mRNA_H-elongata_contig100512.53.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5L605_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L605_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 8.150e-20 Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 2 Query: 56 TRSLLGRTWSFKLAERVEGFIKSKGWELIWTPPYTSSFQSIELFWQHGKAYFSFNFETGRKMYEVGEKIRLGW 274 TR+ + + KL E+ E +I+ KGW LIWTPPYT +FQ +ELFWQHG+ Y S +FE GRKM++V + +R GW Sbjct: 131 TRTYFKKNFPQKLEEKAETYIREKGWGLIWTPPYTPTFQPMELFWQHGRHYVSIHFEKGRKMFDVWKHVRFGW 203
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 4.130e-18 Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 2 Query: 89 KLAERVEGFIKSKGWELIWTPPYTSSFQSIELFWQHGKAYFSFNFETGRKMYEVGEKIRLGW 274 KL E+VE F+ +GW+LIWTPPY SFQ IELFWQHGK Y SFNF+T R M EV ++R GW Sbjct: 496 KLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGW 557
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5KF82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF82_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 4.930e-18 Identity = 45/86 (52.33%), Postives = 53/86 (61.63%), Query Frame = 3 Query: 264 VWV----GWYGDEGWGGH------AICSKLFAHAMGEMNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGS 491 VWV GWYGD W G A S L AHA+GEMN+WVK+ D LSG +G L +P GYD DD+ DD+EDGV +EI E S Sbjct: 4 VWVQIRKGWYGDPAWAGQKGGWKAANYSNLEAHAIGEMNKWVKDGDTVLSGTIGALNVPAGYDTDDVSPVDDVEDGVGEEIEQESS 89
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5JH53_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH53_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 6.950e-18 Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 3 Query: 258 RFVWV----GWYGDEGWGGH------AICSKLFAHAMGEMNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGSE 494 R VWV GWYGD+ W G A CSKL HA+GEMN+WVK+RD LSG +G+L P GYD DD+ D+E+GV ++I E +E Sbjct: 43 REVWVQIRKGWYGDKEWPGQEGGWKAANCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAE 131
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 1.380e-17 Identity = 46/89 (51.69%), Postives = 58/89 (65.17%), Query Frame = 3 Query: 258 RFVWV----GWYGDEGWGGH------AICSKLFAHAMGEMNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGSE 494 R VWV GWYGD+ W G A CSKL HA+GEMN+WV++RD LSGK+G L P GYDKDD+ D+E+GV ++I E +E Sbjct: 576 REVWVQIRQGWYGDKEWSGQEGGWKAANCSKLVEHAIGEMNKWVRDRDAGLSGKIGNLQKPDGYDKDDVSPVGDVEEGVGEQIQQESAE 664
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5JZ34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ34_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 6.890e-17 Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 3 Query: 258 RFVWV----GWYGDEGWGGH------AICSKLFAHAMGEMNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGSE 494 R VWV GWYGD+ W G A CSKL HA+ EMN+WVK+RD LSG +G+L+ P GYD DD+ DD+E+G +EI E +E Sbjct: 171 REVWVPIRKGWYGDKEWPGQEGGWKAANCSKLVDHALREMNKWVKDRDGVLSGTIGSLIKPDGYDTDDVLPVDDVEEGGGEEIQQESAE 259
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5JS64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS64_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 7.570e-17 Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 3 Query: 258 RFVWV----GWYGDEGWGGH------AICSKLFAHAMGEMNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGSE 494 R VWV GWY DE W G A CSKL HA+GEMN+WVK+RD LSG +G+L+ P GYD DD+ D+E+GV + I E +E Sbjct: 156 REVWVQIRKGWYRDEAWPGQEGGWKAANCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLIKPDGYDTDDVSPVGDVEEGVGEPIQRESAE 244
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.990e-16 Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 3 Query: 258 RFVWV----GWYGDEGWGGH------AICSKLFAHAMGEMNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGSE 494 R VWV GWYGD+ W G A CSKL HA+GEMN+WVK+RD LSG +G+L P GYD DD+ D+E+GV ++I E +E Sbjct: 228 REVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAE 316
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5K6H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H9_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 2.680e-16 Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 2 Query: 89 KLAERVEGFIKSKGWELIWTPPYTSSFQSIELFWQHGKAYFSFNFETGRKMYEVGEKIRLGW 274 KL ++ E +++ KGW LIWTPPY ++FQSIELFWQH K Y S +FE G M +V +IRLGW Sbjct: 94 KLEDKAETYMREKGWGLIWTPPYMTNFQSIELFWQHVKHYVSIHFEKGGNMLDVWRQIRLGW 155
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 2.900e-16 Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 3 Query: 258 RFVWV----GWYGDEGWGGH------AICSKLFAHAMGEMNEWVKERDKELSGKMGTLVIPPGYDKDDICRADDLEDGVIDEIFLEGSE 494 R VWV GWYGD+ W G A CSKL HA+GEMN+WVK+RD LSG +G+L P GYD DD+ D+E+GV ++I E +E Sbjct: 270 REVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVEEGVGEQIQQESAE 358 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100512.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100512.53.1 >prot_H-elongata_contig100512.53.1 ID=prot_H-elongata_contig100512.53.1|Name=mRNA_H-elongata_contig100512.53.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp MARRISASILRRDGRCMRWGRRFVWVGWYGDEGWGGHAICSKLFAHAMGEback to top mRNA from alignment at H-elongata_contig100512:581..1127+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100512.53.1 ID=mRNA_H-elongata_contig100512.53.1|Name=mRNA_H-elongata_contig100512.53.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=547bp|location=Sequence derived from alignment at H-elongata_contig100512:581..1127+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100512:581..1127+ >mRNA_H-elongata_contig100512.53.1 ID=mRNA_H-elongata_contig100512.53.1|Name=mRNA_H-elongata_contig100512.53.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig100512:581..1127+ (Himanthalia elongata Himel1 dioecious)back to top |