mRNA_H-elongata_contig10045.46.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10045.46.1
Unique NamemRNA_H-elongata_contig10045.46.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10045.46.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 5.720e-24
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 1
Query:    1 LDWWRVRCTNFPHLANLARRVLAIPATQAESERLFSCAGNIITKNHNNL 147
            LDWWRVRC +FPHLANLARRVLAIPATQAESERLFSCAGNI+TKN NNL
Sbjct:  224 LDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNL 272          
BLAST of mRNA_H-elongata_contig10045.46.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.920e-16
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 1
Query:   25 TNFPHLANLARRVLAIPATQAESERLFSCAGNIITKNHNNL 147
            T+FPHLANLARRVLAIPATQA+SERLFSCAGNI+TKN NNL
Sbjct:  152 TDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNL 192          
BLAST of mRNA_H-elongata_contig10045.46.1 vs. uniprot
Match: A0A015I940_RHIIW (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015I940_RHIIW)

HSP 1 Score: 67.0 bits (162), Expect = 1.030e-11
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    1 LDWWRVRCTNFPHLANLARRVLAIPATQAESERLFSCAGNIITKNHNNL 147
            LDWWR+R  NFP LA LAR+ LAIPAT   SERLFS AGN+I+    +L
Sbjct:  662 LDWWRIRSQNFPKLAKLARKYLAIPATSVSSERLFSDAGNLISAKRTSL 710          
BLAST of mRNA_H-elongata_contig10045.46.1 vs. uniprot
Match: U9UP26_RHIID (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9UP26_RHIID)

HSP 1 Score: 62.8 bits (151), Expect = 1.030e-11
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    1 LDWWRVRCTNFPHLANLARRVLAIPATQAESERLFSCAGNIITKNHNNL 147
            LDWW++   NFP LA LAR+ LAIPAT   SERLFS AGN+I+    NL
Sbjct:   16 LDWWQICFQNFPKLAKLARKYLAIPATSVSSERLFSNAGNVISVKRINL 64          
BLAST of mRNA_H-elongata_contig10045.46.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 9.150e-11
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1
Query:    1 LDWWRVRCTNFPHLANLARRVLAIPATQAESERLFSCAGNIITK 132
            L+WWRV+   +P LA+LARRVL IPA QA+SER+FS AG ++TK
Sbjct:  481 LEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTK 524          
BLAST of mRNA_H-elongata_contig10045.46.1 vs. uniprot
Match: UPI0011C102C8 (zinc finger BED domain-containing protein 1-like n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C102C8)

HSP 1 Score: 63.5 bits (153), Expect = 1.210e-10
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1
Query:    1 LDWWRVRCTNFPHLANLARRVLAIPATQAESERLFSCAGNIIT 129
            L+WWR+  TNFP LANLA++ + IPAT A SER FS  GNI+T
Sbjct:  222 LEWWRLHQTNFPRLANLAKKYICIPATSAPSERAFSTGGNIVT 264          
BLAST of mRNA_H-elongata_contig10045.46.1 vs. uniprot
Match: A0A1X7SR93_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SR93_AMPQE)

HSP 1 Score: 60.8 bits (146), Expect = 1.780e-10
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1
Query:    4 DWWRVRCTNFPHLANLARRVLAIPATQAESERLFSCAGNIITKNHNNL 147
            +WWR     FPHL+++AR++L IPAT   SER+FS AG I+TK   NL
Sbjct:   70 EWWRKNQEMFPHLSDIARKLLCIPATSVPSERIFSVAGGIVTKKRTNL 117          
BLAST of mRNA_H-elongata_contig10045.46.1 vs. uniprot
Match: A0A669CH32_ORENI (BED-type domain-containing protein n=4 Tax=Ovalentaria TaxID=1489908 RepID=A0A669CH32_ORENI)

HSP 1 Score: 62.4 bits (150), Expect = 4.360e-10
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 1
Query:    1 LDWWRVRCTNFPHLANLARRVLAIPATQAESERLFSCAGNIITK 132
            L WW+   T FP LANLA+  LA+PAT   SERLFS AGNI+TK
Sbjct:  564 LTWWKNNATRFPTLANLAKSYLAVPATSTPSERLFSVAGNIVTK 607          
BLAST of mRNA_H-elongata_contig10045.46.1 vs. uniprot
Match: UPI00077D09EE (zinc finger BED domain-containing protein 1-like n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=UPI00077D09EE)

HSP 1 Score: 60.8 bits (146), Expect = 7.570e-10
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 1
Query:    1 LDWWRVRCTNFPHLANLARRVLAIPATQAESERLFSCAGNIITK 132
            L WW+   T FP LA LA+  LA+PAT A SERLFS AGNI+TK
Sbjct:  165 LTWWKNNATRFPTLATLAKSYLAVPATWAPSERLFSVAGNIVTK 208          
BLAST of mRNA_H-elongata_contig10045.46.1 vs. uniprot
Match: C7ZQR5_FUSV7 (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4) TaxID=660122 RepID=C7ZQR5_FUSV7)

HSP 1 Score: 57.4 bits (137), Expect = 7.780e-10
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1
Query:    1 LDWWRVRCTNFPHLANLARRVLAIPATQAESERLFSCAGNIITKNHNNL 147
            L WW+     FP L+ LARR LAIPAT A  ER+FS + NIIT+N N +
Sbjct:    1 LIWWKSNSNRFPILSILARRYLAIPATSASIERIFSISSNIITRNRNRI 49          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10045.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE5.720e-2491.84Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JPB0_9PHAE1.920e-1690.24Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A015I940_RHIIW1.030e-1163.27Dimer_Tnp_hAT domain-containing protein n=2 Tax=Rh... [more]
U9UP26_RHIID1.030e-1161.22Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rh... [more]
A0A6H5JHP9_9PHAE9.150e-1163.64Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
UPI0011C102C81.210e-1062.79zinc finger BED domain-containing protein 1-like n... [more]
A0A1X7SR93_AMPQE1.780e-1054.17Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A669CH32_ORENI4.360e-1063.64BED-type domain-containing protein n=4 Tax=Ovalent... [more]
UPI00077D09EE7.570e-1063.64zinc finger BED domain-containing protein 1-like n... [more]
C7ZQR5_FUSV77.780e-1055.10Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10045contigH-elongata_contig10045:1243..1389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog588596.U9USH6
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.769568-CDS-H-elongata_contig10045:1242..13891622929546.769568-CDS-H-elongata_contig10045:1242..1389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10045 1243..1389 +
1691679063.6213322-CDS-H-elongata_contig10045:1242..13891691679063.6213322-CDS-H-elongata_contig10045:1242..1389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10045 1243..1389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10045.46.1prot_H-elongata_contig10045.46.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10045 1243..1389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10045.46.1

>prot_H-elongata_contig10045.46.1 ID=prot_H-elongata_contig10045.46.1|Name=mRNA_H-elongata_contig10045.46.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
LDWWRVRCTNFPHLANLARRVLAIPATQAESERLFSCAGNIITKNHNNL
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mRNA from alignment at H-elongata_contig10045:1243..1389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10045.46.1 ID=mRNA_H-elongata_contig10045.46.1|Name=mRNA_H-elongata_contig10045.46.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig10045:1243..1389+ (Himanthalia elongata Himel1 dioecious)
TTGGACTGGTGGCGGGTACGGTGCACAAACTTCCCGCATTTGGCCAACCT CGCCCGCCGTGTGCTGGCGATCCCCGCCACTCAGGCAGAGTCCGAGCGTC TGTTCTCCTGCGCTGGAAACATCATCACGAAGAATCACAACAACTTG
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Coding sequence (CDS) from alignment at H-elongata_contig10045:1243..1389+

>mRNA_H-elongata_contig10045.46.1 ID=mRNA_H-elongata_contig10045.46.1|Name=mRNA_H-elongata_contig10045.46.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig10045:1243..1389+ (Himanthalia elongata Himel1 dioecious)
TTGGACTGGTGGCGGGTACGGTGCACAAACTTCCCGCATTTGGCCAACCT
CGCCCGCCGTGTGCTGGCGATCCCCGCCACTCAGGCAGAGTCCGAGCGTC
TGTTCTCCTGCGCTGGAAACATCATCACGAAGAATCACAACAACTTGTTG
GACTGGTGGCGGGTACGGTGCACAAACTTCCCGCATTTGGCCAACCTCGC
CCGCCGTGTGCTGGCGATCCCCGCCACTCAGGCAGAGTCCGAGCGTCTGT
TCTCCTGCGCTGGAAACATCATCACGAAGAATCACAACAACTTG
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