mRNA_H-elongata_contig100506.51.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: D8LIB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB0_ECTSI) HSP 1 Score: 276 bits (705), Expect = 5.650e-89 Identity = 134/200 (67.00%), Postives = 161/200 (80.50%), Query Frame = 1 Query: 1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDPKGSFLPNGRAAWFPMRYFPLLLVTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKLNSKPVNRY 600 +IV R E+HG+FG++AALAVAA Q D + LP GRA WFP RY PLLLVTASA RA S+P+V++DFPFVVVGA+++WVYLRFFAH+V+G PSGD++++F+LV FFP VVKP+ DFTYGVFLLLG FKGR AR+P+S VDGQGG+DP VA LP P +KDPIAERRRARAMKLLDEKFA LN+KP NR+ Sbjct: 117 YIVTRQEYLLDLELHGSFGVLAALAVAAAQQDASATLLPAGRAPWFPTRYLPLLLVTASAMCRALSVPVVAKDFPFVVVGAYASWVYLRFFAHLVLGAPSGDVTEDFQLVNFFPLPCRRVVKPMCDFTYGVFLLLGCFKGRAARLPVSVVDGQGGVDPLVVATLPTPARKDPIAERRRARAMKLLDEKFATLNAKPANRW 316
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: A0A836CJN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJN9_9STRA) HSP 1 Score: 124 bits (311), Expect = 4.380e-30 Identity = 79/205 (38.54%), Postives = 103/205 (50.24%), Query Frame = 1 Query: 37 EIHGTFGLMAALAVAATQHDPKGSFLPNGRAAWFPMRYFPLLLVTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFF--------AHIVVGGPS-----GDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGR-----EARV-PLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKLNSKPVN 594 E+HG +GL+ ALAVA P F +R+ P+ +T S + +S DFPFV VG+++ WVYLRFF A + G GD+SD F L +F PP ++PL DF YGV LLLG F+ R AR+ S +DP+AERRRARAMKLLDEKFA+L++ N Sbjct: 125 EVHGAWGLVCALAVAFAHALPLEPLFAPPALRGFKVRHLPVTAITLSGILYGAGLRAMSTDFPFVCVGSYAGWVYLRFFHTFPPVAAATLPPGAAPTATIPGDVSDAFALAMFLPPFTRRWLRPLADFVYGVALLLGLFRARAEYAAHARLLRASXXXXXXXXXXXXXXXXXXXRARDPVAERRRARAMKLLDEKFAQLSAAEEN 329
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: A0A2D4CBN0_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBN0_PYTIN) HSP 1 Score: 103 bits (257), Expect = 3.560e-23 Identity = 75/206 (36.41%), Postives = 105/206 (50.97%), Query Frame = 1 Query: 1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDPKGSFLPNGRAAWFP---MRYFPLL---------LVTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKLNS 582 +I++R +F + G G AL VA + P + +A FP +R++PLL LV A+++ + L+ P+ V+GA+ W YLRFF + GDIS+EF LVV FP VV P+ +F++ V L G+FK R A+ S + I+ DPIAERR+ARAMK LDEK AKL S Sbjct: 109 YIIFRAPIFLKTSLSGFAGGFTALLVAYMKPTPHAT------SAMFPTIKLRFYPLLAVLFFSLCTLVAMGASSKPLRVSLIGAG-PYSVLGAYLGWYYLRFF-NKNADRSVGDISEEFGLVVLFPDCCASVVGPVANFSFSVAKLCGYFKNRSAKAA------------SALPIVTD-ASNDPIAERRKARAMKALDEKLAKLAS 293
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: A0A7S2CKW4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CKW4_9STRA) HSP 1 Score: 103 bits (256), Expect = 8.280e-23 Identity = 64/190 (33.68%), Postives = 99/190 (52.11%), Query Frame = 1 Query: 1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDPKGSFLPNGRAAWFPMRYFPLLLVTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFA 570 F+V R+ + +G GL+ ALAV P+ + LP + + P+LL S +I ++D PFVV+G +++W YLRF H G G++S++F + FPP + P +FTYGV LLG+FK R + + + P+++ P+ DP+AERRRA+A + LD K A Sbjct: 143 FVVTRMETVLFMQTYGFGGLIGALAVGLKLIAPRETPLPTVPS--LKCHHLPMLLGIVSLFCWTLNITAFAKDTPFVVIGIYASWWYLRF-VHKGRDGLVGNVSEDFAFITLFPPACRRYLSPFAEFTYGVACLLGYFKERRPALAGMPSTEETPLVPASLL----PQVHDPVAERRRAKAREQLDAKLA 325
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: A0A024GA42_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GA42_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.680e-22 Identity = 72/187 (38.50%), Postives = 98/187 (52.41%), Query Frame = 1 Query: 46 GTFGLMAALAVAATQHDPKGSFLPNGRAAWFPMRYFPLLLV------TASATTRAFSIPL----VSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKL 576 G+ G ++ L VA + + A++ MR++P LV T+ S+PL VS P+ G + W YLRF H+ P GDIS+EF+L V FP + V +G F++GV L G+FK R ++ SA+ P TV PEK DP+AERR+ARAMK LDEK AKL Sbjct: 127 GSMGTISGLLVALMKPQFNEQIV---NASFLKMRFYPFTLVLCAWFLTSLGIAFVHSMPLHSVLVSMG-PYASSGVYLGWFYLRFL-HLTPDEPLGDISEEFKLSVLFPQQMAGYVNAIGSFSFGVARLCGYFKKRPKKLGQSAL-------PFTVE----PEKIDPVAERRKARAMKALDEKLAKL 297
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: A0A3F2RU99_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RU99_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 3.010e-20 Identity = 78/205 (38.05%), Postives = 98/205 (47.80%), Query Frame = 1 Query: 1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDPKGSFLPNGRAAWFP---MRYFPL----------LLVTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKL 576 +IV+R ++ G G + AL VA + P + A FP +RY+PL + A + A SI LVS PF V+G F W YLRF + GD+SDEF L+V P V+ PL +F + V L GFFK R A+ P P I K DPIAERR+ARAMK LDEK AKL Sbjct: 109 YIVFRDPIYLEANFSGFTGGITALLVAYMKPTPYAA------APLFPGVQLRYYPLVASGVFSFCSIFGLAFSAGPAVSIMLVSAG-PFSVLGGFFGWYYLRFL-NKNRDQTVGDVSDEFALIVLLPDFSKPVIGPLANFCFSVVKLCGFFKKRAAQKPKML--------PILTEI-----KNDPIAERRKARAMKALDEKLAKL 292
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: A0A485KCW3_9STRA (Aste57867_5077 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCW3_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 7.530e-20 Identity = 69/199 (34.67%), Postives = 95/199 (47.74%), Query Frame = 1 Query: 1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDPKGSFLPNGRAAWFPMRYFPLLLVTASAT-------TRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKL 576 +I++R F + G G + A+ VA + +P + + + RY+PL++ T TRA I +V P+ + G + W YLRF A G GD SD F L V FPP L ++P+ D + V L G F R+A S TVA+ DP+AERR+ARAMK LDEK AKL Sbjct: 113 YIIFRNPFFLRTGVSGFTGGLVAMLVALAKENPMQTLVVPKLSC----RYYPLIVTLVCLTLSFLAVFTRA-EILIVGAG-PYALSGFYFGWFYLRFLAKNA-DGSVGDTSDAFSLAVLFPPFLRTTIQPICDLVFNVARLCGLFSNRDAAAAASL---------PTVAVA-----SDPVAERRKARAMKALDEKLAKL 290
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: A0A024US08_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024US08_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.590e-19 Identity = 69/199 (34.67%), Postives = 94/199 (47.24%), Query Frame = 1 Query: 1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDP-KGSFLPNGRAAWFPMRYFPLLL------VTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKL 576 +IV+R F + G G + A+ VA + +P + +P P RY+PL+L ++ A I +V P+ V G + W YLRF A G GD S+ F L V FP L + P+ DF + V L G FK R+A+ + A LP DP+ ERR+ARAMK LDEK AKL Sbjct: 113 YIVFRNAFFLRTGVSGFTGGLVAMLVALVKENPVQALVIPK-----VPCRYYPLMLTVLCLAMSIGAVLTKAEILIVGAG-PYAVSGLYFGWFYLRFIAKNA-DGSKGDTSEAFSLTVLFPSFLKPSLAPIFDFFFNVAKLCGLFKYRDAQ--------------AAAASLPKTFPSDPVTERRKARAMKALDEKLAKL 290
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: W4H9H0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9H0_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 4.500e-19 Identity = 72/203 (35.47%), Postives = 95/203 (46.80%), Query Frame = 1 Query: 1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDPKGSF-LPNGRAAWFPMRYFPLLL------VTASATTRAFSIPLVSQDFPFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKLNSKP 588 +IV+R F + G G + A+ VA + +P +P P RY+PLLL ++ A I +V P+ V G + WVYLRF A G GD SD F L V FP L + PL DF + V L GFF+ R+ + G + A+ DP+ ERR+ARAMK LDEK AKL P Sbjct: 113 YIVFRSPFFLRTGVSGFTGGLVAMLVALVKENPVQPLGIPK-----LPCRYYPLLLTVLCVAMSVGAVLTKNEILIVGAG-PYAVSGLYFGWVYLRFVAKNP-DGSVGDESDAFSLTVLFPAFLKPSLAPLFDFCFNVSKLCGFFQHRQGH------NATSGSSLAKAALA-----SDPVTERRKARAMKALDEKLAKLAVMP 297
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Match: M4BRC3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRC3_HYAAE) HSP 1 Score: 92.4 bits (228), Expect = 5.850e-19 Identity = 74/203 (36.45%), Postives = 99/203 (48.77%), Query Frame = 1 Query: 1 FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDP--KGSFLPNGRAAWFPMRYFPLLL-VTASATTRA----FSIPLVSQDF----PFVVVGAFSAWVYLRFFAHIVVGGPSGDISDEFRLVVFFPPVLHCVVKPLGDFTYGVFLLLGFFKGREARVPLSAVDGQGGIDPSTVAILPPPEKKDPIAERRRARAMKLLDEKFAKL 576 ++V+R ++ + G G + AL VA + P S P P+R +PL+ V S T A ++P VS PF V+G + W YLRF + GD+S+EF LV+ P V +V PL +F + V L GFFK R A+ P P I K DPIAERR+ARAM+ LDEK AKL Sbjct: 109 YVVFRDPIYLEKSFSGFTGGITALLVAFMKPTPLATASLFPG-----VPLRCYPLIACVVFSLCTLAGMMFTAVPAVSSILVSAGPFSVLGGYFGWYYLRFL-NKNRDRTVGDVSNEFALVILLPDVCTPLVSPLANFCFNVVKLCGFFKKRAAQKPKML--------PILTEI-----KNDPIAERRKARAMRALDEKLAKL 292 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100506.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100506.51.1 >prot_H-elongata_contig100506.51.1 ID=prot_H-elongata_contig100506.51.1|Name=mRNA_H-elongata_contig100506.51.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp FIVYRVWVFFPQEIHGTFGLMAALAVAATQHDPKGSFLPNGRAAWFPMRYback to top mRNA from alignment at H-elongata_contig100506:213..2128- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100506.51.1 ID=mRNA_H-elongata_contig100506.51.1|Name=mRNA_H-elongata_contig100506.51.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1916bp|location=Sequence derived from alignment at H-elongata_contig100506:213..2128- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100506:213..2128- >mRNA_H-elongata_contig100506.51.1 ID=mRNA_H-elongata_contig100506.51.1|Name=mRNA_H-elongata_contig100506.51.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig100506:213..2128- (Himanthalia elongata Himel1 dioecious)back to top |