mRNA_H-elongata_contig100265.32.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: D7G3T7_ECTSI (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T7_ECTSI) HSP 1 Score: 106 bits (264), Expect = 1.780e-25 Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 1 Query: 34 RVPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQRPYT 258 R PLR + GTH+++AHVG PPQRVSLIVDTGS+TLAFPC GC +CR R FWD S T +E++CD C YT Sbjct: 82 RFPLRWSEGTHFVYAHVGTPPQRVSLIVDTGSFTLAFPCVGCDKCRPRSRTPFWDPGASATAAELSCDECHGDYT 156
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A6H5LN99_9PHAE (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN99_9PHAE) HSP 1 Score: 104 bits (259), Expect = 3.850e-24 Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1 Query: 34 RVPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQRPYT 258 R+PLR + GTH+++AHVG PPQRVSLI+DTGS+ LAFPC GC +CR R FWD S T +E++CD C YT Sbjct: 151 RIPLRWSEGTHFVYAHVGTPPQRVSLILDTGSFMLAFPCVGCDKCRPRSRTPFWDPGASATAAELSCDECHGDYT 225
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A7S2FBW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBW1_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 6.570e-16 Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 1 Query: 37 VPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQ 246 PL +GTHY+ +VG PPQRVS+IVDTGS+ AFPC GC+ C ++D ++S T V C C+ Sbjct: 32 APLWEGIGTHYVHIYVGTPPQRVSVIVDTGSHHTAFPCDGCKNCGK-HTDPYFDPKKSSTSQTVGCSQCK 100
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A835ZHP7_9STRA (Aspartic peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHP7_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 7.820e-15 Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 1 Query: 31 ERVPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQRPY 255 E VPL GTH + +VG PPQRVS+I+DTGS+ AFPCKGC+ C ++WD + S T + C C + Sbjct: 4 EEVPLIPGYGTHIAYVYVGTPPQRVSVILDTGSHFTAFPCKGCKACG-DHTDSYWDFDLSSTATLTKCPDCHGNF 77
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A835ZJF3_9STRA (Aspartic peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF3_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 8.120e-15 Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 1 Query: 58 GTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQRPYT 258 GTH + +VG PPQRVS+I+DTGS+ AFPCKGCQ C +WD S T C AC+ +T Sbjct: 8 GTHIAYLYVGTPPQRVSVIIDTGSHLTAFPCKGCQACGK-HTDPYWDFAASSTAKITTCAACKGTFT 73
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A7S3YC94_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YC94_HETAK) HSP 1 Score: 77.0 bits (188), Expect = 1.440e-14 Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 1 Query: 58 GTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQ 246 GTH+ + +VG PPQRVS+IVDTGS+ AFPCKGC C ++D+ S TG ++ C CQ Sbjct: 67 GTHFAYVYVGTPPQRVSVIVDTGSHYTAFPCKGCSGCG-SHTDPYFDLSSSSTGHQLGCHECQ 128
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A836CAB1_9STRA (Aspartic peptidase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAB1_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 2.300e-14 Identity = 34/68 (50.00%), Postives = 41/68 (60.29%), Query Frame = 1 Query: 58 GTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQ-AFWDIEQSGTGSEVACDACQRPYT 258 GTH + +VG PPQRVS+I+DTGS AFPC GCQ C GQ + +WD S T +C C YT Sbjct: 3 GTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGC--GQHEDPYWDRSASSTAQVSSCQQCVGDYT 68
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A1W0A7M6_9STRA (Aspartyl protease family A01B n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7M6_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 3.740e-14 Identity = 41/83 (49.40%), Postives = 48/83 (57.83%), Query Frame = 1 Query: 16 RRLAH---ERVPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQRPY 255 RRLA+ E VPL +GTHY +A+VGNPPQR SLIVDTGS +AFPC GCQ C F D S T C + + Sbjct: 25 RRLANGSFEAVPLTLGIGTHYTWAYVGNPPQRTSLIVDTGSNVMAFPCTGCQGCGNHTDNPF-DTSLSSTVEYPTCSTSKTAF 106
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A7S2WCI1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCI1_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 9.580e-14 Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1 Query: 37 VPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQ 246 +PL +GTHY F +VG PPQRVS+I+DTGS+ AFPC+GC+ C + S T S + C+AC+ Sbjct: 78 IPLFEGIGTHYAFIYVGTPPQRVSVIMDTGSHLTAFPCEGCKTCG-SHTDPHFKPSGSSTNSYLPCNACK 146
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Match: A0A6H5JRT4_9PHAE (Peptidase A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRT4_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 1.840e-13 Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 1 Query: 10 RSRRLAHERVPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCKGCQECRMGQRQAFWDIEQSGTGSEVACDACQRPY 255 RS L+ E PL GTH+ + + G PPQRVS+I+DTGS+ AFPC GC+ C WD +S + V C+ C + Sbjct: 108 RSLYLSFEDTPLFPGWGTHFAYVYAGTPPQRVSVIIDTGSHFTAFPCSGCKNCG-SHTDPHWDQSKSTSSHIVTCEDCHGSF 188 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100265.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100265.32.1 >prot_H-elongata_contig100265.32.1 ID=prot_H-elongata_contig100265.32.1|Name=mRNA_H-elongata_contig100265.32.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp RFLRSRRLAHERVPLRSNLGTHYLFAHVGNPPQRVSLIVDTGSYTLAFPCback to top mRNA from alignment at H-elongata_contig100265:74..334- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100265.32.1 ID=mRNA_H-elongata_contig100265.32.1|Name=mRNA_H-elongata_contig100265.32.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig100265:74..334- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100265:74..334- >mRNA_H-elongata_contig100265.32.1 ID=mRNA_H-elongata_contig100265.32.1|Name=mRNA_H-elongata_contig100265.32.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig100265:74..334- (Himanthalia elongata Himel1 dioecious)back to top |