mRNA_H-elongata_contig100450.47.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: D7FU02_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU02_ECTSI) HSP 1 Score: 113 bits (282), Expect = 3.450e-30 Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 1 Query: 1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
QLKASLAEQLSV+QLR EFR YIE KVAQELVDFYLDSLDREE+K++F RQA TMRIV +YIRE APDQVN
Sbjct: 26 QLKASLAEQLSVEQLRAEFRRYIETKVAQELVDFYLDSLDREEIKEYFTRQAVTMRIVAQYIREGAPDQVN 96
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: D7FIS3_ECTSI (Similar to retinally abundant regulator of G-protein signaling hRGS-r n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS3_ECTSI) HSP 1 Score: 115 bits (289), Expect = 6.450e-29 Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 1 Query: 1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
QLKASLAEQLSV+QLR EFR YI+ KVAQEL+DFYLDSLDREEV FFERQAATMRIV+RYIRE+APDQVN
Sbjct: 118 QLKASLAEQLSVEQLRDEFRQYIKTKVAQELIDFYLDSLDREEVMGFFERQAATMRIVERYIREDAPDQVN 188
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: D7FTZ6_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ6_ECTSI) HSP 1 Score: 115 bits (287), Expect = 6.470e-29 Identity = 59/71 (83.10%), Postives = 66/71 (92.96%), Query Frame = 1 Query: 1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
QLKASLAEQLSV+QLR+EFR YIE KVAQELVDFYLDSLDREE+K +F RQAATMRIV++YIRE +PDQVN
Sbjct: 265 QLKASLAEQLSVEQLRVEFRRYIETKVAQELVDFYLDSLDREEIKGYFGRQAATMRIVEQYIREGSPDQVN 335
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: D7FTZ5_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI) HSP 1 Score: 114 bits (285), Expect = 2.980e-28 Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 1 Query: 1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
QLKA+LA+QLSV+QLR+EFR YIEAKVA ELVDFYLDSLDREE+ ++F RQAATMRIVD+YIRE APDQVN
Sbjct: 244 QLKANLAQQLSVEQLRVEFRRYIEAKVAHELVDFYLDSLDREEIMEYFARQAATMRIVDQYIREGAPDQVN 314
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: A0A6H5KAT5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE) HSP 1 Score: 115 bits (287), Expect = 3.240e-28 Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 1 Query: 1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
QLKASLAEQLSVDQLR EFR YI+ KVAQEL+DFYLDSLDREEV DFFERQAATMRIVD+YI+E A DQVN
Sbjct: 271 QLKASLAEQLSVDQLRDEFRRYIKTKVAQELIDFYLDSLDREEVADFFERQAATMRIVDQYIKEGARDQVN 341
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: A0A6H5JJQ0_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE) HSP 1 Score: 113 bits (282), Expect = 5.940e-28 Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 1 Query: 1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
QLKASLAEQLSV+QLR EFR YIE KVAQELVDFYLDSLDREE+K++F RQA TMRIV +YIRE APDQVN
Sbjct: 309 QLKASLAEQLSVEQLRAEFRRYIETKVAQELVDFYLDSLDREEIKEYFARQAVTMRIVAQYIREGAPDQVN 379
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: D7FU07_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU07_ECTSI) HSP 1 Score: 108 bits (270), Expect = 6.870e-28 Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 1 Query: 1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
QLKASLAEQLSV+QLR EFR YIE KVAQEL+DFY++SLDREE+K++F RQAATMRIVD+YIRE A +QVN
Sbjct: 36 QLKASLAEQLSVEQLRDEFRKYIEMKVAQELMDFYIESLDREEIKEYFPRQAATMRIVDQYIREGAAEQVN 106
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: D7FIR7_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR7_ECTSI) HSP 1 Score: 112 bits (281), Expect = 9.760e-28 Identity = 61/71 (85.92%), Postives = 64/71 (90.14%), Query Frame = 1 Query: 1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
QLKASLAEQLSVDQLR EFR YI+ KVAQELVDFYLDSLDREEV FFERQAATMRIVD+YI+E A DQVN
Sbjct: 26 QLKASLAEQLSVDQLRDEFRRYIKTKVAQELVDFYLDSLDREEVAGFFERQAATMRIVDQYIKEGARDQVN 96
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: D7FTZ7_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI) HSP 1 Score: 111 bits (278), Expect = 2.240e-27 Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 1 Query: 1 QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
QLKASLAEQLSV QLR+EFR Y+E VAQELVDFYLDSLDREE+K +F RQAATMRIV++YIRE +PDQVN
Sbjct: 241 QLKASLAEQLSVQQLRVEFRKYVETMVAQELVDFYLDSLDREEIKGYFGRQAATMRIVEQYIREGSPDQVN 311
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Match: A0A6H5K0N5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0N5_9PHAE) HSP 1 Score: 110 bits (274), Expect = 5.090e-27 Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 1 Query: 4 LKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERQAATMRIVDRYIRENAPDQVN 213
LKASLAEQLSV QLR+EFR Y+E VAQELVDFYLDSLDREE+K +F RQAATMRIV++YIRE PDQVN
Sbjct: 191 LKASLAEQLSVQQLRVEFRRYVETMVAQELVDFYLDSLDREEIKGYFARQAATMRIVEQYIREGGPDQVN 260 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100450.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100450.47.1 >prot_H-elongata_contig100450.47.1 ID=prot_H-elongata_contig100450.47.1|Name=mRNA_H-elongata_contig100450.47.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp QLKASLAEQLSVDQLRIEFRCYIEAKVAQELVDFYLDSLDREEVKDFFERback to top mRNA from alignment at H-elongata_contig100450:1400..1941- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100450.47.1 ID=mRNA_H-elongata_contig100450.47.1|Name=mRNA_H-elongata_contig100450.47.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=542bp|location=Sequence derived from alignment at H-elongata_contig100450:1400..1941- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100450:1400..1941- >mRNA_H-elongata_contig100450.47.1 ID=mRNA_H-elongata_contig100450.47.1|Name=mRNA_H-elongata_contig100450.47.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig100450:1400..1941- (Himanthalia elongata Himel1 dioecious)back to top |