mRNA_H-elongata_contig100450.47.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100450.47.1
Unique NamemRNA_H-elongata_contig100450.47.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: D7FU02_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU02_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.450e-30
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
            QLKASLAEQLSV+QLR EFR YIE KVAQELVDFYLDSLDREE+K++F RQA TMRIV +YIRE APDQVN
Sbjct:   26 QLKASLAEQLSVEQLRAEFRRYIETKVAQELVDFYLDSLDREEIKEYFTRQAVTMRIVAQYIREGAPDQVN 96
[Close]
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: D7FIS3_ECTSI (Similar to retinally abundant regulator of G-protein signaling hRGS-r n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS3_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 6.450e-29
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
            QLKASLAEQLSV+QLR EFR YI+ KVAQEL+DFYLDSLDREEV  FFERQAATMRIV+RYIRE+APDQVN
Sbjct:  118 QLKASLAEQLSVEQLRDEFRQYIKTKVAQELIDFYLDSLDREEVMGFFERQAATMRIVERYIREDAPDQVN 188
[Close]
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: D7FTZ6_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ6_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 6.470e-29
Identity = 59/71 (83.10%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
            QLKASLAEQLSV+QLR+EFR YIE KVAQELVDFYLDSLDREE+K +F RQAATMRIV++YIRE +PDQVN
Sbjct:  265 QLKASLAEQLSVEQLRVEFRRYIETKVAQELVDFYLDSLDREEIKGYFGRQAATMRIVEQYIREGSPDQVN 335
[Close]
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: D7FTZ5_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.980e-28
Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
            QLKA+LA+QLSV+QLR+EFR YIEAKVA ELVDFYLDSLDREE+ ++F RQAATMRIVD+YIRE APDQVN
Sbjct:  244 QLKANLAQQLSVEQLRVEFRRYIEAKVAHELVDFYLDSLDREEIMEYFARQAATMRIVDQYIREGAPDQVN 314
[Close]
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: A0A6H5KAT5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.240e-28
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:    1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
            QLKASLAEQLSVDQLR EFR YI+ KVAQEL+DFYLDSLDREEV DFFERQAATMRIVD+YI+E A DQVN
Sbjct:  271 QLKASLAEQLSVDQLRDEFRRYIKTKVAQELIDFYLDSLDREEVADFFERQAATMRIVDQYIKEGARDQVN 341
[Close]
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: A0A6H5JJQ0_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 5.940e-28
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
            QLKASLAEQLSV+QLR EFR YIE KVAQELVDFYLDSLDREE+K++F RQA TMRIV +YIRE APDQVN
Sbjct:  309 QLKASLAEQLSVEQLRAEFRRYIETKVAQELVDFYLDSLDREEIKEYFARQAVTMRIVAQYIREGAPDQVN 379
[Close]
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: D7FU07_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU07_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 6.870e-28
Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:    1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
            QLKASLAEQLSV+QLR EFR YIE KVAQEL+DFY++SLDREE+K++F RQAATMRIVD+YIRE A +QVN
Sbjct:   36 QLKASLAEQLSVEQLRDEFRKYIEMKVAQELMDFYIESLDREEIKEYFPRQAATMRIVDQYIREGAAEQVN 106
[Close]
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: D7FIR7_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR7_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 9.760e-28
Identity = 61/71 (85.92%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
            QLKASLAEQLSVDQLR EFR YI+ KVAQELVDFYLDSLDREEV  FFERQAATMRIVD+YI+E A DQVN
Sbjct:   26 QLKASLAEQLSVDQLRDEFRRYIKTKVAQELVDFYLDSLDREEVAGFFERQAATMRIVDQYIKEGARDQVN 96
[Close]
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: D7FTZ7_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.240e-27
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
            QLKASLAEQLSV QLR+EFR Y+E  VAQELVDFYLDSLDREE+K +F RQAATMRIV++YIRE +PDQVN
Sbjct:  241 QLKASLAEQLSVQQLRVEFRKYVETMVAQELVDFYLDSLDREEIKGYFGRQAATMRIVEQYIREGSPDQVN 311
[Close]
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: A0A6H5K0N5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0N5_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.090e-27
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    4 LKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
            LKASLAEQLSV QLR+EFR Y+E  VAQELVDFYLDSLDREE+K +F RQAATMRIV++YIRE  PDQVN
Sbjct:  191 LKASLAEQLSVQQLRVEFRRYVETMVAQELVDFYLDSLDREEIKGYFARQAATMRIVEQYIREGGPDQVN 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FU02_ECTSI3.450e-3083.10Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
D7FIS3_ECTSI6.450e-2985.92Similar to retinally abundant regulator of G-prote... [more]
D7FTZ6_ECTSI6.470e-2983.10Similar to regulator of G-protein signaling 16 n=1... [more]
D7FTZ5_ECTSI2.980e-2881.69Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5KAT5_9PHAE3.240e-2885.92RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JJQ0_9PHAE5.940e-2883.10RGS domain-containing protein n=3 Tax=Ectocarpus T... [more]
D7FU07_ECTSI6.870e-2878.87Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
D7FIR7_ECTSI9.760e-2885.92RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTZ7_ECTSI2.240e-2780.28Similar to regulator of G-protein signaling 16 n=1... [more]
A0A6H5K0N5_9PHAE5.090e-2780.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100450contigH-elongata_contig100450:1400..1941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue5.8e-24
Seed eggNOG ortholog2880.D7FU02
Preferred nameRGS1
KEGG koko:K16449
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.8069127-CDS-H-elongata_contig100450:1399..14591622929546.8069127-CDS-H-elongata_contig100450:1399..1459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100450 1400..1459 -
1691679063.635737-CDS-H-elongata_contig100450:1399..14591691679063.635737-CDS-H-elongata_contig100450:1399..1459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100450 1400..1459 -
1622929546.8195248-CDS-H-elongata_contig100450:1788..19411622929546.8195248-CDS-H-elongata_contig100450:1788..1941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100450 1789..1941 -
1691679063.672351-CDS-H-elongata_contig100450:1788..19411691679063.672351-CDS-H-elongata_contig100450:1788..1941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100450 1789..1941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100450.47.1prot_H-elongata_contig100450.47.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100450 1400..1941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100450.47.1

>prot_H-elongata_contig100450.47.1 ID=prot_H-elongata_contig100450.47.1|Name=mRNA_H-elongata_contig100450.47.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFER
QAATMRIVDRYIRENAPDQVN
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mRNA from alignment at H-elongata_contig100450:1400..1941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100450.47.1 ID=mRNA_H-elongata_contig100450.47.1|Name=mRNA_H-elongata_contig100450.47.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=542bp|location=Sequence derived from alignment at H-elongata_contig100450:1400..1941- (Himanthalia elongata Himel1 dioecious)
CAGTTGAAGGCCAGCCTCGCGGAACAGCTGTCGGTGGATCAGCTGAGGAT
CGAGTTCAGATGCTACATTGAGGCCAAGGTTGCTCAGGAGCTCGTCGACT
TTTATCTTGACTCGCTTGATAGAGAAGAAGTAAAAGACTTCTTTGAGCGC
CAGGTAATTTCTCGACGGTACCTTAACCTTCCACAGTTCGCCTCTAATAA
CCCCACCCTTTTTCCTTTATCTCTCCAACCCTCTCCAACCCCGCTTTACC
AACGACATCCTGCCCAGGAACCTTAAGAGAGTTACTTTATTTATCTCCAA
TCACTCGCTAGCGTGTCGAGTAAAGCTACATTTAGGTATTCCTGCGCTTT
ACACAGCATGATGAGCGGTCTTTACTACCGCTACGAAGAGTCGCGTCCTC
ACGATAAAAAATATTTTCTGCATCACTACCCTTCCACGCGTTCGTTCCGT
TCGGCTTTTCTTGTGTATGAGGTTTCCTACAGGCGGCGACAATGCGAATC
GTGGATAGGTACATTCGAGAGAATGCCCCAGACCAGGTAAAC
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Coding sequence (CDS) from alignment at H-elongata_contig100450:1400..1941-

>mRNA_H-elongata_contig100450.47.1 ID=mRNA_H-elongata_contig100450.47.1|Name=mRNA_H-elongata_contig100450.47.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig100450:1400..1941- (Himanthalia elongata Himel1 dioecious)
CAGTTGAAGGCCAGCCTCGCGGAACAGCTGTCGGTGGATCAGCTGAGGAT
CGAGTTCAGATGCTACATTGAGGCCAAGGTTGCTCAGGAGCTCGTCGACT
TTTATCTTGACTCGCTTGATAGAGAAGAAGTAAAAGACTTCTTTGAGCGC
CAGCAGTTGAAGGCCAGCCTCGCGGAACAGCTGTCGGTGGATCAGCTGAG
GATCGAGTTCAGATGCTACATTGAGGCCAAGGTTGCTCAGGAGCTCGTCG
ACTTTTATCTTGACTCGCTTGATAGAGAAGAAGTAAAAGACTTCTTTGAG
CGCCAGGCGGCGACAATGCGAATCGTGGATAGGTACATTCGAGAGAATGC
CCCAGACCAGGTAAACGCGGCGACAATGCGAATCGTGGATAGGTACATTC
GAGAGAATGCCCCAGACCAGGTAAAC
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