mRNA_H-elongata_contig10037.38.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: D8LF24_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF24_ECTSI) HSP 1 Score: 208 bits (530), Expect = 4.420e-60 Identity = 98/105 (93.33%), Postives = 102/105 (97.14%), Query Frame = 1 Query: 43 TGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAAGGGAL 357
TGTSILKG DDYM+LLDEHITMTQAMTFSTFKGPFEERIE WNNTLQVVSE+IDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRF+SVDKHWRATM +AGGGAL
Sbjct: 1117 TGTSILKGVDDYMSLLDEHITMTQAMTFSTFKGPFEERIENWNNTLQVVSELIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFSSVDKHWRATMASAGGGAL 1221
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: F0YHW5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHW5_AURAN) HSP 1 Score: 186 bits (473), Expect = 2.110e-52 Identity = 84/107 (78.50%), Postives = 95/107 (88.79%), Query Frame = 1 Query: 31 PFFNTGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAAGGG 351
P+ TGTSIL+G D+YM LLDEHIT TQAMTFS FKGPFEERIE+WN TLQ+VSE+IDEW+AVQ+NWLYLQPIFDS DINKQLP EGKRFA+VDKHWR T+N+A G
Sbjct: 1088 PYKETGTSILRGIDEYMALLDEHITTTQAMTFSAFKGPFEERIEKWNTTLQIVSELIDEWVAVQKNWLYLQPIFDSPDINKQLPVEGKRFATVDKHWRQTLNSAASG 1194
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: A0A8J2SZZ7_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZZ7_9STRA) HSP 1 Score: 179 bits (453), Expect = 1.040e-49 Identity = 79/109 (72.48%), Postives = 93/109 (85.32%), Query Frame = 1 Query: 31 PFFNTGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAAGGGAL 357
P+ TGTS+L+G D+YM LLDEHIT TQAM+FS FKGPFEERI+ WN TL VSE++DEW+AVQ+NWLYLQPIFDS DINKQLPAEGKRFA+VDKHWR T+ +A G +
Sbjct: 1065 PYKETGTSVLRGIDEYMALLDEHITTTQAMSFSAFKGPFEERIDAWNETLNTVSEMLDEWIAVQKNWLYLQPIFDSPDINKQLPAEGKRFATVDKHWRQTLGSASSGQM 1173
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: A0A835YSP2_9STRA (Dynein heavy chain and region D6 of dynein motor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP2_9STRA) HSP 1 Score: 178 bits (451), Expect = 1.930e-49 Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 1 Query: 31 PFFNTGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAAGGGA 354
P+ NTGT IL GAD+ M LLDE +T TQAM FS F+GPFE+RI +W+ TLQVVSEV++EWLAVQR+WLYLQPIFDS DINKQLP EGKRFASVDKHWRATM+AA GGA
Sbjct: 293 PYRNTGTCILHGADEMMALLDEQVTATQAMAFSAFRGPFEDRIAQWDATLQVVSEVLEEWLAVQRSWLYLQPIFDSPDINKQLPLEGKRFASVDKHWRATMSAAAGGA 400
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: A0A2R5GDZ9_9STRA (Dynein heavy chain 1, axonemal n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDZ9_9STRA) HSP 1 Score: 169 bits (429), Expect = 1.790e-46 Identity = 75/104 (72.12%), Postives = 89/104 (85.58%), Query Frame = 1 Query: 31 PFFNTGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAA 342
P+ TGT +L+G D+ LLDEH+TMTQAM FS FKGPFEERIE+WN+TL VVS+V+DEW+ VQRNWLYLQPIFDS DINKQLP EGKRFA+VDK+WR T+ +A
Sbjct: 1254 PYKETGTYVLRGFDELQALLDEHVTMTQAMMFSAFKGPFEERIEKWNHTLSVVSDVLDEWVGVQRNWLYLQPIFDSPDINKQLPTEGKRFATVDKNWRQTLGSA 1357
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: A0A3F2RNL0_9STRA (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RNL0_9STRA) HSP 1 Score: 167 bits (422), Expect = 1.570e-45 Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 1 Query: 43 TGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAA 342
TGTS++KG D+ +LDEH+TMTQAM FS+FKGPFEE I WN TLQ++SEV++EWLAVQRNWLYLQPIF+S DINKQLPAEGKRFASVDK+WR T+ +A
Sbjct: 932 TGTSVIKGVDEIQAVLDEHVTMTQAMMFSSFKGPFEEEIVEWNTTLQLISEVLEEWLAVQRNWLYLQPIFESPDINKQLPAEGKRFASVDKNWRQTLASA 1031
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: D0MZ61_PHYIT (Sporangia induced dynein heavy chain n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZ61_PHYIT) HSP 1 Score: 166 bits (421), Expect = 2.140e-45 Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 1 Query: 43 TGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAA 342
TGT ++KG D+ +LDEH+TMTQAM FSTFKGPFEE I WN+TLQ++SEV++EWLAVQRNWLYLQPIF+S DINKQLPAEGKRFASVDK+WR T+ +A
Sbjct: 1096 TGTYVIKGVDEIQAILDEHVTMTQAMMFSTFKGPFEEEIIEWNSTLQLISEVLEEWLAVQRNWLYLQPIFESPDINKQLPAEGKRFASVDKNWRQTLASA 1195
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: V9F149_PHYPR (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=V9F149_PHYPR) HSP 1 Score: 166 bits (421), Expect = 2.140e-45 Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 1 Query: 43 TGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAA 342
TGT ++KG D+ +LDEH+TMTQAM FSTFKGPFEE I WN+TLQ++SEV++EWLAVQRNWLYLQPIF+S DINKQLPAEGKRFASVDK+WR T+ +A
Sbjct: 1121 TGTYVIKGVDEIQAILDEHVTMTQAMMFSTFKGPFEEEIIEWNSTLQLISEVLEEWLAVQRNWLYLQPIFESPDINKQLPAEGKRFASVDKNWRQTLASA 1220
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: A0A0W8B000_PHYNI (Dynein heavy chain 7 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8B000_PHYNI) HSP 1 Score: 166 bits (421), Expect = 2.140e-45 Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 1 Query: 43 TGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAA 342
TGT ++KG D+ +LDEH+TMTQAM FSTFKGPFEE I WN+TLQ++SEV++EWLAVQRNWLYLQPIF+S DINKQLPAEGKRFASVDK+WR T+ +A
Sbjct: 2200 TGTYVIKGVDEIQAILDEHVTMTQAMMFSTFKGPFEEEIIEWNSTLQLISEVLEEWLAVQRNWLYLQPIFESPDINKQLPAEGKRFASVDKNWRQTLASA 2299
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Match: A0A6G0NY88_9STRA (Dynein heavy chain 1, axonemal n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NY88_9STRA) HSP 1 Score: 165 bits (418), Expect = 5.340e-45 Identity = 73/100 (73.00%), Postives = 88/100 (88.00%), Query Frame = 1 Query: 43 TGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEERIERWNNTLQVVSEVIDEWLAVQRNWLYLQPIFDSEDINKQLPAEGKRFASVDKHWRATMNAA 342
TGT ++KG D+ +LDEH+TMTQAM FS+FKGPFEE I WN+TLQ++SEV++EWLAVQRNWLYLQPIF+S DINKQLPAEGKRFASVDK+WR T+ +A
Sbjct: 1115 TGTYVIKGVDEIQAILDEHVTMTQAMMFSSFKGPFEEEIVEWNSTLQLISEVLEEWLAVQRNWLYLQPIFESPDINKQLPAEGKRFASVDKNWRQTLASA 1214 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10037.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10037.38.1 >prot_H-elongata_contig10037.38.1 ID=prot_H-elongata_contig10037.38.1|Name=mRNA_H-elongata_contig10037.38.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp MPAIKRGACRPFFNTGTSILKGADDYMNLLDEHITMTQAMTFSTFKGPFEback to top mRNA from alignment at H-elongata_contig10037:6864..7579- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10037.38.1 ID=mRNA_H-elongata_contig10037.38.1|Name=mRNA_H-elongata_contig10037.38.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=716bp|location=Sequence derived from alignment at H-elongata_contig10037:6864..7579- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10037:6864..7579- >mRNA_H-elongata_contig10037.38.1 ID=mRNA_H-elongata_contig10037.38.1|Name=mRNA_H-elongata_contig10037.38.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig10037:6864..7579- (Himanthalia elongata Himel1 dioecious)back to top |