mRNA_H-elongata_contig100304.33.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A6H5KX35_9PHAE (Defective in cullin neddylation protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX35_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.070e-28 Identity = 60/84 (71.43%), Postives = 64/84 (76.19%), Query Frame = 3 Query: 432 VMGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKTKRGLAAGAQSRP*SLSSP 683
VMG RSRYTE FV+FL QCP NTRVTFDQWSSFLEFSNTV F+GYDEDGAWPILLDE+VEY+K K GA S S P
Sbjct: 161 VMGARSRYTEAFVKFLKQCPANTRVTFDQWSSFLEFSNTVKEGFEGYDEDGAWPILLDEFVEYTKGKSANEGGAASASGQKSRP 244
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A6U1LU97_9STRA (Defective in cullin neddylation protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LU97_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 5.870e-17 Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3 Query: 417 VLKLQVMGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKT 629
+L + + RS + E F+ FL QCPPNTR+T DQW+SFLEFS V D + YDE+GAWP LLDEYVE+ ++
Sbjct: 155 LLPMVLDSNRSPHLEGFLTFLAQCPPNTRITMDQWNSFLEFSYQVGPDLNEYDENGAWPTLLDEYVEFIRS 225
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: F0YLQ8_AURAN (Defective in cullin neddylation protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLQ8_AURAN) HSP 1 Score: 87.4 bits (215), Expect = 2.500e-16 Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 3 Query: 408 IINVLKLQVMGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKTKRGL 641
I+ L +G RS +T F+ FL + TRVT DQW SFLEFS+TV+ DF+GY+EDGAWP+LLDEYVE ++ + +
Sbjct: 100 IVAALLPIAIGDRSAHTASFLAFL-ETSSTTRVTLDQWCSFLEFSDTVAPDFEGYEEDGAWPLLLDEYVEQARADKAV 176
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A7S2CD53_9STRA (Defective in cullin neddylation protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CD53_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 8.920e-15 Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 3 Query: 408 IINVLKLQVMGQRSRYTEEFVEFLMQCPPN--TRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEY 620
++ VL V+ RS +T++F+ FL P N TR+T DQW+SFLEFS +V DF GYDED AWP+L+DE+VE+
Sbjct: 25 LVLVLLPMVIADRSMFTKKFLSFL---PENAITRITADQWNSFLEFSLSVGEDFTGYDEDAAWPLLMDEFVEW 94
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A7S2D3W8_9STRA (Defective in cullin neddylation protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3W8_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 2.360e-14 Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 3 Query: 408 IINVLKLQVMGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKTKR 635
I+ +L L +M RS + +EF+EFL C +R+T DQW+SFLEFS+ VS D GY+ED AWP+LLDE+VE+ + K+
Sbjct: 189 IMELLPLCMMN-RSIFLQEFLEFLPTCG-TSRITADQWNSFLEFSHAVSADLSGYEEDSAWPLLLDEFVEWKQAKK 262
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A836CN21_9STRA (Defective in cullin neddylation protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN21_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 4.740e-14 Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 3 Query: 432 VMGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKTK 632
VMG RS +T FV+FL N +TFDQW+SFLEF+ + D Y ++GAWPILLDEYV + K +
Sbjct: 60 VMGNRSPHTHTFVQFLEARTSNDNMTFDQWNSFLEFTRAIGQDLSEYSDEGAWPILLDEYVAWYKDR 126
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A6S8ER72_9STRA (Defective in cullin neddylation protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8ER72_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.190e-13 Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 3 Query: 408 IINVLKLQVMGQRSRYTEEFVEFLMQCPP-NTRVTFDQWSSFLEFSNTVSG-DFDGYDEDGAWPILLDEYVEYSKTKRGLAAGA 653
I+ VL + RS +T F+EFL P N R+T DQW SFLEFS VS DF GY+ DGAWP+LLD+YV+ +K GL++ +
Sbjct: 150 IVRVLLPIAICDRSEHTVPFLEFLESSQPDNLRLTLDQWCSFLEFSYKVSSTDFSGYEPDGAWPLLLDDYVDTTKRNMGLSSSS 233
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A814W2I7_9BILA (Defective in cullin neddylation protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814W2I7_9BILA) HSP 1 Score: 76.3 bits (186), Expect = 5.240e-13 Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 3 Query: 390 TSFAGTIINVLKLQVMGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKTKRGLAAGAQS 659
TS GT N + Q QR +Y + +++FL + +T D W LEFS T+ DF YD DGAWP+LLDE+VEY+K + G++ Q+
Sbjct: 33 TSVNGTASNHKQQQ---QRFKYLDLWLKFLEEKAAQRSITKDTWDLLLEFSTTIKDDFTNYDFDGAWPVLLDEFVEYAKKETGISTTEQN 119
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A7S2S3A0_9STRA (Defective in cullin neddylation protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3A0_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 7.160e-12 Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 3 Query: 432 VMGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKTKR 635
V+ RS +TE F+EFL R++ D+W+SFLEFS VS D Y++DGAWP LLDE+VE+SK ++
Sbjct: 160 VIADRSPFTEAFIEFLGTAS-RARISADEWNSFLEFSKDVSPDLSLYEDDGAWPSLLDEFVEWSKARQ 226
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Match: A0A815LMW0_9BILA (Defective in cullin neddylation protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815LMW0_9BILA) HSP 1 Score: 75.1 bits (183), Expect = 1.440e-11 Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 3 Query: 441 QRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGAWPILLDEYVEYSKTKRGLAAGAQSRP*SLSSPVNVMLCS 704
QR +Y + +++FL + +T D W LEFS T+ DF YD DGAWP+LLDE+VEY+K + G+ + + S + L S
Sbjct: 32 QRFKYLDLWLKFLEEKASQRSITKDTWDLLLEFSTTIKDDFTNYDFDGAWPVLLDEFVEYAKKETGMTTTTEQNSNHIQSTIMYSLTS 119 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100304.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100304.33.1 >prot_H-elongata_contig100304.33.1 ID=prot_H-elongata_contig100304.33.1|Name=mRNA_H-elongata_contig100304.33.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp MGQRSRYTEEFVEFLMQCPPNTRVTFDQWSSFLEFSNTVSGDFDGYDEDGback to top mRNA from alignment at H-elongata_contig100304:2..2388+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100304.33.1 ID=mRNA_H-elongata_contig100304.33.1|Name=mRNA_H-elongata_contig100304.33.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2387bp|location=Sequence derived from alignment at H-elongata_contig100304:2..2388+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100304:2..2388+ >mRNA_H-elongata_contig100304.33.1 ID=mRNA_H-elongata_contig100304.33.1|Name=mRNA_H-elongata_contig100304.33.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig100304:2..2388+ (Himanthalia elongata Himel1 dioecious)back to top |