mRNA_H-elongata_contig100304.33.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100304.33.1
Unique NamemRNA_H-elongata_contig100304.33.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A6H5KX35_9PHAE (Defective in cullin neddylation protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX35_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.070e-28
Identity = 60/84 (71.43%), Postives = 64/84 (76.19%), Query Frame = 3 
Query:  432 VMGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKTKRGLAAGAQSRP*SLSSP 683
            VMG RSRYTE FV+FL QCP NTRVTFDQWSSFLEFSNTV   F+GYDEDGAWPILLDE+VEY+K K     GA S     S P
Sbjct:  161 VMGARSRYTEAFVKFLKQCPANTRVTFDQWSSFLEFSNTVKEGFEGYDEDGAWPILLDEFVEYTKGKSANEGGAASASGQKSRP 244
[Close]
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A6U1LU97_9STRA (Defective in cullin neddylation protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LU97_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.870e-17
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3 
Query:  417 VLKLQVMGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKT 629
            +L + +   RS + E F+ FL QCPPNTR+T DQW+SFLEFS  V  D + YDE+GAWP LLDEYVE+ ++
Sbjct:  155 LLPMVLDSNRSPHLEGFLTFLAQCPPNTRITMDQWNSFLEFSYQVGPDLNEYDENGAWPTLLDEYVEFIRS 225
[Close]
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: F0YLQ8_AURAN (Defective in cullin neddylation protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLQ8_AURAN)

HSP 1 Score: 87.4 bits (215), Expect = 2.500e-16
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 3 
Query:  408 IINVLKLQVMGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKTKRGL 641
            I+  L    +G RS +T  F+ FL +    TRVT DQW SFLEFS+TV+ DF+GY+EDGAWP+LLDEYVE ++  + +
Sbjct:  100 IVAALLPIAIGDRSAHTASFLAFL-ETSSTTRVTLDQWCSFLEFSDTVAPDFEGYEEDGAWPLLLDEYVEQARADKAV 176
[Close]
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A7S2CD53_9STRA (Defective in cullin neddylation protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CD53_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.920e-15
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 3 
Query:  408 IINVLKLQVMGQRSRYTEEFVEFLMQCPPN--TRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEY 620
            ++ VL   V+  RS +T++F+ FL   P N  TR+T DQW+SFLEFS +V  DF GYDED AWP+L+DE+VE+
Sbjct:   25 LVLVLLPMVIADRSMFTKKFLSFL---PENAITRITADQWNSFLEFSLSVGEDFTGYDEDAAWPLLMDEFVEW 94
[Close]
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A7S2D3W8_9STRA (Defective in cullin neddylation protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3W8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.360e-14
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 3 
Query:  408 IINVLKLQVMGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKTKR 635
            I+ +L L +M  RS + +EF+EFL  C   +R+T DQW+SFLEFS+ VS D  GY+ED AWP+LLDE+VE+ + K+
Sbjct:  189 IMELLPLCMMN-RSIFLQEFLEFLPTCG-TSRITADQWNSFLEFSHAVSADLSGYEEDSAWPLLLDEFVEWKQAKK 262
[Close]
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A836CN21_9STRA (Defective in cullin neddylation protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN21_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.740e-14
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  432 VMGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKTK 632
            VMG RS +T  FV+FL     N  +TFDQW+SFLEF+  +  D   Y ++GAWPILLDEYV + K +
Sbjct:   60 VMGNRSPHTHTFVQFLEARTSNDNMTFDQWNSFLEFTRAIGQDLSEYSDEGAWPILLDEYVAWYKDR 126
[Close]
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A6S8ER72_9STRA (Defective in cullin neddylation protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8ER72_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.190e-13
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 3 
Query:  408 IINVLKLQVMGQRSRYTEEFVEFLMQCPP-NTRVTFDQWSSFLEFSNTVSG-DFDGYDEDGAWPILLDEYVEYSKTKRGLAAGA 653
            I+ VL    +  RS +T  F+EFL    P N R+T DQW SFLEFS  VS  DF GY+ DGAWP+LLD+YV+ +K   GL++ +
Sbjct:  150 IVRVLLPIAICDRSEHTVPFLEFLESSQPDNLRLTLDQWCSFLEFSYKVSSTDFSGYEPDGAWPLLLDDYVDTTKRNMGLSSSS 233
[Close]
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A814W2I7_9BILA (Defective in cullin neddylation protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814W2I7_9BILA)

HSP 1 Score: 76.3 bits (186), Expect = 5.240e-13
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 3 
Query:  390 TSFAGTIINVLKLQVMGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKTKRGLAAGAQS 659
            TS  GT  N  + Q   QR +Y + +++FL +      +T D W   LEFS T+  DF  YD DGAWP+LLDE+VEY+K + G++   Q+
Sbjct:   33 TSVNGTASNHKQQQ---QRFKYLDLWLKFLEEKAAQRSITKDTWDLLLEFSTTIKDDFTNYDFDGAWPVLLDEFVEYAKKETGISTTEQN 119
[Close]
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A7S2S3A0_9STRA (Defective in cullin neddylation protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3A0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.160e-12
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:  432 VMGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKTKR 635
            V+  RS +TE F+EFL       R++ D+W+SFLEFS  VS D   Y++DGAWP LLDE+VE+SK ++
Sbjct:  160 VIADRSPFTEAFIEFLGTAS-RARISADEWNSFLEFSKDVSPDLSLYEDDGAWPSLLDEFVEWSKARQ 226
[Close]
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A815LMW0_9BILA (Defective in cullin neddylation protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815LMW0_9BILA)

HSP 1 Score: 75.1 bits (183), Expect = 1.440e-11
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 3 
Query:  441 QRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKTKRGLAAGAQSRP*SLSSPVNVMLCS 704
            QR +Y + +++FL +      +T D W   LEFS T+  DF  YD DGAWP+LLDE+VEY+K + G+    +     + S +   L S
Sbjct:   32 QRFKYLDLWLKFLEEKASQRSITKDTWDLLLEFSTTIKDDFTNYDFDGAWPVLLDEFVEYAKKETGMTTTTEQNSNHIQSTIMYSLTS 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX35_9PHAE1.070e-2871.43Defective in cullin neddylation protein n=1 Tax=Ec... [more]
A0A6U1LU97_9STRA5.870e-1756.34Defective in cullin neddylation protein n=1 Tax=Fi... [more]
F0YLQ8_AURAN2.500e-1652.56Defective in cullin neddylation protein (Fragment)... [more]
A0A7S2CD53_9STRA8.920e-1553.42Defective in cullin neddylation protein n=1 Tax=Fl... [more]
A0A7S2D3W8_9STRA2.360e-1452.63Defective in cullin neddylation protein n=2 Tax=Fl... [more]
A0A836CN21_9STRA4.740e-1452.24Defective in cullin neddylation protein n=1 Tax=Tr... [more]
A0A6S8ER72_9STRA1.190e-1350.00Defective in cullin neddylation protein n=1 Tax=Au... [more]
A0A814W2I7_9BILA5.240e-1342.22Defective in cullin neddylation protein n=1 Tax=Di... [more]
A0A7S2S3A0_9STRA7.160e-1251.47Defective in cullin neddylation protein n=1 Tax=Rh... [more]
A0A815LMW0_9BILA1.440e-1138.64Defective in cullin neddylation protein n=1 Tax=Di... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100304contigH-elongata_contig100304:2..2388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2.4e-15
Seed eggNOG ortholog44056.XP_009041331.1
Preferred nameDCUN1D5
KEGG koko:K17822,ko:K17824
GOsGO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009892,GO:0009893,GO:0009987,GO:0010604,GO:0010605,GO:0019222,GO:0019538,GO:0019899,GO:0031323,GO:0031324,GO:0031325,GO:0031396,GO:0031398,GO:0031399,GO:0031400,GO:0031401,GO:0031624,GO:0032182,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032991,GO:0036211,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044390,GO:0044424,GO:0044464,GO:0045116,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0060255,GO:0065007,GO:0065009,GO:0070647,GO:0071704,GO:0080090,GO:0097602,GO:1901564,GO:1902494,GO:1903320,GO:1903321,GO:1903322,GO:1990234,GO:2000434,GO:2000435
EggNOG free text desc.cullin family protein binding
EggNOG OGsKOG3077@1,KOG3077@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size1803
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100304.33.1prot_H-elongata_contig100304.33.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100304 436..1253 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929545.3240123-UTR-H-elongata_contig100304:1..4351622929545.3240123-UTR-H-elongata_contig100304:1..435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100304 2..435 +
1691679062.95155-UTR-H-elongata_contig100304:1..4351691679062.95155-UTR-H-elongata_contig100304:1..435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100304 2..435 +
1622929545.3676507-UTR-H-elongata_contig100304:1253..23881622929545.3676507-UTR-H-elongata_contig100304:1253..2388Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100304 1254..2388 +
1691679062.980659-UTR-H-elongata_contig100304:1253..23881691679062.980659-UTR-H-elongata_contig100304:1253..2388Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100304 1254..2388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929545.337604-CDS-H-elongata_contig100304:435..5891622929545.337604-CDS-H-elongata_contig100304:435..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100304 436..589 +
1691679062.9614098-CDS-H-elongata_contig100304:435..5891691679062.9614098-CDS-H-elongata_contig100304:435..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100304 436..589 +
1622929545.352734-CDS-H-elongata_contig100304:1173..12531622929545.352734-CDS-H-elongata_contig100304:1173..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100304 1174..1253 +
1691679062.9712348-CDS-H-elongata_contig100304:1173..12531691679062.9712348-CDS-H-elongata_contig100304:1173..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100304 1174..1253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100304.33.1

>prot_H-elongata_contig100304.33.1 ID=prot_H-elongata_contig100304.33.1|Name=mRNA_H-elongata_contig100304.33.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDG
AWPILLDEYVEYSKTKRGLAAGAQSRP*
back to top

mRNA from alignment at H-elongata_contig100304:2..2388+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100304.33.1 ID=mRNA_H-elongata_contig100304.33.1|Name=mRNA_H-elongata_contig100304.33.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2387bp|location=Sequence derived from alignment at H-elongata_contig100304:2..2388+ (Himanthalia elongata Himel1 dioecious)
TGATTGTACGCGACACTCGAGTAGTGAAGCCGGTAACGGCTAGTTCGTTA
GGTTATTTCGGCCCCCCTCACAGATGCTTCTTTTCTGTGTGGAAAACGCG
GTAATCGACAAGGTGTACAAGTAGGGCTGCTCCTGGACTTTTGCCAACAT
TTGCGATAGAAATTCGAAGGCGTGAACCAACAGAGGAGATAATAGGTTGG
TAAAGCCGTTAGGTTCACAGGCAGACGGGGGCAAGGGGGGTAACTTTTTT
TTTTGTAGGGTTTTTTATCGGTAAACAAAACCTACCGCGTTGAATGAGTG
GCGCACCATTGCCAGAAAATGACACGAAAAAAATCATTGCAAAGCCATAA
AATGGATATCACCCCTCCTAACCTTTCTCGATTCAAATTACTTCGTTTGC
GGGCACGATAATAAACGTGTTAAAATTACAGGTTATGGGCCAGCGCAGCC
GTTATACAGAGGAATTCGTGGAGTTCTTGATGCAGTGTCCACCGAACACG
AGGGTGACGTTCGACCAATGGAGCTCTTTCCTGGAATTTTCCAACACCGT
TTCAGGCGATTTCGATGGCTACGATGAGGATGGCGCCTGTAAGTTCAGCA
CTTTTTTTTTTTTTTTTTTTTTTAGGTTTTTTTGTTTATTTTGTTTTAAA
ATTTTTATCAAAACGAGGGCGTGCAAAGGAAAGATCCATGTATCCTCACG
GCAAAAAATTAATGGTCGAAACCTCGTGGAGGCGGTAAATTATTTATTTG
GGAAGGGGCGAAAGCTCAAAATATTTCAAACACCAAAAATTCAAAGTAGT
AATTTTTGAAACGAAGGCCTTCTCACCACCAATCACACTCAAGTTTTACC
AGAGATGACATGCTCCCTCTTTTCATTTCTTCTTTTTCTTTAAAAAAAAG
TATAAACCCAAACCTTCTTATTATTCAGCGTGACATGTTTTTTTTGTCAA
CTCCCAAGTGAAATCCTTCCAGGTACCCGTCAAAACCCAAATCGTTTTGG
AGCCTACTCTATTTCTCTTGGCAATATCCCTTCTGCCCATTTCTTCTAAT
ATTGTTCACTATATTAGTGTCTACCTCTACCCTGTAGCCCAATTCTTCTG
CTGCTTCGACTCTCTGCCTTTACATTTCTAGTACGCTGCATCTCCCCGAT
GTCTACCCGAAATCTCTTCCAGGGCCGATCCTGCTGGACGAATACGTGGA
GTATTCAAAGACCAAGAGGGGGTTGGCGGCGGGAGCACAGAGTCGACCAT
GATCTCTCTCCTCCCCGGTCAATGTCATGCTCTGCTCTTGGAGGAGGGTA
GGCAAGGTTCTTGGATAGGATGTCTGATCGAAGGAATGGTTATTTGAATG
AGAATCGATAGCTCTTGGGATAAGCAACGGATGGCAGCGCTCGGCAACGA
AAAGCACGGGAGATGGACTCTTTGTAGGATACCTTACGTGGTCAAACAAT
ATACCTTTAAAATGTTTTCTTTGGTAGTCGAGAAAATCGAGGAGCTTTAG
GGTGCCACGTCATGTCCTTGTGTCTCCTCGGTAAATGGTAAATAAACGCC
TACTTCAAAACACTCGCTAACCCTGATATATAGTTTTTTCTACAAATATC
TTCCCTTTTTCTCTCTTTTTTTCCCGCTTTTTTGGGGGTGTCAAAAGTAA
AAGGGTGATTGCTTGGATTTTTTTTCATGTCTCTTTTTCGTAGAGAGCGA
GTTTCTCTCTCGGCTGCGCAATGTTTGATATTGTGTTAGCGTTGTGCTTT
GGAGAGACGTTGTGTTAGCATATTCTCTTTCTTTTTCTTTTCTTTTTTGA
TTTTTCCTTTCGATGTGTTTGTTGTTACTGTTTGTGGCTAGCGTCTGTTT
TGCAGCTCTAGGCGCGAGGCCGATGTGTTGTGTAAATTTCGAGAAGATAA
TCCAATTGGAGAGTTGTTTTGAGCTCACAAATAATGCTTCGTGTTCAGTC
GAAACTGATTTTTCACTTTTGCTCTAAAATACTGAGCTGTACAACCCGAG
TAAGAACTGTCACCCCTATATATGAATGAGTTCATATGTTTTAACGAATA
ATGTCTTAAACGATGGCATACAGGGTTGGAGCCTCTAGTACTATACTATG
GCAGAATGAACTGCCGTCTATAATATACTAAATACACACTAGTAAGATCT
TGTTCTATATGCTGTCGAATGTACAATTCCTGTACGAACTGTCGCCTAGA
GCTATATCGTTAGTACTATATGTTCGATTCCACAGCTTCAGGGCGAACTT
TCCCTTTTATTACTGCACCATTCGAAACTTGTCACGTCATATATACTAAT
TATAGTTGTTATTGTTTGCTTGACAGGATACGACAGTAATATACAGTACT
GTATACCATACTATTTGACGGTAGAGATAAACGCCGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig100304:2..2388+

>mRNA_H-elongata_contig100304.33.1 ID=mRNA_H-elongata_contig100304.33.1|Name=mRNA_H-elongata_contig100304.33.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig100304:2..2388+ (Himanthalia elongata Himel1 dioecious)
ATGGGCCAGCGCAGCCGTTATACAGAGGAATTCGTGGAGTTCTTGATGCA
GTGTCCACCGAACACGAGGGTGACGTTCGACCAATGGAGCTCTTTCCTGG
AATTTTCCAACACCGTTTCAGGCGATTTCGATGGCTACGATGAGGATGGC
GCCTATGGGCCAGCGCAGCCGTTATACAGAGGAATTCGTGGAGTTCTTGA
TGCAGTGTCCACCGAACACGAGGGTGACGTTCGACCAATGGAGCTCTTTC
CTGGAATTTTCCAACACCGTTTCAGGCGATTTCGATGGCTACGATGAGGA
TGGCGCCTGGCCGATCCTGCTGGACGAATACGTGGAGTATTCAAAGACCA
AGAGGGGGTTGGCGGCGGGAGCACAGAGTCGACCATGAGGCCGATCCTGC
TGGACGAATACGTGGAGTATTCAAAGACCAAGAGGGGGTTGGCGGCGGGA
GCACAGAGTCGACCATGA
back to top