mRNA_H-elongata_contig10037.38.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10037.38.1
Unique NamemRNA_H-elongata_contig10037.38.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: D8LF24_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF24_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 4.420e-60
Identity = 98/105 (93.33%), Postives = 102/105 (97.14%), Query Frame = 1
Query:   43 TGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAAGGGAL 357
            TGTSILKG DDYM+LLDEHITMTQAMTFSTFKGPFEERIE WNNTLQVVSE+IDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRF+SVDKHWRATM +AGGGAL
Sbjct: 1117 TGTSILKGVDDYMSLLDEHITMTQAMTFSTFKGPFEERIENWNNTLQVVSELIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFSSVDKHWRATMASAGGGAL 1221          
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: F0YHW5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHW5_AURAN)

HSP 1 Score: 186 bits (473), Expect = 2.110e-52
Identity = 84/107 (78.50%), Postives = 95/107 (88.79%), Query Frame = 1
Query:   31 PFFNTGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAAGGG 351
            P+  TGTSIL+G D+YM LLDEHIT TQAMTFS FKGPFEERIE+WN TLQ+VSE+IDEW+AVQ+NWLYLQPIFDS DINKQLP EGKRFA+VDKHWR T+N+A  G
Sbjct: 1088 PYKETGTSILRGIDEYMALLDEHITTTQAMTFSAFKGPFEERIEKWNTTLQIVSELIDEWVAVQKNWLYLQPIFDSPDINKQLPVEGKRFATVDKHWRQTLNSAASG 1194          
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: A0A8J2SZZ7_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZZ7_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.040e-49
Identity = 79/109 (72.48%), Postives = 93/109 (85.32%), Query Frame = 1
Query:   31 PFFNTGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAAGGGAL 357
            P+  TGTS+L+G D+YM LLDEHIT TQAM+FS FKGPFEERI+ WN TL  VSE++DEW+AVQ+NWLYLQPIFDS DINKQLPAEGKRFA+VDKHWR T+ +A  G +
Sbjct: 1065 PYKETGTSVLRGIDEYMALLDEHITTTQAMSFSAFKGPFEERIDAWNETLNTVSEMLDEWIAVQKNWLYLQPIFDSPDINKQLPAEGKRFATVDKHWRQTLGSASSGQM 1173          
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: A0A835YSP2_9STRA (Dynein heavy chain and region D6 of dynein motor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP2_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.930e-49
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 1
Query:   31 PFFNTGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAAGGGA 354
            P+ NTGT IL GAD+ M LLDE +T TQAM FS F+GPFE+RI +W+ TLQVVSEV++EWLAVQR+WLYLQPIFDS DINKQLP EGKRFASVDKHWRATM+AA GGA
Sbjct:  293 PYRNTGTCILHGADEMMALLDEQVTATQAMAFSAFRGPFEDRIAQWDATLQVVSEVLEEWLAVQRSWLYLQPIFDSPDINKQLPLEGKRFASVDKHWRATMSAAAGGA 400          
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: A0A2R5GDZ9_9STRA (Dynein heavy chain 1, axonemal n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDZ9_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.790e-46
Identity = 75/104 (72.12%), Postives = 89/104 (85.58%), Query Frame = 1
Query:   31 PFFNTGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAA 342
            P+  TGT +L+G D+   LLDEH+TMTQAM FS FKGPFEERIE+WN+TL VVS+V+DEW+ VQRNWLYLQPIFDS DINKQLP EGKRFA+VDK+WR T+ +A
Sbjct: 1254 PYKETGTYVLRGFDELQALLDEHVTMTQAMMFSAFKGPFEERIEKWNHTLSVVSDVLDEWVGVQRNWLYLQPIFDSPDINKQLPTEGKRFATVDKNWRQTLGSA 1357          
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: A0A3F2RNL0_9STRA (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RNL0_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.570e-45
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query:   43 TGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAA 342
            TGTS++KG D+   +LDEH+TMTQAM FS+FKGPFEE I  WN TLQ++SEV++EWLAVQRNWLYLQPIF+S DINKQLPAEGKRFASVDK+WR T+ +A
Sbjct:  932 TGTSVIKGVDEIQAVLDEHVTMTQAMMFSSFKGPFEEEIVEWNTTLQLISEVLEEWLAVQRNWLYLQPIFESPDINKQLPAEGKRFASVDKNWRQTLASA 1031          
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: D0MZ61_PHYIT (Sporangia induced dynein heavy chain n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZ61_PHYIT)

HSP 1 Score: 166 bits (421), Expect = 2.140e-45
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query:   43 TGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAA 342
            TGT ++KG D+   +LDEH+TMTQAM FSTFKGPFEE I  WN+TLQ++SEV++EWLAVQRNWLYLQPIF+S DINKQLPAEGKRFASVDK+WR T+ +A
Sbjct: 1096 TGTYVIKGVDEIQAILDEHVTMTQAMMFSTFKGPFEEEIIEWNSTLQLISEVLEEWLAVQRNWLYLQPIFESPDINKQLPAEGKRFASVDKNWRQTLASA 1195          
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: V9F149_PHYPR (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=V9F149_PHYPR)

HSP 1 Score: 166 bits (421), Expect = 2.140e-45
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query:   43 TGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAA 342
            TGT ++KG D+   +LDEH+TMTQAM FSTFKGPFEE I  WN+TLQ++SEV++EWLAVQRNWLYLQPIF+S DINKQLPAEGKRFASVDK+WR T+ +A
Sbjct: 1121 TGTYVIKGVDEIQAILDEHVTMTQAMMFSTFKGPFEEEIIEWNSTLQLISEVLEEWLAVQRNWLYLQPIFESPDINKQLPAEGKRFASVDKNWRQTLASA 1220          
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: A0A0W8B000_PHYNI (Dynein heavy chain 7 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8B000_PHYNI)

HSP 1 Score: 166 bits (421), Expect = 2.140e-45
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query:   43 TGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAA 342
            TGT ++KG D+   +LDEH+TMTQAM FSTFKGPFEE I  WN+TLQ++SEV++EWLAVQRNWLYLQPIF+S DINKQLPAEGKRFASVDK+WR T+ +A
Sbjct: 2200 TGTYVIKGVDEIQAILDEHVTMTQAMMFSTFKGPFEEEIIEWNSTLQLISEVLEEWLAVQRNWLYLQPIFESPDINKQLPAEGKRFASVDKNWRQTLASA 2299          
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: A0A6G0NY88_9STRA (Dynein heavy chain 1, axonemal n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NY88_9STRA)

HSP 1 Score: 165 bits (418), Expect = 5.340e-45
Identity = 73/100 (73.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query:   43 TGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAA 342
            TGT ++KG D+   +LDEH+TMTQAM FS+FKGPFEE I  WN+TLQ++SEV++EWLAVQRNWLYLQPIF+S DINKQLPAEGKRFASVDK+WR T+ +A
Sbjct: 1115 TGTYVIKGVDEIQAILDEHVTMTQAMMFSSFKGPFEEEIVEWNSTLQLISEVLEEWLAVQRNWLYLQPIFESPDINKQLPAEGKRFASVDKNWRQTLASA 1214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF24_ECTSI4.420e-6093.33Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
F0YHW5_AURAN2.110e-5278.50Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SZZ7_9STRA1.040e-4972.48Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A835YSP2_9STRA1.930e-4976.85Dynein heavy chain and region D6 of dynein motor-d... [more]
A0A2R5GDZ9_9STRA1.790e-4672.12Dynein heavy chain 1, axonemal n=1 Tax=Hondaea fer... [more]
A0A3F2RNL0_9STRA1.570e-4574.00Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
D0MZ61_PHYIT2.140e-4574.00Sporangia induced dynein heavy chain n=2 Tax=Phyto... [more]
V9F149_PHYPR2.140e-4574.00Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A0W8B000_PHYNI2.140e-4574.00Dynein heavy chain 7 n=1 Tax=Phytophthora nicotian... [more]
A0A6G0NY88_9STRA5.340e-4573.00Dynein heavy chain 1, axonemal n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10037contigH-elongata_contig10037:6864..7579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue1.9e-51
Seed eggNOG ortholog2880.D8LF24
KEGG koko:K10408
KEGG Pathwayko05016,map05016
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size360
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929545.9327621-CDS-H-elongata_contig10037:6863..70401622929545.9327621-CDS-H-elongata_contig10037:6863..7040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10037 6864..7040 -
1691679063.1983502-CDS-H-elongata_contig10037:6863..70401691679063.1983502-CDS-H-elongata_contig10037:6863..7040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10037 6864..7040 -
1622929545.948547-CDS-H-elongata_contig10037:7396..75791622929545.948547-CDS-H-elongata_contig10037:7396..7579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10037 7397..7579 -
1691679063.2156882-CDS-H-elongata_contig10037:7396..75791691679063.2156882-CDS-H-elongata_contig10037:7396..7579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10037 7397..7579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10037.38.1prot_H-elongata_contig10037.38.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10037 6864..7579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10037.38.1

>prot_H-elongata_contig10037.38.1 ID=prot_H-elongata_contig10037.38.1|Name=mRNA_H-elongata_contig10037.38.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MPAIKRGACRPFFNTGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFE
ERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRF
ASVDKHWRATMNAAGGGAL*
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mRNA from alignment at H-elongata_contig10037:6864..7579-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10037.38.1 ID=mRNA_H-elongata_contig10037.38.1|Name=mRNA_H-elongata_contig10037.38.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=716bp|location=Sequence derived from alignment at H-elongata_contig10037:6864..7579- (Himanthalia elongata Himel1 dioecious)
ATGCCTGCCATAAAACGAGGTGCATGTCGCCCGTTTTTTAATACAGGAAC AAGCATCCTCAAGGGTGCTGATGACTATATGAACCTCTTAGACGAACATA TCACGATGACCCAAGCCATGACGTTCAGTACCTTTAAGGGACCCTTCGAA GAGCGCATTGAGAGATGGAACAATACCCTCCAGGTGTAAGCTCCCGTCGT ATATGGAGCACCCGTAAATGTTTGGCACAGCTCCCAGGGTTCGAACCCTT GATATACCTAAGCATTCATCGCTTATTGATATAATTTGCAAATTGCAATG AAAAACGTTACTTCAAAACATTGTTAAATGTGGTTGGATTTAGATGTTAT CGCTTATGTTGTCACGCCATGGCACAATAAGAAAAAACACAATACCTGGT ATATATTTCCTTGAAATTGTAGATAACCTCTAAGACTATGCTCATGTGCG ATCGGATATTTCCTGTGCAAGCAGGGTAAAGCACGCCCTTGTAACTCGAG CTCGCTGCCGACAAGAACATCCCCGATGTCGTCTCGCAGGTCGTGAGCGA GGTAATCGATGAATGGCTTGCAGTACAACGTAACTGGCTCTATTTGCAGC CCATATTTGATTCAGAAGACATAAACAAACAGCTTCCCGCAGAGGGTAAG CGGTTTGCCAGCGTGGATAAACACTGGAGAGCTACCATGAATGCCGCAGG CGGGGGAGCCTTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig10037:6864..7579-

>mRNA_H-elongata_contig10037.38.1 ID=mRNA_H-elongata_contig10037.38.1|Name=mRNA_H-elongata_contig10037.38.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig10037:6864..7579- (Himanthalia elongata Himel1 dioecious)
ATGCCTGCCATAAAACGAGGTGCATGTCGCCCGTTTTTTAATACAGGAAC
AAGCATCCTCAAGGGTGCTGATGACTATATGAACCTCTTAGACGAACATA
TCACGATGACCCAAGCCATGACGTTCAGTACCTTTAAGGGACCCTTCGAA
GAGCGCATTGAGAGATGGAACAATACCCTCCAGATGCCTGCCATAAAACG
AGGTGCATGTCGCCCGTTTTTTAATACAGGAACAAGCATCCTCAAGGGTG
CTGATGACTATATGAACCTCTTAGACGAACATATCACGATGACCCAAGCC
ATGACGTTCAGTACCTTTAAGGGACCCTTCGAAGAGCGCATTGAGAGATG
GAACAATACCCTCCAGGTCGTGAGCGAGGTAATCGATGAATGGCTTGCAG
TACAACGTAACTGGCTCTATTTGCAGCCCATATTTGATTCAGAAGACATA
AACAAACAGCTTCCCGCAGAGGGTAAGCGGTTTGCCAGCGTGGATAAACA
CTGGAGAGCTACCATGAATGCCGCAGGCGGGGGAGCCTTGTAAGTCGTGA
GCGAGGTAATCGATGAATGGCTTGCAGTACAACGTAACTGGCTCTATTTG
CAGCCCATATTTGATTCAGAAGACATAAACAAACAGCTTCCCGCAGAGGG
TAAGCGGTTTGCCAGCGTGGATAAACACTGGAGAGCTACCATGAATGCCG
CAGGCGGGGGAGCCTTGTAA
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