mRNA_H-elongata_contig100411.43.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match: D7G7R3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7R3_ECTSI) HSP 1 Score: 141 bits (356), Expect = 7.260e-36 Identity = 86/179 (48.04%), Postives = 108/179 (60.34%), Query Frame = 2 Query: 188 AKLELVGGADPNTVIPEVISLSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFGGAADIPVGTRFGGTGSHIRYRFIYE------HNSRKRR--QPTETGTXXXXXXXXPKTDAESSSPPMSGGTSGWLALSPIK 700 AKL LV + V PE+I LS E +GR++K DV +D PT TISR+HA+I + + T+ +RDL STNGVFVN FK+ EQ L+HGDVVQFGGAADIPVGTRFGGTGS IRYRF ++ NS++RR P T DA + +S G+S + P K Sbjct: 6 AKLVLVASTEDYNV-PEIIQLSRESTVLGRSSKTCDVTLDAAPTKTISRKHAEIFCGKGKRGPKTYTLRDLGSTNGVFVNEFKVQEQRLRHGDVVQFGGAADIPVGTRFGGTGSRIRYRFEHKLAGSPNTNSKRRRGSNPDAPATNRPKIVRADTLDAADTLRAISNGSSVTRGIGPDK 183
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match: A0A6H5KYS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS2_9PHAE) HSP 1 Score: 117 bits (293), Expect = 7.410e-27 Identity = 63/110 (57.27%), Postives = 77/110 (70.00%), Query Frame = 2 Query: 257 EKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFGGAADIPVGTRFGGTGSHIRYRFIYEH-NSRKRRQP 583 E +GR+++ DV +D PT TISR+HA+I + T+ +RDL STNGVFVN FK+ EQ L+HGDVVQFGGAADIPVGTRFGGTGS IR NS++RR P Sbjct: 43 ESTVLGRSSRTCDVTLDAAPTKTISRKHAEIFCGNGRRGPKTYTLRDLGSTNGVFVNEFKVQEQRLRHGDVVQFGGAADIPVGTRFGGTGSRIRCSARSPTPNSKRRRGP 152
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match: A0A5S4ZWP6_9FIRM (Type III secretion system (T3SS) inner membrane Yop/YscD-like protein n=1 Tax=Desulfallas thermosapovorans DSM 6562 TaxID=1121431 RepID=A0A5S4ZWP6_9FIRM) HSP 1 Score: 66.2 bits (160), Expect = 2.350e-9 Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 2 Query: 194 LELVGGADPNTVIPEVISLSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFG 481 LE+V GA + + L ++TIGR ++ D+ + P N+ISRRHA I+RT G FVIRD +STNG +VNG K+++ L HGDVV+ G Sbjct: 155 LEVVEGA----LAGKKFVLEGNQVTIGRG-EICDICL---PDNSISRRHAVINRT-----GRHFVIRDRSSTNGTYVNGVKVAQIELSHGDVVKMG 237
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match: A0A7V9ELN6_9ACTN (DUF3662 and FHA domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9ELN6_9ACTN) HSP 1 Score: 64.7 bits (156), Expect = 1.120e-8 Identity = 49/137 (35.77%), Postives = 76/137 (55.47%), Query Frame = 2 Query: 125 RCLTSQRAQRRLCRLCNMDTHAKLELVGGADPNTVIP-EVISLSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFGGAA----DIPVGTRFGG 520 R ++S A+R L + AKL ++G + + P E IS++ + IGR + V V+ D + +SRRHA+++R +G +V++DL STNG FVNG + +EQTL GD + FG + +P G GG Sbjct: 145 RAISSNTAER----LGIASSGAKLVVLGDDEGDGAAPKESISITRTPIIIGRLSNVDVVLAD----SNVSRRHAELAR-----DGSRWVLKDLGSTNGTFVNGARATEQTLTSGDRLTFGSSELVFETVPEGRDSGG 268
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match: A0A538CVJ5_9ACTN (FHA domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CVJ5_9ACTN) HSP 1 Score: 61.2 bits (147), Expect = 1.690e-8 Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 2 Query: 209 GADPNTVIP--EVISLSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFGGAADI 496 GA V+P + + L +TIGR + + I L TN +SR+HA++ +G FV+ DL STNG FVNG +I++ L GDV+ FGGAA I Sbjct: 25 GAVGTLVLPTGQRVILGEFVLTIGR---LPECTITLADTN-VSRKHAEVR-----PDGAGFVLSDLGSTNGTFVNGVRITQHELADGDVITFGGAAKI 113
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match: R4KHZ9_9FIRM (FHA domain-containing protein n=1 Tax=Desulfoscipio gibsoniae DSM 7213 TaxID=767817 RepID=R4KHZ9_9FIRM) HSP 1 Score: 62.0 bits (149), Expect = 7.660e-8 Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 2 Query: 194 LELVGGADPNTVIPEVISLSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFG 481 LE+V GA + + +L + + IGR ++ D+ + P N+ISRRHA +SRT G FVI+D +STNG +VNG K++E+ L GD+++ G Sbjct: 158 LEVVEGA----LAGKRFTLDSSQAVIGRG-EICDICL---PDNSISRRHAALSRT-----GRHFVIKDRSSTNGTYVNGVKVTERELVDGDIIKMG 240
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match: A0A2E4X269_9DELT (FHA domain-containing protein n=2 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E4X269_9DELT) HSP 1 Score: 58.9 bits (141), Expect = 1.340e-7 Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 2 Query: 215 DPNTVIPEVISLSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFG 481 DP+ + I + +E+ +GR + VD++I P + +SR HAQI V++ FV+ DL STNG FVNG +I L GD +QFG Sbjct: 29 DPDGTMGPPIEMIDERFLLGRGSD-VDMMI---PDSQVSRHHAQI-----VRQKSEFVVEDLGSTNGTFVNGVRIKRCRLTPGDQLQFG 108
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match: Q017F0_OSTTA (E3 ubiquitin-protein ligase CHFR n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q017F0_OSTTA) HSP 1 Score: 61.2 bits (147), Expect = 3.060e-7 Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 2 Query: 206 GGADPNTVIPEVISLSNEKM--TIGRNTKVVDVVIDLTPTNTI-SRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKI---SEQTLQHGDVVQFGGAADIPVGTRFGGTGSHIRYRFI 550 G D +P + S+ ++ TIGR+ VDV +D T + SRRHA ++ C +GD +RDLA+TNG FVNG +I S+ L+ GDVV FGG V G + R+R++ Sbjct: 40 GKDDDTREVPGLPRASDSRVVITIGRDATKVDVAMDCTTIPLLLSRRHAHLT---C--DGDAHYVRDLATTNGTFVNGSRIEAKSDVALRDGDVVAFGGPRY--VARNAGKLANPFRFRYV 153
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match: A0A2E6VV18_9DELT (GGDEF domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E6VV18_9DELT) HSP 1 Score: 60.5 bits (145), Expect = 3.700e-7 Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 2 Query: 242 ISLSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFG 481 + + E++T+GR+ DV++D +SRRHA+I +KEGDT+ + DL STNGVFVNG K+ L GD +Q G Sbjct: 32 LKIEKEELTLGRSMD-ADVLLD---NEGVSRRHARI-----LKEGDTYWLEDLGSTNGVFVNGEKLDRTKLFDGDRIQIG 102
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Match: A0A1G1HWE9_9BACT (FHA domain-containing protein n=1 Tax=Nitrospirae bacterium RIFCSPHIGHO2_01_FULL_66_17 TaxID=1801712 RepID=A0A1G1HWE9_9BACT) HSP 1 Score: 57.4 bits (137), Expect = 4.890e-7 Identity = 39/102 (38.24%), Postives = 53/102 (51.96%), Query Frame = 2 Query: 203 VGGADPNTVIPEVIS---------LSNEKMTIGRNTKVVDVVIDLTPTNTISRRHAQISRTRCVKEGDTFVIRDLASTNGVFVNGFKISEQTLQHGDVVQFG 481 + GADP V+S L+NE IGR+ + D+VID +SRRHA+I R +++ DL+S NGV+VN K+ L HGDV Q G Sbjct: 15 LSGADPRVPALNVLSGPLEGREYRLTNELYVIGRDPE-SDIVIDQ---REVSRRHAKIMRM-----ASEYLLADLSSANGVYVNNLKLDRHVLAHGDVFQIG 107 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100411.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100411.43.1 >prot_H-elongata_contig100411.43.1 ID=prot_H-elongata_contig100411.43.1|Name=mRNA_H-elongata_contig100411.43.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp MDTHAKLELVGGADPNTVIPEVISLSNEKMTIGRNTKVVDVVIDLTPTNTback to top mRNA from alignment at H-elongata_contig100411:208..2284- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100411.43.1 ID=mRNA_H-elongata_contig100411.43.1|Name=mRNA_H-elongata_contig100411.43.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2077bp|location=Sequence derived from alignment at H-elongata_contig100411:208..2284- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100411:208..2284- >mRNA_H-elongata_contig100411.43.1 ID=mRNA_H-elongata_contig100411.43.1|Name=mRNA_H-elongata_contig100411.43.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig100411:208..2284- (Himanthalia elongata Himel1 dioecious)back to top |