mRNA_H-elongata_contig100506.51.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100506.51.1
Unique NamemRNA_H-elongata_contig100506.51.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: D8LIB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB0_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 5.650e-89
Identity = 134/200 (67.00%), Postives = 161/200 (80.50%), Query Frame = 1
Query:    1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDPKGSFLPNGRAAWFPMRYFPLLLVTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKLNSKPVNRY 600
            +IV R       E+HG+FG++AALAVAA Q D   + LP GRA WFP RY PLLLVTASA  RA S+P+V++DFPFVVVGA+++WVYLRFFAH+V+G PSGD++++F+LV FFP     VVKP+ DFTYGVFLLLG FKGR AR+P+S VDGQGG+DP  VA LP P +KDPIAERRRARAMKLLDEKFA LN+KP NR+
Sbjct:  117 YIVTRQEYLLDLELHGSFGVLAALAVAAAQQDASATLLPAGRAPWFPTRYLPLLLVTASAMCRALSVPVVAKDFPFVVVGAYASWVYLRFFAHLVLGAPSGDVTEDFQLVNFFPLPCRRVVKPMCDFTYGVFLLLGCFKGRAARLPVSVVDGQGGVDPLVVATLPTPARKDPIAERRRARAMKLLDEKFATLNAKPANRW 316          
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: A0A836CJN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJN9_9STRA)

HSP 1 Score: 124 bits (311), Expect = 4.380e-30
Identity = 79/205 (38.54%), Postives = 103/205 (50.24%), Query Frame = 1
Query:   37 EIHGTFGLMAALAVAATQHDPKGSFLPNGRAAWFPMRYFPLLLVTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFF--------AHIVVGGPS-----GDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGR-----EARV-PLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKLNSKPVN 594
            E+HG +GL+ ALAVA     P            F +R+ P+  +T S       +  +S DFPFV VG+++ WVYLRFF        A +  G        GD+SD F L +F PP     ++PL DF YGV LLLG F+ R      AR+   S                     +DP+AERRRARAMKLLDEKFA+L++   N
Sbjct:  125 EVHGAWGLVCALAVAFAHALPLEPLFAPPALRGFKVRHLPVTAITLSGILYGAGLRAMSTDFPFVCVGSYAGWVYLRFFHTFPPVAAATLPPGAAPTATIPGDVSDAFALAMFLPPFTRRWLRPLADFVYGVALLLGLFRARAEYAAHARLLRASXXXXXXXXXXXXXXXXXXXRARDPVAERRRARAMKLLDEKFAQLSAAEEN 329          
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: A0A2D4CBN0_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBN0_PYTIN)

HSP 1 Score: 103 bits (257), Expect = 3.560e-23
Identity = 75/206 (36.41%), Postives = 105/206 (50.97%), Query Frame = 1
Query:    1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDPKGSFLPNGRAAWFP---MRYFPLL---------LVTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKLNS 582
            +I++R  +F    + G  G   AL VA  +  P  +      +A FP   +R++PLL         LV   A+++   + L+    P+ V+GA+  W YLRFF +       GDIS+EF LVV FP     VV P+ +F++ V  L G+FK R A+              S + I+      DPIAERR+ARAMK LDEK AKL S
Sbjct:  109 YIIFRAPIFLKTSLSGFAGGFTALLVAYMKPTPHAT------SAMFPTIKLRFYPLLAVLFFSLCTLVAMGASSKPLRVSLIGAG-PYSVLGAYLGWYYLRFF-NKNADRSVGDISEEFGLVVLFPDCCASVVGPVANFSFSVAKLCGYFKNRSAKAA------------SALPIVTD-ASNDPIAERRKARAMKALDEKLAKLAS 293          
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: A0A7S2CKW4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CKW4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 8.280e-23
Identity = 64/190 (33.68%), Postives = 99/190 (52.11%), Query Frame = 1
Query:    1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDPKGSFLPNGRAAWFPMRYFPLLLVTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFA 570
            F+V R+      + +G  GL+ ALAV      P+ + LP   +      + P+LL   S      +I   ++D PFVV+G +++W YLRF  H    G  G++S++F  +  FPP     + P  +FTYGV  LLG+FK R   +       +  + P+++     P+  DP+AERRRA+A + LD K A
Sbjct:  143 FVVTRMETVLFMQTYGFGGLIGALAVGLKLIAPRETPLPTVPS--LKCHHLPMLLGIVSLFCWTLNITAFAKDTPFVVIGIYASWWYLRF-VHKGRDGLVGNVSEDFAFITLFPPACRRYLSPFAEFTYGVACLLGYFKERRPALAGMPSTEETPLVPASLL----PQVHDPVAERRRAKAREQLDAKLA 325          
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: A0A024GA42_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GA42_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.680e-22
Identity = 72/187 (38.50%), Postives = 98/187 (52.41%), Query Frame = 1
Query:   46 GTFGLMAALAVAATQHDPKGSFLPNGRAAWFPMRYFPLLLV------TASATTRAFSIPL----VSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKL 576
            G+ G ++ L VA  +       +    A++  MR++P  LV      T+       S+PL    VS   P+   G +  W YLRF  H+    P GDIS+EF+L V FP  +   V  +G F++GV  L G+FK R  ++  SA+       P TV     PEK DP+AERR+ARAMK LDEK AKL
Sbjct:  127 GSMGTISGLLVALMKPQFNEQIV---NASFLKMRFYPFTLVLCAWFLTSLGIAFVHSMPLHSVLVSMG-PYASSGVYLGWFYLRFL-HLTPDEPLGDISEEFKLSVLFPQQMAGYVNAIGSFSFGVARLCGYFKKRPKKLGQSAL-------PFTVE----PEKIDPVAERRKARAMKALDEKLAKL 297          
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: A0A3F2RU99_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RU99_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.010e-20
Identity = 78/205 (38.05%), Postives = 98/205 (47.80%), Query Frame = 1
Query:    1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDPKGSFLPNGRAAWFP---MRYFPL----------LLVTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKL 576
            +IV+R  ++      G  G + AL VA  +  P  +      A  FP   +RY+PL          +   A +   A SI LVS   PF V+G F  W YLRF  +       GD+SDEF L+V  P     V+ PL +F + V  L GFFK R A+ P           P    I     K DPIAERR+ARAMK LDEK AKL
Sbjct:  109 YIVFRDPIYLEANFSGFTGGITALLVAYMKPTPYAA------APLFPGVQLRYYPLVASGVFSFCSIFGLAFSAGPAVSIMLVSAG-PFSVLGGFFGWYYLRFL-NKNRDQTVGDVSDEFALIVLLPDFSKPVIGPLANFCFSVVKLCGFFKKRAAQKPKML--------PILTEI-----KNDPIAERRKARAMKALDEKLAKL 292          
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: A0A485KCW3_9STRA (Aste57867_5077 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCW3_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.530e-20
Identity = 69/199 (34.67%), Postives = 95/199 (47.74%), Query Frame = 1
Query:    1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDPKGSFLPNGRAAWFPMRYFPLLLVTASAT-------TRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKL 576
            +I++R   F    + G  G + A+ VA  + +P  + +    +     RY+PL++     T       TRA  I +V    P+ + G +  W YLRF A     G  GD SD F L V FPP L   ++P+ D  + V  L G F  R+A    S           TVA+       DP+AERR+ARAMK LDEK AKL
Sbjct:  113 YIIFRNPFFLRTGVSGFTGGLVAMLVALAKENPMQTLVVPKLSC----RYYPLIVTLVCLTLSFLAVFTRA-EILIVGAG-PYALSGFYFGWFYLRFLAKNA-DGSVGDTSDAFSLAVLFPPFLRTTIQPICDLVFNVARLCGLFSNRDAAAAASL---------PTVAVA-----SDPVAERRKARAMKALDEKLAKL 290          
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: A0A024US08_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024US08_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.590e-19
Identity = 69/199 (34.67%), Postives = 94/199 (47.24%), Query Frame = 1
Query:    1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDP-KGSFLPNGRAAWFPMRYFPLLL------VTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKL 576
            +IV+R   F    + G  G + A+ VA  + +P +   +P       P RY+PL+L      ++  A      I +V    P+ V G +  W YLRF A     G  GD S+ F L V FP  L   + P+ DF + V  L G FK R+A+              +  A LP     DP+ ERR+ARAMK LDEK AKL
Sbjct:  113 YIVFRNAFFLRTGVSGFTGGLVAMLVALVKENPVQALVIPK-----VPCRYYPLMLTVLCLAMSIGAVLTKAEILIVGAG-PYAVSGLYFGWFYLRFIAKNA-DGSKGDTSEAFSLTVLFPSFLKPSLAPIFDFFFNVAKLCGLFKYRDAQ--------------AAAASLPKTFPSDPVTERRKARAMKALDEKLAKL 290          
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: W4H9H0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9H0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.500e-19
Identity = 72/203 (35.47%), Postives = 95/203 (46.80%), Query Frame = 1
Query:    1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDPKGSF-LPNGRAAWFPMRYFPLLL------VTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKLNSKP 588
            +IV+R   F    + G  G + A+ VA  + +P     +P       P RY+PLLL      ++  A      I +V    P+ V G +  WVYLRF A     G  GD SD F L V FP  L   + PL DF + V  L GFF+ R+        +   G   +  A+       DP+ ERR+ARAMK LDEK AKL   P
Sbjct:  113 YIVFRSPFFLRTGVSGFTGGLVAMLVALVKENPVQPLGIPK-----LPCRYYPLLLTVLCVAMSVGAVLTKNEILIVGAG-PYAVSGLYFGWVYLRFVAKNP-DGSVGDESDAFSLTVLFPAFLKPSLAPLFDFCFNVSKLCGFFQHRQGH------NATSGSSLAKAALA-----SDPVTERRKARAMKALDEKLAKLAVMP 297          
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: M4BRC3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRC3_HYAAE)

HSP 1 Score: 92.4 bits (228), Expect = 5.850e-19
Identity = 74/203 (36.45%), Postives = 99/203 (48.77%), Query Frame = 1
Query:    1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDP--KGSFLPNGRAAWFPMRYFPLLL-VTASATTRA----FSIPLVSQDF----PFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKL 576
            ++V+R  ++  +   G  G + AL VA  +  P    S  P       P+R +PL+  V  S  T A     ++P VS       PF V+G +  W YLRF  +       GD+S+EF LV+  P V   +V PL +F + V  L GFFK R A+ P           P    I     K DPIAERR+ARAM+ LDEK AKL
Sbjct:  109 YVVFRDPIYLEKSFSGFTGGITALLVAFMKPTPLATASLFPG-----VPLRCYPLIACVVFSLCTLAGMMFTAVPAVSSILVSAGPFSVLGGYFGWYYLRFL-NKNRDRTVGDVSNEFALVILLPDVCTPLVSPLANFCFNVVKLCGFFKKRAAQKPKML--------PILTEI-----KNDPIAERRKARAMRALDEKLAKL 292          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIB0_ECTSI5.650e-8967.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CJN9_9STRA4.380e-3038.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4CBN0_PYTIN3.560e-2336.41Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A7S2CKW4_9STRA8.280e-2333.68Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A024GA42_9STRA1.680e-2238.50Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A3F2RU99_9STRA3.010e-2038.05Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A485KCW3_9STRA7.530e-2034.67Aste57867_5077 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024US08_9STRA1.590e-1934.67Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
W4H9H0_9STRA4.500e-1935.47Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
M4BRC3_HYAAE5.850e-1936.45Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100506contigH-elongata_contig100506:213..2128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score274.2
Seed ortholog evalue4.7e-71
Seed eggNOG ortholog2880.D8LIB0
Preferred nameTMEM115
KEGG koko:K04859
KEGG TC8.A.18.2
KEGG Pathwayko04010,ko04260,ko04261,ko04921,ko05410,ko05412,ko05414,map04010,map04260,map04261,map04921,map05410,map05412,map05414
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005795,GO:0005798,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016192,GO:0019538,GO:0030135,GO:0030137,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032580,GO:0034645,GO:0036211,GO:0042127,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0070085,GO:0071704,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG2890@1,KOG2890@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF1751, integral membrane, eukaryotic
Ec32 orthologEc-24_001460.1
Exons5
Model size600
Cds size600
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100506.51.1prot_H-elongata_contig100506.51.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100506 213..2128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.0778086-CDS-H-elongata_contig100506:212..3081622929547.0778086-CDS-H-elongata_contig100506:212..308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100506 213..308 -
1691679063.8242142-CDS-H-elongata_contig100506:212..3081691679063.8242142-CDS-H-elongata_contig100506:212..308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100506 213..308 -
1622929547.0977592-CDS-H-elongata_contig100506:681..8291622929547.0977592-CDS-H-elongata_contig100506:681..829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100506 682..829 -
1691679063.8337948-CDS-H-elongata_contig100506:681..8291691679063.8337948-CDS-H-elongata_contig100506:681..829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100506 682..829 -
1622929547.11256-CDS-H-elongata_contig100506:1115..11901622929547.11256-CDS-H-elongata_contig100506:1115..1190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100506 1116..1190 -
1691679063.8439019-CDS-H-elongata_contig100506:1115..11901691679063.8439019-CDS-H-elongata_contig100506:1115..1190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100506 1116..1190 -
1622929547.123961-CDS-H-elongata_contig100506:1490..16541622929547.123961-CDS-H-elongata_contig100506:1490..1654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100506 1491..1654 -
1691679063.8526733-CDS-H-elongata_contig100506:1490..16541691679063.8526733-CDS-H-elongata_contig100506:1490..1654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100506 1491..1654 -
1622929547.1369433-CDS-H-elongata_contig100506:2011..21281622929547.1369433-CDS-H-elongata_contig100506:2011..2128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100506 2012..2128 -
1691679063.860295-CDS-H-elongata_contig100506:2011..21281691679063.860295-CDS-H-elongata_contig100506:2011..2128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100506 2012..2128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100506.51.1

>prot_H-elongata_contig100506.51.1 ID=prot_H-elongata_contig100506.51.1|Name=mRNA_H-elongata_contig100506.51.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp
FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDPKGSFLPNGRAAWFPMRY
FPLLLVTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPS
GDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAV
DGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKLNSKPVNRY
back to top

mRNA from alignment at H-elongata_contig100506:213..2128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100506.51.1 ID=mRNA_H-elongata_contig100506.51.1|Name=mRNA_H-elongata_contig100506.51.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1916bp|location=Sequence derived from alignment at H-elongata_contig100506:213..2128- (Himanthalia elongata Himel1 dioecious)
TTTATCGTGTATCGTGTGTGGGTTTTCTTCCCGCAGGAGATACACGGTAC GTTCGGGCTGATGGCGGCACTTGCGGTCGCCGCCACCCAGCATGATCCCA AGGGCTCGTTCCTGCCGGTAAGTTGCACAACGCACTGACCAACCCAACGG ATCTGCTTATAGAGTACACTATTGCTGCTACTACTACTACCTGCTACTAC TACTACTACTACTACTACTACTATTACTACTACTACTACTATTACTACTA CTACTACTATTACTACTACTATTACTACTACTACTACTATTACTGCTACT ATTGCTACTACTACTAATATTACTATTACTACTACTACTACTATTGCTAC TAGCTATTACTATTACTACCATTACTACTACTAATGTAATAAAAACTACT ACTTTATACTATTAATACTACTCTATACTAATATTGCTATCATTACCACG TGTTCTTGGTGTTCCCTATGCCAGAACGGTCGCGCGGCGTGGTTCCCCAT GCGTTACTTCCCGCTGCTCCTGGTGACGGCGTCGGCAACGACAAGAGCCT TCTCCATTCCGCTGGTCTCTCAGGACTTTCCCTTTGTCGTCGTGGGTGCC TTCTCGGCCTGGGTATACCTTCGCTTCTTCGCCCACATGTGAGACACGGT TCTCAATAAACGCTGGAAGAGGGGGAAGAGGAGGGGTTGGAACGCGCGAA AATAATGACGGAGGCGTTTTGCTGGAAGGGGATGATTGCCGTGCCTTGTT TTTTGTCCTCCAAGTATCATGTGAAGCCTCAACGCTGTGTTCGAAGTTTG ATTCGGGGGTCTCTTTCGGCCGGTAGCAGCGTGTTGCTCGTCGTTGTACC TGCTATGAAGCTGTTTCTGCCTCCATTCCCGTCCCGTGTTGTTTGTCGCG GTGGTTCGCCCCCCCCCCCCTTCTTCACCTCTGTGCAGCGTGGTCGGAGG GCCCTCCGGAGACATCAGCGATGAATTCCGGCTGGTCGTGTTCTTTCCAC CTGTGCTGCACTGGTAATCACATAACTACATGTTATTCCCAAGGGGTTTG GGAGGGGTTTGGGAGGGGTATTTGATCAGGACGTGGCGCGATTAATGTGT GTCATTTTCAATTATGTACGTCGGTGGCGTCAGCTGTAGGCATCACGCAC TCGTGATGTGCCTCAGCGCAAGAGTCGACCCCGTCCCTGCCCCATCCGCG CTCTCGTTTTAAACACACATCACATGCACATAATGTACCATACAACTCTT AATATTCAATTCCGTACCATCTCCCCTTCACCCCGCACCGCCTCGACAGT GTTGTGAAACCCTTGGGCGATTTTACCTACGGGGTTTTTCTACTGCTTGG GTTCTTCAAGGGGAGAGAAGCCAGGGTGCCCCTCTCGGCGGTGGACGGTC AGGGAGGCATCGACCCGTCGACTGTCGCGATCCTTCCTCCGCCCGAAGTA CGCTGTCACAACTCTCTTCCGTCATTCGTCTCTTGTATCTTTCTTGAATA TTTTTTGCCGTCCGTCTGCTGTTGACTTTTTTGTCTCTCTTTTTGTTGTT GTCGTTGCTTAAACTATCCTTGTATAATGTTTGTTTCTCGTCCTCTGTTG CTCAAACTATATTTTGTAGTTTTAGTGTATCTTATCTACCCATACGTTTG TTAAATGTTTGTTTAAAAAAAAAAAAAAAATCCTATTCTCTTGTGTTTGA ATCTGCTACTATATGTGTCTCTGCGCGCTTTTTATCCTCTCTTTTGTATA TGTTCTGTTCTCACTGCCGAATAACGCCTCGATATATATATGTATGATTT TTATTGTGCGCGCACCCCAGAAAAAAGATCCCATCGCGGAACGTCGCCGA GCTAGAGCAATGAAGCTCCTGGACGAGAAGTTCGCCAAGCTCAATTCAAA ACCGGTCAACAGGTAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig100506:213..2128-

>mRNA_H-elongata_contig100506.51.1 ID=mRNA_H-elongata_contig100506.51.1|Name=mRNA_H-elongata_contig100506.51.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig100506:213..2128- (Himanthalia elongata Himel1 dioecious)
TTTATCGTGTATCGTGTGTGGGTTTTCTTCCCGCAGGAGATACACGGTAC
GTTCGGGCTGATGGCGGCACTTGCGGTCGCCGCCACCCAGCATGATCCCA
AGGGCTCGTTCCTGCCGTTTATCGTGTATCGTGTGTGGGTTTTCTTCCCG
CAGGAGATACACGGTACGTTCGGGCTGATGGCGGCACTTGCGGTCGCCGC
CACCCAGCATGATCCCAAGGGCTCGTTCCTGCCGAACGGTCGCGCGGCGT
GGTTCCCCATGCGTTACTTCCCGCTGCTCCTGGTGACGGCGTCGGCAACG
ACAAGAGCCTTCTCCATTCCGCTGGTCTCTCAGGACTTTCCCTTTGTCGT
CGTGGGTGCCTTCTCGGCCTGGGTATACCTTCGCTTCTTCGCCCACATAA
CGGTCGCGCGGCGTGGTTCCCCATGCGTTACTTCCCGCTGCTCCTGGTGA
CGGCGTCGGCAACGACAAGAGCCTTCTCCATTCCGCTGGTCTCTCAGGAC
TTTCCCTTTGTCGTCGTGGGTGCCTTCTCGGCCTGGGTATACCTTCGCTT
CTTCGCCCACATCGTGGTCGGAGGGCCCTCCGGAGACATCAGCGATGAAT
TCCGGCTGGTCGTGTTCTTTCCACCTGTGCTGCACTGCGTGGTCGGAGGG
CCCTCCGGAGACATCAGCGATGAATTCCGGCTGGTCGTGTTCTTTCCACC
TGTGCTGCACTGTGTTGTGAAACCCTTGGGCGATTTTACCTACGGGGTTT
TTCTACTGCTTGGGTTCTTCAAGGGGAGAGAAGCCAGGGTGCCCCTCTCG
GCGGTGGACGGTCAGGGAGGCATCGACCCGTCGACTGTCGCGATCCTTCC
TCCGCCCGAATGTTGTGAAACCCTTGGGCGATTTTACCTACGGGGTTTTT
CTACTGCTTGGGTTCTTCAAGGGGAGAGAAGCCAGGGTGCCCCTCTCGGC
GGTGGACGGTCAGGGAGGCATCGACCCGTCGACTGTCGCGATCCTTCCTC
CGCCCGAAAAAAAAGATCCCATCGCGGAACGTCGCCGAGCTAGAGCAATG
AAGCTCCTGGACGAGAAGTTCGCCAAGCTCAATTCAAAACCGGTCAACAG
GTACAAAAAAGATCCCATCGCGGAACGTCGCCGAGCTAGAGCAATGAAGC
TCCTGGACGAGAAGTTCGCCAAGCTCAATTCAAAACCGGTCAACAGGTAC
back to top