mRNA_H-elongata_contig100311.35.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: D7G4S4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S4_ECTSI) HSP 1 Score: 135 bits (341), Expect = 1.280e-37 Identity = 69/102 (67.65%), Postives = 79/102 (77.45%), Query Frame = 1 Query: 1 MRYAVTLTLAAVVAAGSVVAFAPPSAPLRRVSVSSRAAATLDMAYIPDGLSPTEWKKIQAEEKKKLASLGKVGPQRFKSRSFQAWQESGQGHLFPVDPKKVR 306 MR T +AA+ SVVAFAPPSAPLR V+ S ++A L M YIPDGLSP EWKKI+ +KKK +LGK+GP RFKSRSFQAWQESG GHLFPVDPKKV+ Sbjct: 1 MRTVSTFAVAALAGTSSVVAFAPPSAPLRPVTTRSSSSAALKMVYIPDGLSPAEWKKIKDADKKKQENLGKLGPSRFKSRSFQAWQESGAGHLFPVDPKKVK 102
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: D7FWZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWZ5_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 1.630e-23 Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 1 Query: 94 SVSSRAAATLDMAYIPDGLSPTEWKKIQ---AEEKKKLASLGKVGPQRFKSRSFQAWQESGQGHLFPVDPKKVR 306 S S + A LDM Y+PDGLSP +WKK+Q AE+KKK+ LG+VG + FKSRS QAWQE G GHLFPVDPKKV+ Sbjct: 54 SCSRQRRADLDMKYVPDGLSPEQWKKMQKEEAEKKKKMGDLGQVGVKSFKSRSLQAWQEDGAGHLFPVDPKKVK 127
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A7S2US33_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US33_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 8.870e-19 Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 1 Query: 106 RAAATLDMAYIPDGLSPTEWKKIQAEEKKKLASLGKVGPQRFKSRSFQAWQESGQGHLFPVDPKKVR 306 R L M Y+P+GL+P +WKKIQ ++K K +LG++GP+RFKSRSF AWQ +G HLFPVDPKKV+ Sbjct: 33 RTCTPLRMGYVPEGLTPEQWKKIQEKDKAK-GNLGEMGPKRFKSRSFAAWQAAGGKHLFPVDPKKVK 98
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A836CGF0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF0_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 9.290e-17 Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 1 Query: 70 PSAPLRRVSVSSRAAATLDMAYIPDGLSPTEWKKIQAEEKKKLA-SLGKVGPQRFKSRSFQAWQESGQ----GHLFPVDPKKVR 306 PSA L +++ A ++L MAYIPDGL+P +WK I+ +E++K + +LG+VG FKSRSFQAWQE+ + GHLFPVDP KV+ Sbjct: 22 PSAALP-AALARPATSSLSMAYIPDGLTPEQWKVIKEKEQEKASKNLGRVGATSFKSRSFQAWQEAMERGEGGHLFPVDPVKVK 104
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A6S9GSP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GSP2_HETAK) HSP 1 Score: 80.9 bits (198), Expect = 1.510e-16 Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 70 PSAPLRRVSVSSRAAATLDMAYIPDGLSPTEWKKIQAEEKKKLASLGKVGPQRFKSRSFQAWQESGQGHLFPVDPKKVR 306 PSA +R+SV + Y+PDGLS ++ KI+ EE +KL +LGKVGP RFKSRSF W +G HLFPVDP+KV+ Sbjct: 23 PSA--QRLSVVRNESNVQMKGYVPDGLSAEQYAKIKKEEAEKLKNLGKVGPNRFKSRSFADWHAAGGKHLFPVDPRKVK 99
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A7R9UCL3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCL3_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.820e-15 Identity = 43/82 (52.44%), Postives = 53/82 (64.63%), Query Frame = 1 Query: 58 AFAPPSAPLRRVSVSSRAAA-TLDMAYIPDGLSPTEWKKIQAEEKKKLA--SLGKVGPQRFKSRSFQAWQESGQGHLFPVDP 294 AFAPP + SSR L M Y+PDG+SP +WKK+QA+EK K +LG G +F+SRS QAWQE+G HLFP DP Sbjct: 48 AFAPPG-----MLTSSRGTRFQLSMGYVPDGMSPEQWKKMQAKEKSKSKGKNLGATGITKFQSRSLQAWQEAGAKHLFPTDP 124
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A835ZE56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE56_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 5.950e-13 Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1 Query: 127 MAYIPDGLSPTEWKKIQAEEKKKLA-SLGKVGPQRFKSRSFQAWQ---ESGQG-HLFPVDPKKVR 306 M YIPDGL+ +W I+ +E+ K + +LG+VG FKSRSFQAWQ E+G+G HLFPVDP+KV+ Sbjct: 42 MRYIPDGLTQAQWDAIKEKEQAKASKNLGRVGATSFKSRSFQAWQQAMENGEGGHLFPVDPRKVK 106
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A835YZ40_9STRA (BSD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ40_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 3.490e-11 Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = 1 Query: 16 TLTLAAVVAAGSVVAFAPPSAPLRRVSVSSRAAATLDMAYIPDGLSPTEWKKIQAEEKKKLA-SLGKVGPQRFKSRSFQ------AWQESGQGHLFPVDPKKVR 306 T+ LAA + A AFAP +A +V+ ++L MAYIPDGL+P +WK I+ +E+ +LG VG RFKSRSF+ A GHLFPVD KV+ Sbjct: 633 TVVLAAALVASGADAFAPRAA--LPTAVARPTTSSLSMAYIPDGLTPEQWKAIKDKEQANAGKNLGVVGTTRFKSRSFEYTHSTPALLRVSGGHLFPVDLSKVK 734
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A7S0XF66_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XF66_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 4.010e-11 Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1 Query: 118 TLDMAYIPDGLSPTEWKKIQAEEKKKLA--SLGKVGPQRFKSRSFQAWQESGQGHLFPVDPK 297 +L M YIPDGLS +W++I+ GKVG +F+SRSF+AWQ+SGQ +LFPVDPK Sbjct: 38 SLKMEYIPDGLSKKKWEEIKXXXXXXXXXXDFGKVGITKFQSRSFEAWQKSGQKNLFPVDPK 99
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Match: A0A8J2S8X9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S8X9_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.340e-10 Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1 Query: 52 VVAFAPPSAPLRRVSVSSRAAATLDMAYIPDGLSPTEWKKIQAEEKKKLASLGKVGPQRFKSRSFQAWQ---ESGQG-HLFPVDPKKVR 306 +VA A SA + S S AT AY+P G+SP EW+KI+A+EKK +LG G + FKSRSF ++ E G+ HLF V+P++VR Sbjct: 58 IVALALSSAAAFQASTPSVRPATQLSAYVPSGMSPEEWEKIKAKEKKAKTNLGAGGARGFKSRSFDSFVAALEKGEADHLFAVNPEEVR 146 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100311.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100311.35.1 >prot_H-elongata_contig100311.35.1 ID=prot_H-elongata_contig100311.35.1|Name=mRNA_H-elongata_contig100311.35.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp MRYAVTLTLAAVVAAGSVVAFAPPSAPLRRVSVSSRAAATLDMAYIPDGLback to top mRNA from alignment at H-elongata_contig100311:1156..1461- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100311.35.1 ID=mRNA_H-elongata_contig100311.35.1|Name=mRNA_H-elongata_contig100311.35.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig100311:1156..1461- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100311:1156..1461- >mRNA_H-elongata_contig100311.35.1 ID=mRNA_H-elongata_contig100311.35.1|Name=mRNA_H-elongata_contig100311.35.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig100311:1156..1461- (Himanthalia elongata Himel1 dioecious)back to top |