mRNA_H-elongata_contig100513.54.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100513.54.1
Unique NamemRNA_H-elongata_contig100513.54.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100513.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100513contigH-elongata_contig100513:1309..2125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size197
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.2910998-CDS-H-elongata_contig100513:1308..13921622929547.2910998-CDS-H-elongata_contig100513:1308..1392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100513 1309..1392 -
1691679063.960638-CDS-H-elongata_contig100513:1308..13921691679063.960638-CDS-H-elongata_contig100513:1308..1392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100513 1309..1392 -
1622929547.3079069-CDS-H-elongata_contig100513:2014..21251622929547.3079069-CDS-H-elongata_contig100513:2014..2125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100513 2015..2125 -
1691679063.976474-CDS-H-elongata_contig100513:2014..21251691679063.976474-CDS-H-elongata_contig100513:2014..2125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100513 2015..2125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100513.54.1prot_H-elongata_contig100513.54.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100513 1309..2125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100513.54.1

>prot_H-elongata_contig100513.54.1 ID=prot_H-elongata_contig100513.54.1|Name=mRNA_H-elongata_contig100513.54.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
ISEYARYFKQAAINSKIPVFEKAATLLKGAVGQAAMKIAPNAVKAKENLN
KINTRATFIKEVRN*
back to top

mRNA from alignment at H-elongata_contig100513:1309..2125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100513.54.1 ID=mRNA_H-elongata_contig100513.54.1|Name=mRNA_H-elongata_contig100513.54.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=817bp|location=Sequence derived from alignment at H-elongata_contig100513:1309..2125- (Himanthalia elongata Himel1 dioecious)
ATATCCGAGTACGCGAGGTATTTCAAGCAAGCGGCCATCAACTCGAAGAT
CCCGGTTTTCGAAAAGGCAGCGACCCTCCTTAAAGGCGCTGTGGGCCAGG
CCGCCATGAAGGTGACCTTCCAGTGATTACCTATATAATATTAAAATCCC
CTTTTTTGGTCATTATTAGTTTTTAACAGTTACCTCGGCGAAAGCTAACT
TAATTCACTGATTGGTTGATTTATCAGATAATAAGTAAGGTGATATCAAA
ATCCAGTCCGTAGTCACAAGATAGAATTTTAAAGTATGGAAACAAAGAAA
AACAAACAAACTTTACGATCATGAAGGATTAGTAACTGGAAATCCTTCAA
AACGACACTCCCGCTACTACGCGAAAGGCGCTTTTCAGGGCGTACATGTC
ATGATGATATTTGCTTCCCCAAACTAATACTAGAACGGAGTTAGCAAAGC
TGTCGCTGAAACATTGTTCACTATATTTCATTTCTTCCACCAATCGATGT
CGTAAGAGTCATATGACGGGATCCCCGACATTAACCGTCGACTCGACCCG
ATGAATTTACCACTGGGGAACACGAATAATCATATATATATTTTGATTAT
AGTAATGTCCACATTCGAATATTCGGAGGGTTTTAATGAGTTCATACCTG
GTATATTTTAATAAAAAGCGCTCCGATACGCCCCTCCTGCTGCTGCATGC
ACACTTCGCGCTTCCCCCTTCTTCCGGGCTTAGATTGCGCCGAACGCCGT
AAAGGCGAAGGAAAACCTAAATAAAATCAATACGAGAGCAACATTTATCA
AGGAGGTCAGGAACTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig100513:1309..2125-

>mRNA_H-elongata_contig100513.54.1 ID=mRNA_H-elongata_contig100513.54.1|Name=mRNA_H-elongata_contig100513.54.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig100513:1309..2125- (Himanthalia elongata Himel1 dioecious)
ATATCCGAGTACGCGAGGTATTTCAAGCAAGCGGCCATCAACTCGAAGAT
CCCGGTTTTCGAAAAGGCAGCGACCCTCCTTAAAGGCGCTGTGGGCCAGG
CCGCCATGAAGATATCCGAGTACGCGAGGTATTTCAAGCAAGCGGCCATC
AACTCGAAGATCCCGGTTTTCGAAAAGGCAGCGACCCTCCTTAAAGGCGC
TGTGGGCCAGGCCGCCATGAAGATTGCGCCGAACGCCGTAAAGGCGAAGG
AAAACCTAAATAAAATCAATACGAGAGCAACATTTATCAAGGAGGTCAGG
AACTAGATTGCGCCGAACGCCGTAAAGGCGAAGGAAAACCTAAATAAAAT
CAATACGAGAGCAACATTTATCAAGGAGGTCAGGAACTAG
back to top