Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 1251 |
| Cds size | 996 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929544.992252-UTR-H-elongata_contig10024:2428..2430 | 1622929544.992252-UTR-H-elongata_contig10024:2428..2430 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10024 2429..2430 + |
| 1691679062.8443866-UTR-H-elongata_contig10024:2428..2430 | 1691679062.8443866-UTR-H-elongata_contig10024:2428..2430 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10024 2429..2430 + |
| 1622929545.0243845-UTR-H-elongata_contig10024:3426..3679 | 1622929545.0243845-UTR-H-elongata_contig10024:3426..3679 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10024 3427..3679 + |
| 1691679062.8892615-UTR-H-elongata_contig10024:3426..3679 | 1691679062.8892615-UTR-H-elongata_contig10024:3426..3679 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig10024 3427..3679 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929545.0100186-CDS-H-elongata_contig10024:2430..3426 | 1622929545.0100186-CDS-H-elongata_contig10024:2430..3426 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10024 2431..3426 + |
| 1691679062.873688-CDS-H-elongata_contig10024:2430..3426 | 1691679062.873688-CDS-H-elongata_contig10024:2430..3426 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig10024 2431..3426 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10024.30.1 >prot_H-elongata_contig10024.30.1 ID=prot_H-elongata_contig10024.30.1|Name=mRNA_H-elongata_contig10024.30.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=332bp
MIDVARKSCASDGCFKQSVCCVAGNRKSEYFAGHAIDGMIPVGERCGSNE
SSKLPTYDVIGSRKREYCAVHDLQGMIGVVSKTCAGNGCSKHPTYGVAGS
KKPEYCAVHALEGMIDVAMKRCDGDINHPIYSVSDNKIHENCAVPSLEGR
IDLASKSCAKDGYFMRLAYGVAGSKAPESCVAHGMADVTYTGCASNGRCK
GPGYGAVGSIKPKYFTGHPVNGIMAVGKLNAGDGLTDSNTFSYSNGCCRS
ASDDVAVGAIQEYFAEHALKGMDISVAPNQARTRKRMPKTTARELSVLER
EITSKFKRPCYNALADAERVKIEVSLSLLRS* back to topmRNA from alignment at H-elongata_contig10024:2429..3679+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig10024.30.1 ID=mRNA_H-elongata_contig10024.30.1|Name=mRNA_H-elongata_contig10024.30.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1251bp|location=Sequence derived from alignment at H-elongata_contig10024:2429..3679+ (Himanthalia elongata Himel1 dioecious)
GGATGATCGACGTTGCGAGGAAGAGTTGTGCTAGCGATGGATGCTTCAAG
CAATCGGTCTGTTGCGTGGCTGGCAATAGGAAGTCAGAATACTTTGCGGG
GCATGCTATTGATGGGATGATCCCCGTTGGGGAAAGGTGTGGGAGTAATG
AATCCTCTAAGCTTCCGACCTACGATGTCATAGGCAGCAGAAAACGTGAA
TACTGCGCGGTGCATGATTTGCAAGGGATGATCGGCGTTGTAAGCAAGAC
GTGTGCTGGTAATGGATGCTCTAAACATCCGACTTACGGCGTGGCCGGCA
GCAAGAAACCAGAATACTGCGCGGTACATGCTTTGGAAGGAATGATCGAC
GTTGCGATGAAGAGGTGTGATGGTGATATTAATCATCCGATTTATAGCGT
TTCCGACAACAAGATACATGAAAACTGTGCAGTACCTTCCTTGGAAGGGA
GGATCGACTTAGCGAGCAAGAGTTGTGCTAAGGATGGATACTTTATGCGA
CTAGCCTATGGCGTTGCAGGTAGCAAAGCGCCGGAGTCCTGCGTGGCGCA
TGGGATGGCCGACGTTACTTATACGGGGTGCGCTAGCAATGGACGCTGTA
AAGGACCGGGCTATGGCGCGGTCGGTAGCATCAAACCGAAGTACTTTACC
GGCCATCCAGTGAATGGAATAATGGCCGTTGGGAAGTTGAATGCCGGCGA
TGGCTTAACCGATTCCAATACGTTTTCCTACAGCAACGGATGCTGCAGGA
GCGCGAGCGACGATGTTGCCGTCGGCGCGATACAGGAGTATTTCGCTGAG
CATGCTTTGAAGGGCATGGATATTTCGGTTGCACCAAATCAGGCTAGGAC
CAGGAAGCGAATGCCCAAGACTACGGCACGAGAATTATCTGTCTTAGAGA
GAGAAATAACGTCTAAGTTTAAACGCCCCTGTTACAACGCATTAGCAGAT
GCAGAGAGAGTGAAAATTGAGGTGTCCCTATCTCTTCTTCGGAGCTAAAA
GTTGCGAATAATCTAGTACTCCGGGGCTACCATTGGTCACAATTAGCATG
TTGCAACAAGCAGTGGACAGGGAGGTTTGTTTGTTTGACCTTGTAAAAGG
TTAGAACGTTGAAATGCCAAACATTGTGGTACGTGTTACATTTTTTTGTT
TTCACGTGAGCGTAAAGCCCAGTTAGTAACTCCTCACGAGCGCAGGGGTT
GCTCCTGCTCGTACCTGTACGTGTAAATAGGCTACAACGGTCATAAACAC
C back to topCoding sequence (CDS) from alignment at H-elongata_contig10024:2429..3679+ >mRNA_H-elongata_contig10024.30.1 ID=mRNA_H-elongata_contig10024.30.1|Name=mRNA_H-elongata_contig10024.30.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1992bp|location=Sequence derived from alignment at H-elongata_contig10024:2429..3679+ (Himanthalia elongata Himel1 dioecious)
ATGATCGACGTTGCGAGGAAGAGTTGTGCTAGCGATGGATGCTTCAAGCA
ATCGGTCTGTTGCGTGGCTGGCAATAGGAAGTCAGAATACTTTGCGGGGC
ATGCTATTGATGGGATGATCCCCGTTGGGGAAAGGTGTGGGAGTAATGAA
TCCTCTAAGCTTCCGACCTACGATGTCATAGGCAGCAGAAAACGTGAATA
CTGCGCGGTGCATGATTTGCAAGGGATGATCGGCGTTGTAAGCAAGACGT
GTGCTGGTAATGGATGCTCTAAACATCCGACTTACGGCGTGGCCGGCAGC
AAGAAACCAGAATACTGCGCGGTACATGCTTTGGAAGGAATGATCGACGT
TGCGATGAAGAGGTGTGATGGTGATATTAATCATCCGATTTATAGCGTTT
CCGACAACAAGATACATGAAAACTGTGCAGTACCTTCCTTGGAAGGGAGG
ATCGACTTAGCGAGCAAGAGTTGTGCTAAGGATGGATACTTTATGCGACT
AGCCTATGGCGTTGCAGGTAGCAAAGCGCCGGAGTCCTGCGTGGCGCATG
GGATGGCCGACGTTACTTATACGGGGTGCGCTAGCAATGGACGCTGTAAA
GGACCGGGCTATGGCGCGGTCGGTAGCATCAAACCGAAGTACTTTACCGG
CCATCCAGTGAATGGAATAATGGCCGTTGGGAAGTTGAATGCCGGCGATG
GCTTAACCGATTCCAATACGTTTTCCTACAGCAACGGATGCTGCAGGAGC
GCGAGCGACGATGTTGCCGTCGGCGCGATACAGGAGTATTTCGCTGAGCA
TGCTTTGAAGGGCATGGATATTTCGGTTGCACCAAATCAGGCTAGGACCA
GGAAGCGAATGCCCAAGACTACGGCACGAGAATTATCTGTCTTAGAGAGA
GAAATAACGTCTAAGTTTAAACGCCCCTGTTACAACGCATTAGCAGATGC
AGAGAGAGTGAAAATTGAGGTGTCCCTATCTCTTCTTCGGAGCTAAATGA
TCGACGTTGCGAGGAAGAGTTGTGCTAGCGATGGATGCTTCAAGCAATCG
GTCTGTTGCGTGGCTGGCAATAGGAAGTCAGAATACTTTGCGGGGCATGC
TATTGATGGGATGATCCCCGTTGGGGAAAGGTGTGGGAGTAATGAATCCT
CTAAGCTTCCGACCTACGATGTCATAGGCAGCAGAAAACGTGAATACTGC
GCGGTGCATGATTTGCAAGGGATGATCGGCGTTGTAAGCAAGACGTGTGC
TGGTAATGGATGCTCTAAACATCCGACTTACGGCGTGGCCGGCAGCAAGA
AACCAGAATACTGCGCGGTACATGCTTTGGAAGGAATGATCGACGTTGCG
ATGAAGAGGTGTGATGGTGATATTAATCATCCGATTTATAGCGTTTCCGA
CAACAAGATACATGAAAACTGTGCAGTACCTTCCTTGGAAGGGAGGATCG
ACTTAGCGAGCAAGAGTTGTGCTAAGGATGGATACTTTATGCGACTAGCC
TATGGCGTTGCAGGTAGCAAAGCGCCGGAGTCCTGCGTGGCGCATGGGAT
GGCCGACGTTACTTATACGGGGTGCGCTAGCAATGGACGCTGTAAAGGAC
CGGGCTATGGCGCGGTCGGTAGCATCAAACCGAAGTACTTTACCGGCCAT
CCAGTGAATGGAATAATGGCCGTTGGGAAGTTGAATGCCGGCGATGGCTT
AACCGATTCCAATACGTTTTCCTACAGCAACGGATGCTGCAGGAGCGCGA
GCGACGATGTTGCCGTCGGCGCGATACAGGAGTATTTCGCTGAGCATGCT
TTGAAGGGCATGGATATTTCGGTTGCACCAAATCAGGCTAGGACCAGGAA
GCGAATGCCCAAGACTACGGCACGAGAATTATCTGTCTTAGAGAGAGAAA
TAACGTCTAAGTTTAAACGCCCCTGTTACAACGCATTAGCAGATGCAGAG
AGAGTGAAAATTGAGGTGTCCCTATCTCTTCTTCGGAGCTAA back to top
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