mRNA_H-elongata_contig10053.55.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10053.55.1
Unique NamemRNA_H-elongata_contig10053.55.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A6H5KQ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ72_9PHAE)

HSP 1 Score: 387 bits (994), Expect = 1.010e-130
Identity = 198/267 (74.16%), Postives = 228/267 (85.39%), Query Frame = 2
Query:   50 MSGPMDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARAR--AEADDAGCALAGGLSKGLCYVNRKLQEAPSIQT---RALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAPSIFLQQAAYLTGGLYLEHREVGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLGV 835
            MS PMDEEEPSLL+I++DAS AFWTKRE +RR++ Q+  S + KLS+FQDTVEA L+FVE+YLM+HRRNE+C VACTA+ S+IIFPT AMERE RSLG GSVSTKEFQ+CLW+GL  VV+   A   A   D GCALAG LSKGLCYVN+K++E+ SIQ    RALV+SG+PDVPETYNSVMNAIFSAQKAGVLVDCAVLG  S FLQQAAYLTGGLYLEH+ VG+ QY+FATFLPSQSCRKYLKLR QQSVDFRAACFCHK+V+ +
Sbjct:    1 MSRPMDEEEPSLLLIILDASSAFWTKREAVRRRQKQRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAADAAGGGDEGCALAGSLSKGLCYVNKKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDI 267          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: D7FYW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW3_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 6.220e-99
Identity = 156/212 (73.58%), Postives = 181/212 (85.38%), Query Frame = 2
Query:   50 MSGPMDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEAD--DAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAPSIFLQQAAYLTG 679
            MS PMDEEEPSLL+I++DAS AFWTKRE +RR++ ++  S + KLS+FQDTVEA L+FVE+YLM+HRRNE+C VACTA+ S+IIFPT AMERE R+LG GSVSTKEFQDCLW+GL  VV+   A  EA   D GCALAG LSKGLCY+NRK++E+ SIQ RALV+SG+PDVPETYNSVMNAIFSAQKAGVLVDCAVLG  S FLQQAAYLTG
Sbjct:    1 MSRPMDEEEPSLLLIILDASSAFWTKREAVRRRQKERPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRTLGRGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYINRKMRESSSIQARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTG 212          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A835ZC01_9STRA (Putative general transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC01_9STRA)

HSP 1 Score: 235 bits (599), Expect = 1.600e-71
Identity = 116/260 (44.62%), Postives = 175/260 (67.31%), Query Frame = 2
Query:   68 EEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVD----GARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAPSIFLQQAAYLTGGLYLEHREVGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLGV 835
            +E+PSLL++V DAS   W  ++ +  Q           + TFQ T+EA+++F+++YL++HRRN++ VVAC   GS ++FPT A+E+++ SL  G VS+K  Q C+ +GL  ++     G  +   A  +   +A  LS+ LC+ +RK+ E PS+QTR LVV   PD PE+YN+VMN IFSAQKA + VDC  +G  S+F+QQAA +TGG+Y   +E  ++Q L    LPSQ+CRKYL+ + Q++VDFRAACFCH++++ +
Sbjct:    2 DEDPSLLVVVFDASQGAWAAKDALAAQ--------GSTVGTFQGTLEAMMVFLQSYLLMHRRNDIAVVACGEAGSRMVFPTPAIEKDNVSLATGGVSSKRVQSCIVDGLRELMSASACGTASVQPAVSSKAPIAKALSQALCFTHRKITENPSVQTRLLVVQAGPDAPESYNAVMNCIFSAQKAQIPVDCLCVGPDSVFMQQAADVTGGVYCHVQEPNVLQQLLTLILPSQACRKYLRTKGQETVDFRAACFCHRRLIEI 253          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A5D6XQC8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC8_9STRA)

HSP 1 Score: 164 bits (414), Expect = 8.930e-44
Identity = 104/280 (37.14%), Postives = 151/280 (53.93%), Query Frame = 2
Query:   29 TSDRCSIMSGPM----DEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECV----VDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLY---LEHREVGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 832
            TS    I S P     D     LL++V+D +  +W      R   D          S FQ  V + L+FV  YL++HR N + VVA  A  + +++P    + E +   G +  + +    + + L  +    +D ++  A A      +A  LS+ LC++NR ++E   ++ R LV+  +PDV + Y S+MN IFSAQK  V VD  VL +  S FLQQAAYLTGG+Y   ++H   G++QYL + +LP  S RK LKL  Q SVDFRA CFCHK+V+ 
Sbjct:    7 TSLAARINSAPSLQHSDAVSEGLLVLVLDTNPRYWFAEGQARDGGD----------SAFQQLVASTLVFVNAYLLLHRSNRIVVVAAHAGRAEMLYP----DAEQQDTSGSAEQSAKVNTSVLQKLRALGNAPIDASKPNATA------IAASLSRALCFINRAIREQSDLRPRVLVIQKSPDVAQHYISIMNGIFSAQKKSVAVDACVLASEHSSFLQQAAYLTGGIYYKPIDHS--GLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKEVIS 264          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: K3WG36_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG36_GLOUD)

HSP 1 Score: 161 bits (408), Expect = 7.660e-43
Identity = 98/259 (37.84%), Postives = 140/259 (54.05%), Query Frame = 2
Query:   62 MDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHRE-VGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 832
            +D  +  LL++V+D +  +W   E       Q           FQ  V + L+FV +YL++HR N + ++A  A  + +++P         S    +    +    L    E  VD A+  A A      +A  +S+ LC++NR + E   ++ R LV+  +PDV E Y S+MN IFSAQK GV VD  VL    S FLQQAAYLTGG+Y +  +  G++QYL + +LP  S RK LKL  Q SVDFRA CFCHK+V+ 
Sbjct:   26 IDVVQEGLLVLVVDTNPQYWFVNEQRSGGGPQ----------AFQQLVASTLVFVNSYLLLHRSNRIVIIAAHAGKAEMLYPDPNQGDTSGSAEQSAKVNAKVMQKLQALSELPVDPAKPNATA------IAASISRALCFINRAINEQSDLRPRILVIQKSPDVSEHYISIMNGIFSAQKKGVAVDACVLARDQSSFLQQAAYLTGGIYYKPNDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKRVIS 268          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A662YF30_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YF30_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.460e-42
Identity = 88/221 (39.82%), Postives = 132/221 (59.73%), Query Frame = 2
Query:  185 STFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAG---CALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHREVG-IVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 832
            + FQ  + + L+FV +YL++HR N + ++A  A  S++++P    + +     G +    +    +   L+ + D     AE D A     A+A  LS+ LC++NR + + P ++ R LV+  APDV E Y ++MN IFSAQK  V VD  +L A  S F+QQAAYLTGG+Y +  + G ++QYL + +LP  S RK LKL  Q SVDFRA CFCH++V+ 
Sbjct:   51 TAFQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYP----DPDQADTSGSAEQAAKVNAGVMRRLQELGD-----AELDPAKPNRTAIAASLSRSLCFINRAINDQPDLRPRILVIQKAPDVSEHYIAIMNGIFSAQKKSVAVDACILSAEHSSFMQQAAYLTGGIYYKPNDAGGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVIS 262          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A3M6VU71_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VU71_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.670e-42
Identity = 86/216 (39.81%), Postives = 131/216 (60.65%), Query Frame = 2
Query:  191 FQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHRE-VGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 832
            FQ  + + L+FV +YL++HR N + ++A  A  S++++P  A    H    G +  + +    + + L+ + D      + +    A+A  LS+ LC++NR + E P ++ R LVV  +PDV E Y ++MN IFSAQK  V VD  +L +  S F+QQAAYLTGG+Y +  +  G++QYL + +LP  S RK LKL  Q SVDFRA CFCH++V+ 
Sbjct:   43 FQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPNPA----HDDTSGSAEQSAKVNAVVMQRLQELSDTPMDCTKPNRT--AIAASLSRALCFINRAMNEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILASEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVIS 252          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: M4BTB8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTB8_HYAAE)

HSP 1 Score: 159 bits (402), Expect = 4.140e-42
Identity = 93/262 (35.50%), Postives = 141/262 (53.82%), Query Frame = 2
Query:   53 SGPMDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHRE-VGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 832
            +G  +     LL++VID +   W  +            +     +  Q  + + L+FV +YL++HR N + ++A  A  S++++P    E    S    +         L E  +  +D A+    A      +A  LS+ LC++NR + E P ++ R LV+  +PDV E Y ++MN IFSAQK  V VD  +L +  S F+QQAAYLTGG+Y +  +  G++QYL A +LP  S RK LKL  Q SVDFRA CFCH++V+ 
Sbjct:   12 AGSSEPSVEGLLVLVIDTNPVHWFAQ-----------AAGTADRAGLQRLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPNPEQEDTSGSAEQAAKVNAGVMQRLQELSDAPLDNAKTNRTA------IAASLSRALCFINRAIHEDPELRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSSEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLIAIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVIS 256          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: H3GBC5_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GBC5_PHYRM)

HSP 1 Score: 157 bits (398), Expect = 1.550e-41
Identity = 85/215 (39.53%), Postives = 130/215 (60.47%), Query Frame = 2
Query:  194 QDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLE-HREVGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 832
            Q  + + L+FV +YL++HR N + ++A  A  S++++P    + E     G +    +    + + L+ + D     A+ +    A+A  +S+ LC++NR + E P ++ R LVV  +PDV E Y ++MN IFSAQK  V VD  +L A  S F+QQAAYLTGG+Y + +   G++QYL + +LP  S RK LKL  Q SVDFRA CFCH++V+ 
Sbjct:   47 QQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYP----DPEQEDTSGNAEQAAKVNAGVMQRLQQLSDAPLDPAKPNRT--AIAASISRALCFINRAINEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILAAEHSSFMQQAAYLTGGIYYKPNGPSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVIS 255          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: F0WU60_9STRA (General transcription factor IIH subunit putative n=2 Tax=Albugo TaxID=65356 RepID=F0WU60_9STRA)

HSP 1 Score: 155 bits (393), Expect = 6.440e-41
Identity = 91/259 (35.14%), Postives = 148/259 (57.14%), Query Frame = 2
Query:   62 MDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHREV-GIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 832
            M++   + L++++D + + W +            +  D+  S FQ TV++VL+FV +YL+++R N L ++A  A  S  ++P    E E  S  G  +     ++ + + L  + +  +       +  +++G +S+GLC +NR L+E   +  R  V+  +PDVPE Y S+MN+IFSAQK  V +D  +L    S F+QQA YLTGG+Y + R + G++QYL   +LP  + RK L+   Q+SVDFRA CFCHKK + 
Sbjct:    1 MEQTGAAFLVLILDTNPSHWWRNV--------DGMPTDQSDSLFQRTVKSVLIFVSSYLLLNRSNRLILLAAHAGSSVTLYPDALSESESES--GDQIGL--IRNIVLKNLLALSE--QTHDVTSKSTTSISGSISRGLCCMNRVLKENAQLCPRIFVIQRSPDVPEHYISIMNSIFSAQKKTVAIDACILSEEHSPFMQQATYLTGGIYYKPRVIDGLLQYLITLYLPDPNMRKMLRFPSQESVDFRAMCFCHKKAVS 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ72_9PHAE1.010e-13074.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYW3_ECTSI6.220e-9973.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZC01_9STRA1.600e-7144.62Putative general transcription factor IIH subunit ... [more]
A0A5D6XQC8_9STRA8.930e-4437.14Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WG36_GLOUD7.660e-4337.84Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662YF30_9STRA2.460e-4239.82Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A3M6VU71_9STRA2.670e-4239.81Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
M4BTB8_HYAAE4.140e-4235.50Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
H3GBC5_PHYRM1.550e-4139.53Uncharacterized protein n=17 Tax=Phytophthora TaxI... [more]
F0WU60_9STRA6.440e-4135.14General transcription factor IIH subunit putative ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10053contigH-elongata_contig10053:869..4553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.0
Seed ortholog evalue9.9e-81
Seed eggNOG ortholog2880.D7FYW3
Preferred nameTFB4
KEGG rclassRC00020,RC00041
KEGG koko:K01054,ko:K03143
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko03022,ko03420,ko04714,ko04723,ko04923,ko05203,map00561,map01100,map03022,map03420,map04714,map04723,map04923,map05203
KEGG ModuleM00098,M00290
GOsGO:0000109,GO:0000112,GO:0000428,GO:0000439,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006412,GO:0006464,GO:0006468,GO:0006518,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016310,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070816,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990391,GO:2000112,GO:2001141
EggNOG free text desc.phosphorylation of RNA polymerase II C-terminal domain
EggNOG OGsCOG5242@1,KOG2487@2759
EC3.1.1.23
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTFIIH subunit Tfb4/p34
Ec32 orthologEc-19_002710.1
Exons7
Model size1221
Cds size912
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.3476405-UTR-H-elongata_contig10053:868..9171622929547.3476405-UTR-H-elongata_contig10053:868..917Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10053 869..917 +
1691679063.9872737-UTR-H-elongata_contig10053:868..9171691679063.9872737-UTR-H-elongata_contig10053:868..917Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10053 869..917 +
1622929547.45596-UTR-H-elongata_contig10053:4293..45531622929547.45596-UTR-H-elongata_contig10053:4293..4553Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10053 4294..4553 +
1691679064.0894535-UTR-H-elongata_contig10053:4293..45531691679064.0894535-UTR-H-elongata_contig10053:4293..4553Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10053 4294..4553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.3597941-CDS-H-elongata_contig10053:917..10251622929547.3597941-CDS-H-elongata_contig10053:917..1025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 918..1025 +
1691679064.0125592-CDS-H-elongata_contig10053:917..10251691679064.0125592-CDS-H-elongata_contig10053:917..1025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 918..1025 +
1622929547.3734462-CDS-H-elongata_contig10053:1823..19571622929547.3734462-CDS-H-elongata_contig10053:1823..1957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 1824..1957 +
1691679064.0237033-CDS-H-elongata_contig10053:1823..19571691679064.0237033-CDS-H-elongata_contig10053:1823..1957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 1824..1957 +
1622929547.3854394-CDS-H-elongata_contig10053:2377..25111622929547.3854394-CDS-H-elongata_contig10053:2377..2511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 2378..2511 +
1691679064.0329003-CDS-H-elongata_contig10053:2377..25111691679064.0329003-CDS-H-elongata_contig10053:2377..2511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 2378..2511 +
1622929547.3969913-CDS-H-elongata_contig10053:2825..29201622929547.3969913-CDS-H-elongata_contig10053:2825..2920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 2826..2920 +
1691679064.047909-CDS-H-elongata_contig10053:2825..29201691679064.047909-CDS-H-elongata_contig10053:2825..2920Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 2826..2920 +
1622929547.4094431-CDS-H-elongata_contig10053:3086..32431622929547.4094431-CDS-H-elongata_contig10053:3086..3243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 3087..3243 +
1691679064.061817-CDS-H-elongata_contig10053:3086..32431691679064.061817-CDS-H-elongata_contig10053:3086..3243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 3087..3243 +
1622929547.4246256-CDS-H-elongata_contig10053:3599..37451622929547.4246256-CDS-H-elongata_contig10053:3599..3745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 3600..3745 +
1691679064.0727305-CDS-H-elongata_contig10053:3599..37451691679064.0727305-CDS-H-elongata_contig10053:3599..3745Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 3600..3745 +
1622929547.4360747-CDS-H-elongata_contig10053:4155..42931622929547.4360747-CDS-H-elongata_contig10053:4155..4293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 4156..4293 +
1691679064.0807118-CDS-H-elongata_contig10053:4155..42931691679064.0807118-CDS-H-elongata_contig10053:4155..4293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10053 4156..4293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10053.55.1prot_H-elongata_contig10053.55.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10053 918..4293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10053.55.1

>prot_H-elongata_contig10053.55.1 ID=prot_H-elongata_contig10053.55.1|Name=mRNA_H-elongata_contig10053.55.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=304bp
MSGPMDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQD
TVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGG
SVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKL
QEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAPSI
FLQQAAYLTGGLYLEHREVGIVQYLFATFLPSQSCRKYLKLRKQQSVDFR
AACFCHKKVLGVPVSILQILPRLFYLRYKSLAKKNRWEQEDMILGWHLAN
VYT*
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mRNA from alignment at H-elongata_contig10053:869..4553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10053.55.1 ID=mRNA_H-elongata_contig10053.55.1|Name=mRNA_H-elongata_contig10053.55.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3685bp|location=Sequence derived from alignment at H-elongata_contig10053:869..4553+ (Himanthalia elongata Himel1 dioecious)
GTCGTAGGAAGTTCAAACCTTCTGTTCAACCAGTGACAGGTGCTCGATCA TGTCAGGCCCCATGGATGAGGAGGAGCCAAGCCTTTTGATGATCGTGATC GATGCATCTTGTGCCTTCTGGACAAAGCGAGAGTTCATGCGGCGACAGGA AGACCAGGTACCTACTCTCGACCTCTGATAGGACCCATGATTTTAATATC CATCTGTGAGGAGACAACCAACGTGCAGGCAGCCGACGTACATAAAGACA ACAAGGCACGAACTTGCTTATAGAGCTATAGGAGAGTTATCGCTTTGAAA AATATAAAATATGCTGCGCCATTCAGAAGCCGGTCAGGGCTTCGCCCAGA CATACACCGATATCAAATTGCGGTGTGAAATTTATGTACACACAGTTTCT GGTTCTCAGGGGCGCTTTCCGGTAAAGCTATATACTCGTATGCTGTTTGT CTGATCGCGAGCGATACCACTGGGACACGCACCTACAGACCTTCAAGAAT ATGACCTACAGAGAGTATATTTTAATAGTACCAGTACTGCTGTATTGAAG TAACATCTATCGCAGAATGTTGGAAGGAAACACCAAATCGCCTATTACTA CGCAATCATCATAATGTCCGTTGCGCTATTCTGTAGAGTCATCTGGTTAT CTTGAGCCGCAAGCCGCGATGATTTATCCCACCCCTCAAGAGTCAAAACC CCATGAACGCGAGCAATGGAGCGTTGTCATATTCAACAATTGAGACAGCG AGAATGATTCACCAGCAGTAATCCGCGCGACACTTAGCGCCCAAAACAAC GGAGCTCGTGAAGGAGGGATGAGAACGCCATGGCAGACCCCGCATCCCCC CCACCCCCCCACGAAGTGCTCACGAATCGCTTGCCACAACGTCTGATGTC AAAACCGCCGCGGTGCTTTTGCCCCTCTCGACTTCGCCGTACACCCTCTC TTCAGCAAGATATATCGGATGATGAGAAGCTATCGACGTTTCAGGACACG GTTGAAGCCGTTCTCTTGTTCGTCGAGACCTACTTGATGATACACCGGAG GAACGAGCTTTGCGTCGTAGCTTGTACCGCAAAGGGGAGGTGAGGATATA TATGACGATCATACTATGTATGGTCATTCACATATACGGCAATACGACTC CCTCATTACGAGACACGTCGGGGTTTGAGCTGTATCCCTTCGACTAAAAT TTCTACAAATGCCGCCCTTTGTTTTGTTTTTTCTACGCGAAGATATGGCG TAATCTTTTTCGTAGCGTATGAATCGATGCGCCGCTCTTACGAGCCGGGC GAGAGTCGCGTGAGAAGTGGAAACCCATCGCGGAGGGGCCTTTGCGTCAA ACACCGCAACCTGGAGTTTAAGACTGTTTAGACTGAGAAATGACTTGATT CTGTAGGAAGCTGGAAGTGTACACCTCGTCACTGATGAACCCACAAAATA ATTATCCACCACACGTCGCGGGGAAGCCTCCGACGAAAACTTCTCTTTCT ACATTACAGTTCTATTATCTTCCCGACGCTCGCTATGGAACGAGAGCACC GATCGCTTGGCGGTGGATCAGTGAGCACCAAGGAGTTCCAGGATTGCCTA TGGGAGGGCCTGGAGTGCGTGGTCGATGGGGCGCGGGCTAGAGGTGAAGC TTTAGAAAAAGGCACATACATGTATTTGTACATCAAGTTCCAGAATTTGC CAAGCTTATCTGTAACCGGCATCGCACTCATGACCACGCTGCTCCTCACA TGCTTACCCCATGGTAGTTCTCTCGGAACGGCGCGTCACGCTCACAGTAG ATTCAAAGCTCTAGGTCGGTTGGAAGGATTTAATGATGAGGTTTTCGTTT GGAAGCCTCGCGCCGGGATATCTGCGGGTGCGCTCCCGTAGTTCCTCCTA CTTAAAAATATCCATCGCTTGATTTTGTATTGGAACGGACTTGAATGCCG GGGAGAGCAGAAGCGGACGACGCGGGATGCGCGCTAGCTGGAGGCCTGTC CAAGGGTCTTTGCTACGTCAACCGAAAGCTGCAAGAGGCTCCATCCATTC AAGTCAGTAACCCGTGAAATATCGTCTCCGAGGAAGGCTCGTTCGTACAC CCAACTTACCGCTGGCGCAAGGGCACCCTCCAAGCCTTGGAGTCGGTTGA CGAGAACAATATACCGCAATCAAAGCCCAACCCCTCGTGTGTCTTTTTCT CGATTTGCACCACCGCAGACACGCGCTCTGGTTGTTTCCGGGGCCCCCGA CGTGCCGGAGACGTACAACTCGGTGATGAACGCAATATTTTCCGCGCAGA AGGCAGGTGTCCTCGTCGACTGCGCCGTTTTGGGGGCGCCATCTATCTTC CTTCAGCAGGCGGCCTATCTAACCGGTACGATACATCAGACACCAAAAAG AAAACAAAATATATCAGAGGTTCGGGTAGCGCACCGTTGATTTTGTTGTC GCTCCTTCTCGACCGCAAGGCTAATAGTCGTGCCAGTAGGAGTGGATCGT GTTGTTTTGCGTCGGGCGTTCCCTTCCCATGCTTGTAACTGCTTTCGCGT CTGTTGAGTCTTCTAGAAGAAAACACGAGGCTTGATCCAAGCCCCGTGCC CTATCTCTGACTGTCAATGATCGCTGTGTGTGTGCATCACCGGCGGGAGA TGGCTGGAAACCCCCCTCTACCTTACGCGGCTGTGCTGACCTGCTTCTAC ATTGTGTTTTGCCTCCTTCTCGGTCCTCTAGGCGGTCTGTACCTGGAGCA CCGAGAAGTGGGGATTGTGCAGTACCTGTTCGCCACCTTCTTGCCCAGCC AGAGCTGCCGCAAGTACCTCAAGCTTCGAAAACAACAGAGCGTTGACTTC AGGGCCGCGTGCTTCTGCCACAAGAAGGTCGTCAACATTGCGTATGTGTG AGTCTTAGTCTTCCTGCGCGACCACTCACGGAAGCAGGTCTCCCGTCCGC GCGCCCGCCCTTCCGTAGCTAGACCTCCACACGATCGTTGAAAATAAGAG GGTTTAGGAGGTTCCGGGCAAGTAGACTATGGACAAGGCGACATCACCCC CCCCCCATCGCAACACGCCAACTCTCATGGAAAACGGCAGCACTGCTATT GTTAAACATACCGTCTGTTTCAGGGACTCGTGTTGTTTGTGACCGCTCCA TTTTTTGTTTTGTTTGCGCGATGATTAAACACCAATATCCCACACCCTAA CGCCTCGTCAAGAATTGCACGTTTTGCTGCCGCACCGCGTCGACGCCTTC CATCCCTCTTTCCTCCTGTGCCTACCGCGTGCCGCAGGTGCTCGGTGTGC CTGTCAGTATTTTGCAGATTCTCCCCCGTTTGTTCTACTTGCGGTACAAG AGCTTGGCCAAAAAAAATCGCTGGGAACAAGAAGACATGATCCTCGGATG GCACCTCGCCAATGTCTACACCTAAGCCATCATTTTAGTGTACTTAAGTA TATATTTTGTCGTAATGGTTTGCACTTTTAAGTTAATCGGTTAGTCGCGC CTCTCGACTGGTGCAACCACATCGCTACATCGCGGAGAGCTGCAGCGCAC CTCCATTTCGCCCTGAACACAAACCCGCCCCAGCACTGCTCGTACCCTCG AAAGCGTAGTGCGGCCACGTAACTTGCAGAACTGGCTGCCCTTGCTGTCT ACACTCATGAAGCTCTCTCCCTCTCGACGTCCACC
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Coding sequence (CDS) from alignment at H-elongata_contig10053:869..4553+

>mRNA_H-elongata_contig10053.55.1 ID=mRNA_H-elongata_contig10053.55.1|Name=mRNA_H-elongata_contig10053.55.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1824bp|location=Sequence derived from alignment at H-elongata_contig10053:869..4553+ (Himanthalia elongata Himel1 dioecious)
ATGTCAGGCCCCATGGATGAGGAGGAGCCAAGCCTTTTGATGATCGTGAT
CGATGCATCTTGTGCCTTCTGGACAAAGCGAGAGTTCATGCGGCGACAGG
AAGACCAGATGTCAGGCCCCATGGATGAGGAGGAGCCAAGCCTTTTGATG
ATCGTGATCGATGCATCTTGTGCCTTCTGGACAAAGCGAGAGTTCATGCG
GCGACAGGAAGACCAGCAAGATATATCGGATGATGAGAAGCTATCGACGT
TTCAGGACACGGTTGAAGCCGTTCTCTTGTTCGTCGAGACCTACTTGATG
ATACACCGGAGGAACGAGCTTTGCGTCGTAGCTTGTACCGCAAAGGGGAG
CAAGATATATCGGATGATGAGAAGCTATCGACGTTTCAGGACACGGTTGA
AGCCGTTCTCTTGTTCGTCGAGACCTACTTGATGATACACCGGAGGAACG
AGCTTTGCGTCGTAGCTTGTACCGCAAAGGGGAGTTCTATTATCTTCCCG
ACGCTCGCTATGGAACGAGAGCACCGATCGCTTGGCGGTGGATCAGTGAG
CACCAAGGAGTTCCAGGATTGCCTATGGGAGGGCCTGGAGTGCGTGGTCG
ATGGGGCGCGGGCTAGAGTTCTATTATCTTCCCGACGCTCGCTATGGAAC
GAGAGCACCGATCGCTTGGCGGTGGATCAGTGAGCACCAAGGAGTTCCAG
GATTGCCTATGGGAGGGCCTGGAGTGCGTGGTCGATGGGGCGCGGGCTAG
AGCAGAAGCGGACGACGCGGGATGCGCGCTAGCTGGAGGCCTGTCCAAGG
GTCTTTGCTACGTCAACCGAAAGCTGCAAGAGGCTCCATCCATTCAACAG
AAGCGGACGACGCGGGATGCGCGCTAGCTGGAGGCCTGTCCAAGGGTCTT
TGCTACGTCAACCGAAAGCTGCAAGAGGCTCCATCCATTCAAACACGCGC
TCTGGTTGTTTCCGGGGCCCCCGACGTGCCGGAGACGTACAACTCGGTGA
TGAACGCAATATTTTCCGCGCAGAAGGCAGGTGTCCTCGTCGACTGCGCC
GTTTTGGGGGCGCCATCTATCTTCCTTCAGCAGGCGGCCTATCTAACCGA
CACGCGCTCTGGTTGTTTCCGGGGCCCCCGACGTGCCGGAGACGTACAAC
TCGGTGATGAACGCAATATTTTCCGCGCAGAAGGCAGGTGTCCTCGTCGA
CTGCGCCGTTTTGGGGGCGCCATCTATCTTCCTTCAGCAGGCGGCCTATC
TAACCGGCGGTCTGTACCTGGAGCACCGAGAAGTGGGGATTGTGCAGTAC
CTGTTCGCCACCTTCTTGCCCAGCCAGAGCTGCCGCAAGTACCTCAAGCT
TCGAAAACAACAGAGCGTTGACTTCAGGGCCGCGTGCTTCTGCCACAAGA
AGGCGGTCTGTACCTGGAGCACCGAGAAGTGGGGATTGTGCAGTACCTGT
TCGCCACCTTCTTGCCCAGCCAGAGCTGCCGCAAGTACCTCAAGCTTCGA
AAACAACAGAGCGTTGACTTCAGGGCCGCGTGCTTCTGCCACAAGAAGGT
GCTCGGTGTGCCTGTCAGTATTTTGCAGATTCTCCCCCGTTTGTTCTACT
TGCGGTACAAGAGCTTGGCCAAAAAAAATCGCTGGGAACAAGAAGACATG
ATCCTCGGATGGCACCTCGCCAATGTCTACACCTAAGTGCTCGGTGTGCC
TGTCAGTATTTTGCAGATTCTCCCCCGTTTGTTCTACTTGCGGTACAAGA
GCTTGGCCAAAAAAAATCGCTGGGAACAAGAAGACATGATCCTCGGATGG
CACCTCGCCAATGTCTACACCTAA
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