mRNA_H-elongata_contig1004.42.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1004.42.1
Unique NamemRNA_H-elongata_contig1004.42.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1004.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1004contigH-elongata_contig1004:5600..5992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.5411177-CDS-H-elongata_contig1004:5599..59921622929546.5411177-CDS-H-elongata_contig1004:5599..5992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1004 5600..5992 +
1691679063.4437685-CDS-H-elongata_contig1004:5599..59921691679063.4437685-CDS-H-elongata_contig1004:5599..5992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1004 5600..5992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1004.42.1prot_H-elongata_contig1004.42.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1004 5600..5992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1004.42.1

>prot_H-elongata_contig1004.42.1 ID=prot_H-elongata_contig1004.42.1|Name=mRNA_H-elongata_contig1004.42.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
ASDNIFDLASRMHNTLRLFDLKQPSLRHVRTLAAQPYPAFPPTIVQDILS
LCDVAIWTFDHPAARPWFFRNLPGKAHWSSRYFSTDNSSGGSSTSKHRQR
RREEPSSRRGKTKRVMTALTMDINTDSDFPA
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mRNA from alignment at H-elongata_contig1004:5600..5992+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1004.42.1 ID=mRNA_H-elongata_contig1004.42.1|Name=mRNA_H-elongata_contig1004.42.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig1004:5600..5992+ (Himanthalia elongata Himel1 dioecious)
GCCAGCGACAATATATTTGACCTCGCTTCCAGGATGCACAACACCCTCCG
CCTCTTTGACCTCAAACAACCTTCTCTCCGCCACGTCCGGACCCTCGCCG
CCCAGCCGTACCCTGCTTTTCCCCCGACAATTGTCCAGGACATCCTCTCT
TTGTGCGACGTGGCCATCTGGACATTCGACCACCCAGCGGCACGCCCTTG
GTTCTTCAGGAACCTTCCTGGCAAGGCTCACTGGTCATCTCGGTACTTCT
CGACGGACAATTCTTCCGGCGGCTCCTCCACGAGTAAGCACCGACAGCGC
AGGCGGGAGGAGCCCTCTTCGAGACGCGGAAAGACCAAGAGGGTCATGAC
AGCCCTAACTATGGACATTAACACGGACTCTGACTTCCCAGCC
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Coding sequence (CDS) from alignment at H-elongata_contig1004:5600..5992+

>mRNA_H-elongata_contig1004.42.1 ID=mRNA_H-elongata_contig1004.42.1|Name=mRNA_H-elongata_contig1004.42.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig1004:5600..5992+ (Himanthalia elongata Himel1 dioecious)
GCCAGCGACAATATATTTGACCTCGCTTCCAGGATGCACAACACCCTCCG
CCTCTTTGACCTCAAACAACCTTCTCTCCGCCACGTCCGGACCCTCGCCG
CCCAGCCGTACCCTGCTTTTCCCCCGACAATTGTCCAGGACATCCTCTCT
TTGTGCGACGTGGCCATCTGGACATTCGACCACCCAGCGGCACGCCCTTG
GTTCTTCAGGAACCTTCCTGGCAAGGCTCACTGGTCATCTCGGTACTTCT
CGACGGACAATTCTTCCGGCGGCTCCTCCACGAGTAAGCACCGACAGCGC
AGGCGGGAGGAGCCCTCTTCGAGACGCGGAAAGACCAAGAGGGTCATGAC
AGCCCTAACTATGGACATTAACACGGACTCTGACTTCCCAGCCGCCAGCG
ACAATATATTTGACCTCGCTTCCAGGATGCACAACACCCTCCGCCTCTTT
GACCTCAAACAACCTTCTCTCCGCCACGTCCGGACCCTCGCCGCCCAGCC
GTACCCTGCTTTTCCCCCGACAATTGTCCAGGACATCCTCTCTTTGTGCG
ACGTGGCCATCTGGACATTCGACCACCCAGCGGCACGCCCTTGGTTCTTC
AGGAACCTTCCTGGCAAGGCTCACTGGTCATCTCGGTACTTCTCGACGGA
CAATTCTTCCGGCGGCTCCTCCACGAGTAAGCACCGACAGCGCAGGCGGG
AGGAGCCCTCTTCGAGACGCGGAAAGACCAAGAGGGTCATGACAGCCCTA
ACTATGGACATTAACACGGACTCTGACTTCCCAGCC
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