mRNA_H-elongata_contig100512.53.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100512.53.1
Unique NamemRNA_H-elongata_contig100512.53.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5L605_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L605_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 8.150e-20
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 2
Query:   56 TRSLLGRTWSFKLAERVEGFIKSKGWELIWTPPYTSSFQSIELFWQHGKAYFSFNFETGRKMYEVGEKIRLGW 274
            TR+   + +  KL E+ E +I+ KGW LIWTPPYT +FQ +ELFWQHG+ Y S +FE GRKM++V + +R GW
Sbjct:  131 TRTYFKKNFPQKLEEKAETYIREKGWGLIWTPPYTPTFQPMELFWQHGRHYVSIHFEKGRKMFDVWKHVRFGW 203          
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 4.130e-18
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 2
Query:   89 KLAERVEGFIKSKGWELIWTPPYTSSFQSIELFWQHGKAYFSFNFETGRKMYEVGEKIRLGW 274
            KL E+VE F+  +GW+LIWTPPY  SFQ IELFWQHGK Y SFNF+T R M EV  ++R GW
Sbjct:  496 KLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGW 557          
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5KF82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF82_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.930e-18
Identity = 45/86 (52.33%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  264 VWV----GWYGDEGWGGH------AICSKLFAHAMGEMNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGS 491
            VWV    GWYGD  W G       A  S L AHA+GEMN+WVK+ D  LSG +G L +P GYD DD+   DD+EDGV +EI  E S
Sbjct:    4 VWVQIRKGWYGDPAWAGQKGGWKAANYSNLEAHAIGEMNKWVKDGDTVLSGTIGALNVPAGYDTDDVSPVDDVEDGVGEEIEQESS 89          
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5JH53_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH53_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.950e-18
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 3
Query:  258 RFVWV----GWYGDEGWGGH------AICSKLFAHAMGEMNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGSE 494
            R VWV    GWYGD+ W G       A CSKL  HA+GEMN+WVK+RD  LSG +G+L  P GYD DD+    D+E+GV ++I  E +E
Sbjct:   43 REVWVQIRKGWYGDKEWPGQEGGWKAANCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAE 131          
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.380e-17
Identity = 46/89 (51.69%), Postives = 58/89 (65.17%), Query Frame = 3
Query:  258 RFVWV----GWYGDEGWGGH------AICSKLFAHAMGEMNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGSE 494
            R VWV    GWYGD+ W G       A CSKL  HA+GEMN+WV++RD  LSGK+G L  P GYDKDD+    D+E+GV ++I  E +E
Sbjct:  576 REVWVQIRQGWYGDKEWSGQEGGWKAANCSKLVEHAIGEMNKWVRDRDAGLSGKIGNLQKPDGYDKDDVSPVGDVEEGVGEQIQQESAE 664          
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5JZ34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ34_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.890e-17
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 3
Query:  258 RFVWV----GWYGDEGWGGH------AICSKLFAHAMGEMNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGSE 494
            R VWV    GWYGD+ W G       A CSKL  HA+ EMN+WVK+RD  LSG +G+L+ P GYD DD+   DD+E+G  +EI  E +E
Sbjct:  171 REVWVPIRKGWYGDKEWPGQEGGWKAANCSKLVDHALREMNKWVKDRDGVLSGTIGSLIKPDGYDTDDVLPVDDVEEGGGEEIQQESAE 259          
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5JS64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS64_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 7.570e-17
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 3
Query:  258 RFVWV----GWYGDEGWGGH------AICSKLFAHAMGEMNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGSE 494
            R VWV    GWY DE W G       A CSKL  HA+GEMN+WVK+RD  LSG +G+L+ P GYD DD+    D+E+GV + I  E +E
Sbjct:  156 REVWVQIRKGWYRDEAWPGQEGGWKAANCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLIKPDGYDTDDVSPVGDVEEGVGEPIQRESAE 244          
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.990e-16
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 3
Query:  258 RFVWV----GWYGDEGWGGH------AICSKLFAHAMGEMNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGSE 494
            R VWV    GWYGD+ W G       A CSKL  HA+GEMN+WVK+RD  LSG +G+L  P GYD DD+    D+E+GV ++I  E +E
Sbjct:  228 REVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAE 316          
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5K6H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H9_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.680e-16
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 2
Query:   89 KLAERVEGFIKSKGWELIWTPPYTSSFQSIELFWQHGKAYFSFNFETGRKMYEVGEKIRLGW 274
            KL ++ E +++ KGW LIWTPPY ++FQSIELFWQH K Y S +FE G  M +V  +IRLGW
Sbjct:   94 KLEDKAETYMREKGWGLIWTPPYMTNFQSIELFWQHVKHYVSIHFEKGGNMLDVWRQIRLGW 155          
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.900e-16
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 3
Query:  258 RFVWV----GWYGDEGWGGH------AICSKLFAHAMGEMNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGSE 494
            R VWV    GWYGD+ W G       A CSKL  HA+GEMN+WVK+RD  LSG +G+L  P GYD DD+    D+E+GV ++I  E +E
Sbjct:  270 REVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAE 358          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5L605_9PHAE8.150e-2053.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ25_ECTSI4.130e-1864.52Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KF82_9PHAE4.930e-1852.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH53_9PHAE6.950e-1850.56Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
D8LNM6_ECTSI1.380e-1751.69DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JZ34_9PHAE6.890e-1750.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS64_9PHAE7.570e-1750.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ92_9PHAE1.990e-1650.56DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6H9_9PHAE2.680e-1658.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHE7_9PHAE2.900e-1650.56DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100512contigH-elongata_contig100512:581..1127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size547
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100512.53.1prot_H-elongata_contig100512.53.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100512 775..1122 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.210957-UTR-H-elongata_contig100512:580..7741622929547.210957-UTR-H-elongata_contig100512:580..774Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100512 581..774 +
1691679063.9146593-UTR-H-elongata_contig100512:580..7741691679063.9146593-UTR-H-elongata_contig100512:580..774Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100512 581..774 +
1622929547.2401924-UTR-H-elongata_contig100512:1122..11271622929547.2401924-UTR-H-elongata_contig100512:1122..1127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100512 1123..1127 +
1691679063.9435737-UTR-H-elongata_contig100512:1122..11271691679063.9435737-UTR-H-elongata_contig100512:1122..1127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100512 1123..1127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.2241058-CDS-H-elongata_contig100512:774..11221622929547.2241058-CDS-H-elongata_contig100512:774..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100512 775..1122 +
1691679063.9306061-CDS-H-elongata_contig100512:774..11221691679063.9306061-CDS-H-elongata_contig100512:774..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100512 775..1122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100512.53.1

>prot_H-elongata_contig100512.53.1 ID=prot_H-elongata_contig100512.53.1|Name=mRNA_H-elongata_contig100512.53.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MARRISASILRRDGRCMRWGRRFVWVGWYGDEGWGGHAICSKLFAHAMGE
MNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGSE
DLLGDVEASGDAEVV*
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mRNA from alignment at H-elongata_contig100512:581..1127+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100512.53.1 ID=mRNA_H-elongata_contig100512.53.1|Name=mRNA_H-elongata_contig100512.53.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=547bp|location=Sequence derived from alignment at H-elongata_contig100512:581..1127+ (Himanthalia elongata Himel1 dioecious)
CCTGGGTCTACGTTTCCTGGGGCGAGATCGGCAGGCGGAGTAAGCAAAGA GGAGGACGCGATCGCTACTCGGGCGTACTTGGAGCTTCAAACTCGCTGAA CGGGTAGAGGGGTTTATAAAGAGTAAGGGGTGGGAGTTGATTTGGACACC CCCGTACACATCGTCTTTCCAGTCGATCGAGCTGTTTTGGCAGCATGGCA AGGCGTATTTCAGCTTCAATTTTGAGACGGGACGGAAGATGTATGAGGTG GGGGAGAAGATTCGTCTGGGTTGGTTGGTACGGGGACGAAGGGTGGGGAG GACATGCCATTTGTTCGAAGTTGTTTGCTCATGCCATGGGCGAGATGAAC GAGTGGGTGAAGGAGCGCGACAAGGAGCTGAGCGGTAAGATGGGTACTCT TGTGATCCCACCTGGGTATGACAAGGACGATATCTGTCGAGCTGATGATC TTGAGGACGGAGTGATAGACGAGATTTTCCTGGAAGGCTCGGAGGATTTG TTGGGGGATGTTGAAGCGTCTGGTGATGCCGAGGTTGTATAATATCG
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Coding sequence (CDS) from alignment at H-elongata_contig100512:581..1127+

>mRNA_H-elongata_contig100512.53.1 ID=mRNA_H-elongata_contig100512.53.1|Name=mRNA_H-elongata_contig100512.53.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig100512:581..1127+ (Himanthalia elongata Himel1 dioecious)
ATGGCAAGGCGTATTTCAGCTTCAATTTTGAGACGGGACGGAAGATGTAT
GAGGTGGGGGAGAAGATTCGTCTGGGTTGGTTGGTACGGGGACGAAGGGT
GGGGAGGACATGCCATTTGTTCGAAGTTGTTTGCTCATGCCATGGGCGAG
ATGAACGAGTGGGTGAAGGAGCGCGACAAGGAGCTGAGCGGTAAGATGGG
TACTCTTGTGATCCCACCTGGGTATGACAAGGACGATATCTGTCGAGCTG
ATGATCTTGAGGACGGAGTGATAGACGAGATTTTCCTGGAAGGCTCGGAG
GATTTGTTGGGGGATGTTGAAGCGTCTGGTGATGCCGAGGTTGTATAAAT
GGCAAGGCGTATTTCAGCTTCAATTTTGAGACGGGACGGAAGATGTATGA
GGTGGGGGAGAAGATTCGTCTGGGTTGGTTGGTACGGGGACGAAGGGTGG
GGAGGACATGCCATTTGTTCGAAGTTGTTTGCTCATGCCATGGGCGAGAT
GAACGAGTGGGTGAAGGAGCGCGACAAGGAGCTGAGCGGTAAGATGGGTA
CTCTTGTGATCCCACCTGGGTATGACAAGGACGATATCTGTCGAGCTGAT
GATCTTGAGGACGGAGTGATAGACGAGATTTTCCTGGAAGGCTCGGAGGA
TTTGTTGGGGGATGTTGAAGCGTCTGGTGATGCCGAGGTTGTATAA
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