mRNA_H-elongata_contig100311.35.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100311.35.1
Unique NamemRNA_H-elongata_contig100311.35.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: D7G4S4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S4_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.280e-37
Identity = 69/102 (67.65%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 MRYAVTLTLAAVVAAGSVVAFAPPSAPLRRVSVSSRAAATLDMAYIPDGLSPTEWKKIQAEEKKKLASLGKVGPQRFKSRSFQAWQESGQGHLFPVDPKKVR 306
            MR   T  +AA+    SVVAFAPPSAPLR V+  S ++A L M YIPDGLSP EWKKI+  +KKK  +LGK+GP RFKSRSFQAWQESG GHLFPVDPKKV+
Sbjct:    1 MRTVSTFAVAALAGTSSVVAFAPPSAPLRPVTTRSSSSAALKMVYIPDGLSPAEWKKIKDADKKKQENLGKLGPSRFKSRSFQAWQESGAGHLFPVDPKKVK 102          
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: D7FWZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWZ5_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.630e-23
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   94 SVSSRAAATLDMAYIPDGLSPTEWKKIQ---AEEKKKLASLGKVGPQRFKSRSFQAWQESGQGHLFPVDPKKVR 306
            S S +  A LDM Y+PDGLSP +WKK+Q   AE+KKK+  LG+VG + FKSRS QAWQE G GHLFPVDPKKV+
Sbjct:   54 SCSRQRRADLDMKYVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDPKKVK 127          
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A7S2US33_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US33_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.870e-19
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 1
Query:  106 RAAATLDMAYIPDGLSPTEWKKIQAEEKKKLASLGKVGPQRFKSRSFQAWQESGQGHLFPVDPKKVR 306
            R    L M Y+P+GL+P +WKKIQ ++K K  +LG++GP+RFKSRSF AWQ +G  HLFPVDPKKV+
Sbjct:   33 RTCTPLRMGYVPEGLTPEQWKKIQEKDKAK-GNLGEMGPKRFKSRSFAAWQAAGGKHLFPVDPKKVK 98          
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A836CGF0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.290e-17
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   70 PSAPLRRVSVSSRAAATLDMAYIPDGLSPTEWKKIQAEEKKKLA-SLGKVGPQRFKSRSFQAWQESGQ----GHLFPVDPKKVR 306
            PSA L   +++  A ++L MAYIPDGL+P +WK I+ +E++K + +LG+VG   FKSRSFQAWQE+ +    GHLFPVDP KV+
Sbjct:   22 PSAALP-AALARPATSSLSMAYIPDGLTPEQWKVIKEKEQEKASKNLGRVGATSFKSRSFQAWQEAMERGEGGHLFPVDPVKVK 104          
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A6S9GSP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GSP2_HETAK)

HSP 1 Score: 80.9 bits (198), Expect = 1.510e-16
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   70 PSAPLRRVSVSSRAAATLDMAYIPDGLSPTEWKKIQAEEKKKLASLGKVGPQRFKSRSFQAWQESGQGHLFPVDPKKVR 306
            PSA  +R+SV    +      Y+PDGLS  ++ KI+ EE +KL +LGKVGP RFKSRSF  W  +G  HLFPVDP+KV+
Sbjct:   23 PSA--QRLSVVRNESNVQMKGYVPDGLSAEQYAKIKKEEAEKLKNLGKVGPNRFKSRSFADWHAAGGKHLFPVDPRKVK 99          
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A7R9UCL3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCL3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.820e-15
Identity = 43/82 (52.44%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   58 AFAPPSAPLRRVSVSSRAAA-TLDMAYIPDGLSPTEWKKIQAEEKKKLA--SLGKVGPQRFKSRSFQAWQESGQGHLFPVDP 294
            AFAPP      +  SSR     L M Y+PDG+SP +WKK+QA+EK K    +LG  G  +F+SRS QAWQE+G  HLFP DP
Sbjct:   48 AFAPPG-----MLTSSRGTRFQLSMGYVPDGMSPEQWKKMQAKEKSKSKGKNLGATGITKFQSRSLQAWQEAGAKHLFPTDP 124          
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A835ZE56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE56_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.950e-13
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  127 MAYIPDGLSPTEWKKIQAEEKKKLA-SLGKVGPQRFKSRSFQAWQ---ESGQG-HLFPVDPKKVR 306
            M YIPDGL+  +W  I+ +E+ K + +LG+VG   FKSRSFQAWQ   E+G+G HLFPVDP+KV+
Sbjct:   42 MRYIPDGLTQAQWDAIKEKEQAKASKNLGRVGATSFKSRSFQAWQQAMENGEGGHLFPVDPRKVK 106          
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A835YZ40_9STRA (BSD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ40_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.490e-11
Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   16 TLTLAAVVAAGSVVAFAPPSAPLRRVSVSSRAAATLDMAYIPDGLSPTEWKKIQAEEKKKLA-SLGKVGPQRFKSRSFQ------AWQESGQGHLFPVDPKKVR 306
            T+ LAA + A    AFAP +A     +V+    ++L MAYIPDGL+P +WK I+ +E+     +LG VG  RFKSRSF+      A      GHLFPVD  KV+
Sbjct:  633 TVVLAAALVASGADAFAPRAA--LPTAVARPTTSSLSMAYIPDGLTPEQWKAIKDKEQANAGKNLGVVGTTRFKSRSFEYTHSTPALLRVSGGHLFPVDLSKVK 734          
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A7S0XF66_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XF66_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.010e-11
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  118 TLDMAYIPDGLSPTEWKKIQAEEKKKLA--SLGKVGPQRFKSRSFQAWQESGQGHLFPVDPK 297
            +L M YIPDGLS  +W++I+            GKVG  +F+SRSF+AWQ+SGQ +LFPVDPK
Sbjct:   38 SLKMEYIPDGLSKKKWEEIKXXXXXXXXXXDFGKVGITKFQSRSFEAWQKSGQKNLFPVDPK 99          
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A8J2S8X9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S8X9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.340e-10
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1
Query:   52 VVAFAPPSAPLRRVSVSSRAAATLDMAYIPDGLSPTEWKKIQAEEKKKLASLGKVGPQRFKSRSFQAWQ---ESGQG-HLFPVDPKKVR 306
            +VA A  SA   + S  S   AT   AY+P G+SP EW+KI+A+EKK   +LG  G + FKSRSF ++    E G+  HLF V+P++VR
Sbjct:   58 IVALALSSAAAFQASTPSVRPATQLSAYVPSGMSPEEWEKIKAKEKKAKTNLGAGGARGFKSRSFDSFVAALEKGEADHLFAVNPEEVR 146          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G4S4_ECTSI1.280e-3767.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FWZ5_ECTSI1.630e-2364.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2US33_9STRA8.870e-1959.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CGF0_9STRA9.290e-1753.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9GSP2_HETAK1.510e-1653.16Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9UCL3_9STRA1.820e-1552.44Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835ZE56_9STRA5.950e-1356.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZ40_9STRA3.490e-1144.23BSD domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S0XF66_9STRA4.010e-1153.23Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A8J2S8X9_9STRA1.340e-1046.07Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100311contigH-elongata_contig100311:1156..1461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue2.7e-30
Seed eggNOG ortholog2880.D7G4S4
EggNOG OGs2D1KJ@1,2S4WB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_001160.1
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929545.7287614-CDS-H-elongata_contig100311:1155..14611622929545.7287614-CDS-H-elongata_contig100311:1155..1461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100311 1156..1461 -
1691679063.153534-CDS-H-elongata_contig100311:1155..14611691679063.153534-CDS-H-elongata_contig100311:1155..1461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100311 1156..1461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100311.35.1prot_H-elongata_contig100311.35.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100311 1156..1461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100311.35.1

>prot_H-elongata_contig100311.35.1 ID=prot_H-elongata_contig100311.35.1|Name=mRNA_H-elongata_contig100311.35.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MRYAVTLTLAAVVAAGSVVAFAPPSAPLRRVSVSSRAAATLDMAYIPDGL
SPTEWKKIQAEEKKKLASLGKVGPQRFKSRSFQAWQESGQGHLFPVDPKK
VR
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mRNA from alignment at H-elongata_contig100311:1156..1461-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100311.35.1 ID=mRNA_H-elongata_contig100311.35.1|Name=mRNA_H-elongata_contig100311.35.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig100311:1156..1461- (Himanthalia elongata Himel1 dioecious)
ATGAGATATGCTGTGACTTTGACTCTTGCAGCAGTAGTTGCTGCTGGTTC GGTCGTGGCTTTTGCGCCACCATCGGCCCCGCTGCGACGTGTGAGCGTCA GCAGCAGGGCTGCCGCCACCCTCGACATGGCGTACATCCCGGACGGCCTC TCGCCTACCGAGTGGAAGAAGATTCAGGCCGAAGAGAAGAAGAAGTTAGC TAGCCTCGGTAAGGTTGGACCACAAAGGTTCAAGAGCCGCAGCTTTCAGG CGTGGCAGGAGTCTGGTCAAGGTCATCTCTTCCCCGTTGATCCGAAGAAG GTACGT
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Coding sequence (CDS) from alignment at H-elongata_contig100311:1156..1461-

>mRNA_H-elongata_contig100311.35.1 ID=mRNA_H-elongata_contig100311.35.1|Name=mRNA_H-elongata_contig100311.35.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig100311:1156..1461- (Himanthalia elongata Himel1 dioecious)
ATGAGATATGCTGTGACTTTGACTCTTGCAGCAGTAGTTGCTGCTGGTTC
GGTCGTGGCTTTTGCGCCACCATCGGCCCCGCTGCGACGTGTGAGCGTCA
GCAGCAGGGCTGCCGCCACCCTCGACATGGCGTACATCCCGGACGGCCTC
TCGCCTACCGAGTGGAAGAAGATTCAGGCCGAAGAGAAGAAGAAGTTAGC
TAGCCTCGGTAAGGTTGGACCACAAAGGTTCAAGAGCCGCAGCTTTCAGG
CGTGGCAGGAGTCTGGTCAAGGTCATCTCTTCCCCGTTGATCCGAAGAAG
GTACGTATGAGATATGCTGTGACTTTGACTCTTGCAGCAGTAGTTGCTGC
TGGTTCGGTCGTGGCTTTTGCGCCACCATCGGCCCCGCTGCGACGTGTGA
GCGTCAGCAGCAGGGCTGCCGCCACCCTCGACATGGCGTACATCCCGGAC
GGCCTCTCGCCTACCGAGTGGAAGAAGATTCAGGCCGAAGAGAAGAAGAA
GTTAGCTAGCCTCGGTAAGGTTGGACCACAAAGGTTCAAGAGCCGCAGCT
TTCAGGCGTGGCAGGAGTCTGGTCAAGGTCATCTCTTCCCCGTTGATCCG
AAGAAGGTACGT
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