Homology
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match:
D7G7R3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7R3_ECTSI)
HSP 1 Score: 141 bits (356), Expect = 7.260e-36
Identity = 86/179 (48.04%), Postives = 108/179 (60.34%), Query Frame = 2
Query: 188 AKLELVGGADPNTVIPEVISLSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFGGAADIPVGTRFGGTGSHIRYRFIYE------HNSRKRR--QPTETGTXXXXXXXXPKTDAESSSPPMSGGTSGWLALSPIK 700
AKL LV + V PE+I LS E +GR++K DV +D PT TISR+HA+I + + T+ +RDL STNGVFVN FK+ EQ L+HGDVVQFGGAADIPVGTRFGGTGS IRYRF ++ NS++RR P T DA + +S G+S + P K
Sbjct: 6 AKLVLVASTEDYNV-PEIIQLSRESTVLGRSSKTCDVTLDAAPTKTISRKHAEIFCGKGKRGPKTYTLRDLGSTNGVFVNEFKVQEQRLRHGDVVQFGGAADIPVGTRFGGTGSRIRYRFEHKLAGSPNTNSKRRRGSNPDAPATNRPKIVRADTLDAADTLRAISNGSSVTRGIGPDK 183
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match:
A0A6H5KYS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS2_9PHAE)
HSP 1 Score: 117 bits (293), Expect = 7.410e-27
Identity = 63/110 (57.27%), Postives = 77/110 (70.00%), Query Frame = 2
Query: 257 EKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFGGAADIPVGTRFGGTGSHIRYRFIYEH-NSRKRRQP 583
E +GR+++ DV +D PT TISR+HA+I + T+ +RDL STNGVFVN FK+ EQ L+HGDVVQFGGAADIPVGTRFGGTGS IR NS++RR P
Sbjct: 43 ESTVLGRSSRTCDVTLDAAPTKTISRKHAEIFCGNGRRGPKTYTLRDLGSTNGVFVNEFKVQEQRLRHGDVVQFGGAADIPVGTRFGGTGSRIRCSARSPTPNSKRRRGP 152
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match:
A0A5S4ZWP6_9FIRM (Type III secretion system (T3SS) inner membrane Yop/YscD-like protein n=1 Tax=Desulfallas thermosapovorans DSM 6562 TaxID=1121431 RepID=A0A5S4ZWP6_9FIRM)
HSP 1 Score: 66.2 bits (160), Expect = 2.350e-9
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 2
Query: 194 LELVGGADPNTVIPEVISLSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFG 481
LE+V GA + + L ++TIGR ++ D+ + P N+ISRRHA I+RT G FVIRD +STNG +VNG K+++ L HGDVV+ G
Sbjct: 155 LEVVEGA----LAGKKFVLEGNQVTIGRG-EICDICL---PDNSISRRHAVINRT-----GRHFVIRDRSSTNGTYVNGVKVAQIELSHGDVVKMG 237
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match:
A0A7V9ELN6_9ACTN (DUF3662 and FHA domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9ELN6_9ACTN)
HSP 1 Score: 64.7 bits (156), Expect = 1.120e-8
Identity = 49/137 (35.77%), Postives = 76/137 (55.47%), Query Frame = 2
Query: 125 RCLTSQRAQRRLCRLCNMDTHAKLELVGGADPNTVIP-EVISLSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFGGAA----DIPVGTRFGG 520
R ++S A+R L + AKL ++G + + P E IS++ + IGR + V V+ D + +SRRHA+++R +G +V++DL STNG FVNG + +EQTL GD + FG + +P G GG
Sbjct: 145 RAISSNTAER----LGIASSGAKLVVLGDDEGDGAAPKESISITRTPIIIGRLSNVDVVLAD----SNVSRRHAELAR-----DGSRWVLKDLGSTNGTFVNGARATEQTLTSGDRLTFGSSELVFETVPEGRDSGG 268
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match:
A0A538CVJ5_9ACTN (FHA domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CVJ5_9ACTN)
HSP 1 Score: 61.2 bits (147), Expect = 1.690e-8
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 2
Query: 209 GADPNTVIP--EVISLSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFGGAADI 496
GA V+P + + L +TIGR + + I L TN +SR+HA++ +G FV+ DL STNG FVNG +I++ L GDV+ FGGAA I
Sbjct: 25 GAVGTLVLPTGQRVILGEFVLTIGR---LPECTITLADTN-VSRKHAEVR-----PDGAGFVLSDLGSTNGTFVNGVRITQHELADGDVITFGGAAKI 113
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match:
R4KHZ9_9FIRM (FHA domain-containing protein n=1 Tax=Desulfoscipio gibsoniae DSM 7213 TaxID=767817 RepID=R4KHZ9_9FIRM)
HSP 1 Score: 62.0 bits (149), Expect = 7.660e-8
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 2
Query: 194 LELVGGADPNTVIPEVISLSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFG 481
LE+V GA + + +L + + IGR ++ D+ + P N+ISRRHA +SRT G FVI+D +STNG +VNG K++E+ L GD+++ G
Sbjct: 158 LEVVEGA----LAGKRFTLDSSQAVIGRG-EICDICL---PDNSISRRHAALSRT-----GRHFVIKDRSSTNGTYVNGVKVTERELVDGDIIKMG 240
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match:
A0A2E4X269_9DELT (FHA domain-containing protein n=2 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E4X269_9DELT)
HSP 1 Score: 58.9 bits (141), Expect = 1.340e-7
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 2
Query: 215 DPNTVIPEVISLSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFG 481
DP+ + I + +E+ +GR + VD++I P + +SR HAQI V++ FV+ DL STNG FVNG +I L GD +QFG
Sbjct: 29 DPDGTMGPPIEMIDERFLLGRGSD-VDMMI---PDSQVSRHHAQI-----VRQKSEFVVEDLGSTNGTFVNGVRIKRCRLTPGDQLQFG 108
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match:
Q017F0_OSTTA (E3 ubiquitin-protein ligase CHFR n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q017F0_OSTTA)
HSP 1 Score: 61.2 bits (147), Expect = 3.060e-7
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 2
Query: 206 GGADPNTVIPEVISLSNEKM--TIGRNTKVVDVVIDLTPTNTI-SRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKI---SEQTLQHGDVVQFGGAADIPVGTRFGGTGSHIRYRFI 550
G D +P + S+ ++ TIGR+ VDV +D T + SRRHA ++ C +GD +RDLA+TNG FVNG +I S+ L+ GDVV FGG V G + R+R++
Sbjct: 40 GKDDDTREVPGLPRASDSRVVITIGRDATKVDVAMDCTTIPLLLSRRHAHLT---C--DGDAHYVRDLATTNGTFVNGSRIEAKSDVALRDGDVVAFGGPRY--VARNAGKLANPFRFRYV 153
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match:
A0A2E6VV18_9DELT (GGDEF domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E6VV18_9DELT)
HSP 1 Score: 60.5 bits (145), Expect = 3.700e-7
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 2
Query: 242 ISLSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFG 481
+ + E++T+GR+ DV++D +SRRHA+I +KEGDT+ + DL STNGVFVNG K+ L GD +Q G
Sbjct: 32 LKIEKEELTLGRSMD-ADVLLD---NEGVSRRHARI-----LKEGDTYWLEDLGSTNGVFVNGEKLDRTKLFDGDRIQIG 102
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match:
A0A1G1HWE9_9BACT (FHA domain-containing protein n=1 Tax=Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17 TaxID=1801712 RepID=A0A1G1HWE9_9BACT)
HSP 1 Score: 57.4 bits (137), Expect = 4.890e-7
Identity = 39/102 (38.24%), Postives = 53/102 (51.96%), Query Frame = 2
Query: 203 VGGADPNTVIPEVIS---------LSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFG 481
+ GADP V+S L+NE IGR+ + D+VID +SRRHA+I R +++ DL+S NGV+VN K+ L HGDV Q G
Sbjct: 15 LSGADPRVPALNVLSGPLEGREYRLTNELYVIGRDPE-SDIVIDQ---REVSRRHAKIMRM-----ASEYLLADLSSANGVYVNNLKLDRHVLAHGDVFQIG 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 7.26e-36 / Id = 48.04 Expect = 7.41e-27 / Id = 57.27 Expect = 2.35e-9 / Id = 44.79 Expect = 1.12e-8 / Id = 35.77 Expect = 1.69e-8 / Id = 41.84 Expect = 7.66e-8 / Id = 40.63 Expect = 1.34e-7 / Id = 40.45 Expect = 3.06e-7 / Id = 38.02 Expect = 3.70e-7 / Id = 43.75 Expect = 4.89e-7 / Id = 38.24 Sequence D7G7R3_ECTSI A0A6H5KYS2_9PHAE A0A5S4ZWP6_9FIRM A0A7V9ELN6_9ACTN A0A538CVJ5_9ACTN R4KHZ9_9FIRM A0A2E4X269_9DELT Q017F0_OSTTA A0A2E6VV18_9DELT A0A1G1HWE9_9BACT Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100411.43.1
>prot_H-elongata_contig100411.43.1 ID=prot_H-elongata_contig100411.43.1|Name=mRNA_H-elongata_contig100411.43.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MDTHAKLELVGGADPNTVIPEVISLSNEKMTIGRNTKVVDVVIDLTPTNT back to top mRNA from alignment at H-elongata_contig100411:208..2284-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100411.43.1 ID=mRNA_H-elongata_contig100411.43.1|Name=mRNA_H-elongata_contig100411.43.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2077bp|location=Sequence derived from alignment at H-elongata_contig100411:208..2284- (Himanthalia elongata Himel1 dioecious)ACTTAGTATATTTTATATTTTCAGTACAGTACTCCTACAGAACACCGACA
CTGTCTGTAACCCGCCTTCCTTCTATAACATACAGTTATAAAACGTTAAT
GCTTTTTGGAAAGCATCCTGCTAAAGATGTTTGACGTCGCAACGTGCACA
GCGACGCCTGTGCAGACTCTGTAAC ATGGACACACACG GTGAGAGACATG
CTGTGTTTTCATTCTCATGAGTTAAGCTACCTAGGTTATTCTTGGTCGGG
ATGAGATGAGGGGCAGTAACACCTCTAGACGGAGGCTCTCCTCACAGCCA
CCGCAGAAAAACATCAAAATCGTACTTCGAAATTATTTGATTGCTCCGTG
AAGTCAACCAAGTCAACCACGCGCTTGAGACTGGCTGCTATTAAGAGCGA
CTCCATAGCTACCGACAGAGAGCACGCTCGCCGAAGAGGCTTAACTAGGA
CAATGGCGCAAATGTTGTAACCGTTGGAACCCTCCTCCAACTTCATCCAC
CGCCGGTATTTTGCATGCTCTGATCAGCTAAACTTGAGCTTGTCGGCGGA
GCTGACCCCAACACCGTGATACCAGAGGTCATCAGTCTATCCAA GTAAGA
CCAGCCTTGTGTCGAAGGACAGCGTCCCTGTTCCTCCCCCACTTTTCATT
ACCCAGGTTAGATCTATCTTTGCGAATAATCTCATCCCGGTACTCTTGAG
TTGCAACTGACAGGTAGGAAACTGGCGTACAGGTATCATTGGTGGCGGTT
CTCATTGGCGAAGGTGCCAGACGCAACGCGCATTCCGCCCTCTTGACAGA
GGGCCCCTCAAATGCGACGTAAGATGGCTGGGAATGTGTTTACCTTGATG
GAGACGTGTGTACGATCATGCTCTCAGATGGACGATTTCTGTACCTTAAT
GCAGCTAAAACACTGTTGTAGACCAGATCGCAATTCAACCCTTACAAAAA
AGAGGAGACCTTGCTACCAGTAGAGGTCCCAGGTAGAGACGACACAAAAA
CTTGAAACGGTCTGATGCCAACAGACTCAAAACATGAGCTACCGGTACGA
AAGGTGAAATGTTGCACGCGAATATTTTCATCTTCAACCACTCCTCCCAT
CCGACCTCTCAACGGCCCTCTTCCCACGTGAGACTGAATTGTTTCCTTGT
TGATCTACCCCTGTTTCACTATTCAATATACAACATACAATATGCGTGGT
TCTGTCAGCGAGAAGATGACAATCGGTCGAAACACAAAGGTGGTGGACGT
CGTGATCGACCTGACGCCAACCAACACCATCTCTAGGAGGCACGCGCAGA
TCTCCCGTACGCGATGCGTCAAGGAAGGCGACACTTTCGTCATTAGAGAT
CTG GTGCGCACTTGTTGGAATGTAACTTGACCCCGAAGACGGTCAGTGGA
GTGCCAGCAGTCCCTCGTGCGCGGTAGGTTGTAGTCAACGTGCGCAACGC
AAATTTTCTTCGCTGCATATTTTCATTGCGTTCAGGCATCAACGAACGGG
GTGTTTGTCAACGGCTTCAAGATATCGGAGCAGACTCTGCAGCACGGCGA
TGTGGTGCAGTTTGGAGGCGCGGCAGACATCCCTGTTGGCACTCGCTTCG
GCGGCACTGGTAGCCATATCAG GTGCGCTTCCTCGTCGGGAATAAGTAGA
TCTACCTATACTAAACACCATCACTAGTCATTTTATATGAATTTACTGCG
GAAAGTCCGTAGATGAGGGTAATTTGCGGCTAGAGGGTGAACTCCCGGTG
TCCTTAATCTCATTGGGCACGAAGGTCCAACAATCACCCACATTCGTCTG
AGGGTTGCTCAAAATGTCGTCTTCATCTGCCCACGGACTATCGTTCTGCG
CCACTCGCGCGCGGGCGCCGTATTTTGCCAGGTACCGCTTCATCTACGAG
CACAATTCCCGTAAACGACGGCAGCCGACGGAAACTGGCACGGATTCCCC
CTCACCCCGACAACGACCAAAGACCGACGCGGAAAGCAGCTCCCCGCCCA
TGAGCGGCGGAACATCCGGTTGGTTGGCCCTCTCACCCATCAAACGGGGC
GCGAAGCTGCAGCGTGCGGACACGGCA back to top Coding sequence (CDS) from alignment at H-elongata_contig100411:208..2284-
>mRNA_H-elongata_contig100411.43.1 ID=mRNA_H-elongata_contig100411.43.1|Name=mRNA_H-elongata_contig100411.43.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig100411:208..2284- (Himanthalia elongata Himel1 dioecious) back to top