mRNA_H-elongata_contig100265.32.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100265.32.1
Unique NamemRNA_H-elongata_contig100265.32.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: D7G3T7_ECTSI (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T7_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.780e-25
Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   34 RVPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQRPYT 258
            R PLR + GTH+++AHVG PPQRVSLIVDTGS+TLAFPC GC +CR   R  FWD   S T +E++CD C   YT
Sbjct:   82 RFPLRWSEGTHFVYAHVGTPPQRVSLIVDTGSFTLAFPCVGCDKCRPRSRTPFWDPGASATAAELSCDECHGDYT 156          
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A6H5LN99_9PHAE (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN99_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.850e-24
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   34 RVPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQRPYT 258
            R+PLR + GTH+++AHVG PPQRVSLI+DTGS+ LAFPC GC +CR   R  FWD   S T +E++CD C   YT
Sbjct:  151 RIPLRWSEGTHFVYAHVGTPPQRVSLILDTGSFMLAFPCVGCDKCRPRSRTPFWDPGASATAAELSCDECHGDYT 225          
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A7S2FBW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBW1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.570e-16
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   37 VPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQ 246
             PL   +GTHY+  +VG PPQRVS+IVDTGS+  AFPC GC+ C       ++D ++S T   V C  C+
Sbjct:   32 APLWEGIGTHYVHIYVGTPPQRVSVIVDTGSHHTAFPCDGCKNCGK-HTDPYFDPKKSSTSQTVGCSQCK 100          
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A835ZHP7_9STRA (Aspartic peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHP7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.820e-15
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   31 ERVPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQRPY 255
            E VPL    GTH  + +VG PPQRVS+I+DTGS+  AFPCKGC+ C      ++WD + S T +   C  C   +
Sbjct:    4 EEVPLIPGYGTHIAYVYVGTPPQRVSVILDTGSHFTAFPCKGCKACG-DHTDSYWDFDLSSTATLTKCPDCHGNF 77          
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A835ZJF3_9STRA (Aspartic peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 8.120e-15
Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   58 GTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQRPYT 258
            GTH  + +VG PPQRVS+I+DTGS+  AFPCKGCQ C       +WD   S T     C AC+  +T
Sbjct:    8 GTHIAYLYVGTPPQRVSVIIDTGSHLTAFPCKGCQACGK-HTDPYWDFAASSTAKITTCAACKGTFT 73          
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A7S3YC94_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YC94_HETAK)

HSP 1 Score: 77.0 bits (188), Expect = 1.440e-14
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   58 GTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQ 246
            GTH+ + +VG PPQRVS+IVDTGS+  AFPCKGC  C       ++D+  S TG ++ C  CQ
Sbjct:   67 GTHFAYVYVGTPPQRVSVIVDTGSHYTAFPCKGCSGCG-SHTDPYFDLSSSSTGHQLGCHECQ 128          
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A836CAB1_9STRA (Aspartic peptidase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAB1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.300e-14
Identity = 34/68 (50.00%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   58 GTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQ-AFWDIEQSGTGSEVACDACQRPYT 258
            GTH  + +VG PPQRVS+I+DTGS   AFPC GCQ C  GQ +  +WD   S T    +C  C   YT
Sbjct:    3 GTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGC--GQHEDPYWDRSASSTAQVSSCQQCVGDYT 68          
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A1W0A7M6_9STRA (Aspartyl protease family A01B n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7M6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.740e-14
Identity = 41/83 (49.40%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   16 RRLAH---ERVPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQRPY 255
            RRLA+   E VPL   +GTHY +A+VGNPPQR SLIVDTGS  +AFPC GCQ C       F D   S T     C   +  +
Sbjct:   25 RRLANGSFEAVPLTLGIGTHYTWAYVGNPPQRTSLIVDTGSNVMAFPCTGCQGCGNHTDNPF-DTSLSSTVEYPTCSTSKTAF 106          
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A7S2WCI1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCI1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.580e-14
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   37 VPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQ 246
            +PL   +GTHY F +VG PPQRVS+I+DTGS+  AFPC+GC+ C        +    S T S + C+AC+
Sbjct:   78 IPLFEGIGTHYAFIYVGTPPQRVSVIMDTGSHLTAFPCEGCKTCG-SHTDPHFKPSGSSTNSYLPCNACK 146          
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A6H5JRT4_9PHAE (Peptidase A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRT4_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.840e-13
Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 1
Query:   10 RSRRLAHERVPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQRPY 255
            RS  L+ E  PL    GTH+ + + G PPQRVS+I+DTGS+  AFPC GC+ C        WD  +S +   V C+ C   +
Sbjct:  108 RSLYLSFEDTPLFPGWGTHFAYVYAGTPPQRVSVIIDTGSHFTAFPCSGCKNCG-SHTDPHWDQSKSTSSHIVTCEDCHGSF 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3T7_ECTSI1.780e-2561.33Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
A0A6H5LN99_9PHAE3.850e-2458.67Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
A0A7S2FBW1_9STRA6.570e-1647.14Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A835ZHP7_9STRA7.820e-1545.33Aspartic peptidase domain-containing protein n=1 T... [more]
A0A835ZJF3_9STRA8.120e-1549.25Aspartic peptidase domain-containing protein n=1 T... [more]
A0A7S3YC94_HETAK1.440e-1450.79Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CAB1_9STRA2.300e-1450.00Aspartic peptidase domain-containing protein (Frag... [more]
A0A1W0A7M6_9STRA3.740e-1449.40Aspartyl protease family A01B n=1 Tax=Thraustothec... [more]
A0A7S2WCI1_9STRA9.580e-1447.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5JRT4_9PHAE1.840e-1341.46Peptidase A1 domain-containing protein n=2 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100265contigH-elongata_contig100265:74..334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue7.3e-21
Seed eggNOG ortholog2880.D7G3T7
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG1339@1,KOG1339@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionAspartic peptidase
Ec32 orthologEc-00_006990.1
Exons1
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929545.270468-CDS-H-elongata_contig100265:73..3341622929545.270468-CDS-H-elongata_contig100265:73..334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100265 74..334 -
1691679062.9416533-CDS-H-elongata_contig100265:73..3341691679062.9416533-CDS-H-elongata_contig100265:73..334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100265 74..334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100265.32.1prot_H-elongata_contig100265.32.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100265 74..334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100265.32.1

>prot_H-elongata_contig100265.32.1 ID=prot_H-elongata_contig100265.32.1|Name=mRNA_H-elongata_contig100265.32.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
RFLRSRRLAHERVPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPC
KGCQECRMGQRQAFWDIEQSGTGSEVACDACQRPYT*
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mRNA from alignment at H-elongata_contig100265:74..334-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100265.32.1 ID=mRNA_H-elongata_contig100265.32.1|Name=mRNA_H-elongata_contig100265.32.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig100265:74..334- (Himanthalia elongata Himel1 dioecious)
AGGTTCCTTCGATCCAGGCGACTGGCCCACGAGCGCGTCCCTCTGCGCTC GAACCTGGGGACTCACTACCTCTTCGCCCACGTCGGGAACCCGCCGCAGC GAGTCAGCCTCATCGTGGACACCGGGAGCTACACGTTGGCTTTCCCTTGC AAAGGTTGCCAGGAATGTCGTATGGGCCAGAGGCAAGCCTTCTGGGATAT CGAGCAATCTGGAACGGGGTCCGAGGTCGCCTGTGACGCGTGTCAGCGCC CGTACACGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig100265:74..334-

>mRNA_H-elongata_contig100265.32.1 ID=mRNA_H-elongata_contig100265.32.1|Name=mRNA_H-elongata_contig100265.32.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig100265:74..334- (Himanthalia elongata Himel1 dioecious)
AGGTTCCTTCGATCCAGGCGACTGGCCCACGAGCGCGTCCCTCTGCGCTC
GAACCTGGGGACTCACTACCTCTTCGCCCACGTCGGGAACCCGCCGCAGC
GAGTCAGCCTCATCGTGGACACCGGGAGCTACACGTTGGCTTTCCCTTGC
AAAGGTTGCCAGGAATGTCGTATGGGCCAGAGGCAAGCCTTCTGGGATAT
CGAGCAATCTGGAACGGGGTCCGAGGTCGCCTGTGACGCGTGTCAGCGCC
CGTACACGTAAAGGTTCCTTCGATCCAGGCGACTGGCCCACGAGCGCGTC
CCTCTGCGCTCGAACCTGGGGACTCACTACCTCTTCGCCCACGTCGGGAA
CCCGCCGCAGCGAGTCAGCCTCATCGTGGACACCGGGAGCTACACGTTGG
CTTTCCCTTGCAAAGGTTGCCAGGAATGTCGTATGGGCCAGAGGCAAGCC
TTCTGGGATATCGAGCAATCTGGAACGGGGTCCGAGGTCGCCTGTGACGC
GTGTCAGCGCCCGTACACGTAA
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