGLDIANAAVGVPEVELECPRHTFSTLSHLTNQAPVFSTLCSRPPSPSLPALATDVAYAYVFTARLYNGCWCGDPVGASLALIGASPVLRDGATPSTVEQALSASQRRVVESEGVGFRGYAESLREDVLVLCRDHRK-LFCAFQDAWSMLNAAGRALVPSNMAAEPGGLKIGQGRVGAEFGGNKRGRKKAAKELGKVEKRVGYFLSWA 1789 E + + LT E + F + S +GR++ PW+PWWT +A R + P G +V S P P GL P LS LT PPSP LP + + YAY +T R +NG D +GA L+ P +D PS V V G + ++ D + L R R + A DA M + A A A P ++ +GRK ++L VEK++ +FL+WA Sbjct: 8 EVVEEDLTPAELAAFHAALESEEVGRMVQPWVPWWTLEAARDVRLGPR---GLSLIEDVSESE--------------PSSSRPQPGLPPP-------------PSQPLLPLSALTK----------NPPSPLLPCILPQLLYAYCYTLRRHNGEPDVDALGAGETLLMLWPGTKDPPPPSPVHALRQTLADAVGSGRGGAPHAFFVAVVGDAVQLLRLGRSAVLLALVDAARMASRARSAAEDLEDDAAPERMR--------------QGRKAFVRQLAAVEKKLVFFLAWA 245 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10053.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10053.56.1 >prot_H-elongata_contig10053.56.1 ID=prot_H-elongata_contig10053.56.1|Name=mRNA_H-elongata_contig10053.56.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=478bp MVQLLRKVRESGKAQDGSDEPWRFSEHRDASDADPGVPDNWPGGREEEEEback to top mRNA from alignment at H-elongata_contig10053:5406..8350- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10053.56.1 ID=mRNA_H-elongata_contig10053.56.1|Name=mRNA_H-elongata_contig10053.56.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2945bp|location=Sequence derived from alignment at H-elongata_contig10053:5406..8350- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10053:5406..8350- >mRNA_H-elongata_contig10053.56.1 ID=mRNA_H-elongata_contig10053.56.1|Name=mRNA_H-elongata_contig10053.56.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2868bp|location=Sequence derived from alignment at H-elongata_contig10053:5406..8350- (Himanthalia elongata Himel1 dioecious)back to top |