mRNA_H-elongata_contig10024.30.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig10024.30.1
Unique Name	mRNA_H-elongata_contig10024.30.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig10024.30.1 vs. uniprot

BLAST of mRNA_H-elongata_contig10024.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig10024	contig	H-elongata_contig10024:2429..3679 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	1251
Cds size	996
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig10024.30.1	prot_H-elongata_contig10024.30.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig10024 2431..3426 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929544.992252-UTR-H-elongata_contig10024:2428..2430	1622929544.992252-UTR-H-elongata_contig10024:2428..2430	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10024 2429..2430 +
1691679062.8443866-UTR-H-elongata_contig10024:2428..2430	1691679062.8443866-UTR-H-elongata_contig10024:2428..2430	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10024 2429..2430 +
1622929545.0243845-UTR-H-elongata_contig10024:3426..3679	1622929545.0243845-UTR-H-elongata_contig10024:3426..3679	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10024 3427..3679 +
1691679062.8892615-UTR-H-elongata_contig10024:3426..3679	1691679062.8892615-UTR-H-elongata_contig10024:3426..3679	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig10024 3427..3679 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929545.0100186-CDS-H-elongata_contig10024:2430..3426	1622929545.0100186-CDS-H-elongata_contig10024:2430..3426	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10024 2431..3426 +
1691679062.873688-CDS-H-elongata_contig10024:2430..3426	1691679062.873688-CDS-H-elongata_contig10024:2430..3426	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig10024 2431..3426 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig10024:2429..3679+
coding sequence from alignment at H-elongata_contig10024:2429..3679+

protein sequence of mRNA_H-elongata_contig10024.30.1

>prot_H-elongata_contig10024.30.1 ID=prot_H-elongata_contig10024.30.1|Name=mRNA_H-elongata_contig10024.30.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=332bp
MIDVARKSCASDGCFKQSVCCVAGNRKSEYFAGHAIDGMIPVGERCGSNE
SSKLPTYDVIGSRKREYCAVHDLQGMIGVVSKTCAGNGCSKHPTYGVAGS
KKPEYCAVHALEGMIDVAMKRCDGDINHPIYSVSDNKIHENCAVPSLEGR
IDLASKSCAKDGYFMRLAYGVAGSKAPESCVAHGMADVTYTGCASNGRCK
GPGYGAVGSIKPKYFTGHPVNGIMAVGKLNAGDGLTDSNTFSYSNGCCRS
ASDDVAVGAIQEYFAEHALKGMDISVAPNQARTRKRMPKTTARELSVLER
EITSKFKRPCYNALADAERVKIEVSLSLLRS*

mRNA from alignment at H-elongata_contig10024:2429..3679+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig10024.30.1 ID=mRNA_H-elongata_contig10024.30.1|Name=mRNA_H-elongata_contig10024.30.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1251bp|location=Sequence derived from alignment at H-elongata_contig10024:2429..3679+ (Himanthalia elongata Himel1 dioecious)
GGATGATCGACGTTGCGAGGAAGAGTTGTGCTAGCGATGGATGCTTCAAG
CAATCGGTCTGTTGCGTGGCTGGCAATAGGAAGTCAGAATACTTTGCGGG
GCATGCTATTGATGGGATGATCCCCGTTGGGGAAAGGTGTGGGAGTAATG
AATCCTCTAAGCTTCCGACCTACGATGTCATAGGCAGCAGAAAACGTGAA
TACTGCGCGGTGCATGATTTGCAAGGGATGATCGGCGTTGTAAGCAAGAC
GTGTGCTGGTAATGGATGCTCTAAACATCCGACTTACGGCGTGGCCGGCA
GCAAGAAACCAGAATACTGCGCGGTACATGCTTTGGAAGGAATGATCGAC
GTTGCGATGAAGAGGTGTGATGGTGATATTAATCATCCGATTTATAGCGT
TTCCGACAACAAGATACATGAAAACTGTGCAGTACCTTCCTTGGAAGGGA
GGATCGACTTAGCGAGCAAGAGTTGTGCTAAGGATGGATACTTTATGCGA
CTAGCCTATGGCGTTGCAGGTAGCAAAGCGCCGGAGTCCTGCGTGGCGCA
TGGGATGGCCGACGTTACTTATACGGGGTGCGCTAGCAATGGACGCTGTA
AAGGACCGGGCTATGGCGCGGTCGGTAGCATCAAACCGAAGTACTTTACC
GGCCATCCAGTGAATGGAATAATGGCCGTTGGGAAGTTGAATGCCGGCGA
TGGCTTAACCGATTCCAATACGTTTTCCTACAGCAACGGATGCTGCAGGA
GCGCGAGCGACGATGTTGCCGTCGGCGCGATACAGGAGTATTTCGCTGAG
CATGCTTTGAAGGGCATGGATATTTCGGTTGCACCAAATCAGGCTAGGAC
CAGGAAGCGAATGCCCAAGACTACGGCACGAGAATTATCTGTCTTAGAGA
GAGAAATAACGTCTAAGTTTAAACGCCCCTGTTACAACGCATTAGCAGAT
GCAGAGAGAGTGAAAATTGAGGTGTCCCTATCTCTTCTTCGGAGCTAAAA
GTTGCGAATAATCTAGTACTCCGGGGCTACCATTGGTCACAATTAGCATG
TTGCAACAAGCAGTGGACAGGGAGGTTTGTTTGTTTGACCTTGTAAAAGG
TTAGAACGTTGAAATGCCAAACATTGTGGTACGTGTTACATTTTTTTGTT
TTCACGTGAGCGTAAAGCCCAGTTAGTAACTCCTCACGAGCGCAGGGGTT
GCTCCTGCTCGTACCTGTACGTGTAAATAGGCTACAACGGTCATAAACAC
C

Coding sequence (CDS) from alignment at H-elongata_contig10024:2429..3679+

>mRNA_H-elongata_contig10024.30.1 ID=mRNA_H-elongata_contig10024.30.1|Name=mRNA_H-elongata_contig10024.30.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1992bp|location=Sequence derived from alignment at H-elongata_contig10024:2429..3679+ (Himanthalia elongata Himel1 dioecious)
ATGATCGACGTTGCGAGGAAGAGTTGTGCTAGCGATGGATGCTTCAAGCA
ATCGGTCTGTTGCGTGGCTGGCAATAGGAAGTCAGAATACTTTGCGGGGC
ATGCTATTGATGGGATGATCCCCGTTGGGGAAAGGTGTGGGAGTAATGAA
TCCTCTAAGCTTCCGACCTACGATGTCATAGGCAGCAGAAAACGTGAATA
CTGCGCGGTGCATGATTTGCAAGGGATGATCGGCGTTGTAAGCAAGACGT
GTGCTGGTAATGGATGCTCTAAACATCCGACTTACGGCGTGGCCGGCAGC
AAGAAACCAGAATACTGCGCGGTACATGCTTTGGAAGGAATGATCGACGT
TGCGATGAAGAGGTGTGATGGTGATATTAATCATCCGATTTATAGCGTTT
CCGACAACAAGATACATGAAAACTGTGCAGTACCTTCCTTGGAAGGGAGG
ATCGACTTAGCGAGCAAGAGTTGTGCTAAGGATGGATACTTTATGCGACT
AGCCTATGGCGTTGCAGGTAGCAAAGCGCCGGAGTCCTGCGTGGCGCATG
GGATGGCCGACGTTACTTATACGGGGTGCGCTAGCAATGGACGCTGTAAA
GGACCGGGCTATGGCGCGGTCGGTAGCATCAAACCGAAGTACTTTACCGG
CCATCCAGTGAATGGAATAATGGCCGTTGGGAAGTTGAATGCCGGCGATG
GCTTAACCGATTCCAATACGTTTTCCTACAGCAACGGATGCTGCAGGAGC
GCGAGCGACGATGTTGCCGTCGGCGCGATACAGGAGTATTTCGCTGAGCA
TGCTTTGAAGGGCATGGATATTTCGGTTGCACCAAATCAGGCTAGGACCA
GGAAGCGAATGCCCAAGACTACGGCACGAGAATTATCTGTCTTAGAGAGA
GAAATAACGTCTAAGTTTAAACGCCCCTGTTACAACGCATTAGCAGATGC
AGAGAGAGTGAAAATTGAGGTGTCCCTATCTCTTCTTCGGAGCTAAATGA
TCGACGTTGCGAGGAAGAGTTGTGCTAGCGATGGATGCTTCAAGCAATCG
GTCTGTTGCGTGGCTGGCAATAGGAAGTCAGAATACTTTGCGGGGCATGC
TATTGATGGGATGATCCCCGTTGGGGAAAGGTGTGGGAGTAATGAATCCT
CTAAGCTTCCGACCTACGATGTCATAGGCAGCAGAAAACGTGAATACTGC
GCGGTGCATGATTTGCAAGGGATGATCGGCGTTGTAAGCAAGACGTGTGC
TGGTAATGGATGCTCTAAACATCCGACTTACGGCGTGGCCGGCAGCAAGA
AACCAGAATACTGCGCGGTACATGCTTTGGAAGGAATGATCGACGTTGCG
ATGAAGAGGTGTGATGGTGATATTAATCATCCGATTTATAGCGTTTCCGA
CAACAAGATACATGAAAACTGTGCAGTACCTTCCTTGGAAGGGAGGATCG
ACTTAGCGAGCAAGAGTTGTGCTAAGGATGGATACTTTATGCGACTAGCC
TATGGCGTTGCAGGTAGCAAAGCGCCGGAGTCCTGCGTGGCGCATGGGAT
GGCCGACGTTACTTATACGGGGTGCGCTAGCAATGGACGCTGTAAAGGAC
CGGGCTATGGCGCGGTCGGTAGCATCAAACCGAAGTACTTTACCGGCCAT
CCAGTGAATGGAATAATGGCCGTTGGGAAGTTGAATGCCGGCGATGGCTT
AACCGATTCCAATACGTTTTCCTACAGCAACGGATGCTGCAGGAGCGCGA
GCGACGATGTTGCCGTCGGCGCGATACAGGAGTATTTCGCTGAGCATGCT
TTGAAGGGCATGGATATTTCGGTTGCACCAAATCAGGCTAGGACCAGGAA
GCGAATGCCCAAGACTACGGCACGAGAATTATCTGTCTTAGAGAGAGAAA
TAACGTCTAAGTTTAAACGCCCCTGTTACAACGCATTAGCAGATGCAGAG
AGAGTGAAAATTGAGGTGTCCCTATCTCTTCTTCGGAGCTAA