Homology
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match:
A0A6H5KH14_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH14_9PHAE)
HSP 1 Score: 124 bits (312), Expect = 1.300e-31
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1
Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
KH+D+PAGKAAVIWMVGEYGEEITEAPYMLEPLVD+WEEE S IKMHLLTAAVK+FFKRPPEMQ
Sbjct: 462 KHIDEPAGKAAVIWMVGEYGEEITEAPYMLEPLVDAWEEEPSCQIKMHLLTAAVKLFFKRPPEMQ 526
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match:
A0A835YU68_9STRA (Coatomer protein complex, beta sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU68_9STRA)
HSP 1 Score: 101 bits (251), Expect = 2.270e-23
Identity = 45/62 (72.58%), Postives = 57/62 (91.94%), Query Frame = 1
Query: 10 DDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
D+PAGKAA+IWMVGEYG EI EAPYMLEPL+D++EEE +V++K+ LLTAA+K+FF RPPE+Q
Sbjct: 479 DEPAGKAALIWMVGEYGAEIPEAPYMLEPLIDAYEEETNVEVKLQLLTAAMKLFFARPPEVQ 540
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match:
J3L227_ORYBR (Beta-adaptin-like protein n=20 Tax=BOP clade TaxID=359160 RepID=J3L227_ORYBR)
HSP 1 Score: 92.0 bits (227), Expect = 3.990e-20
Identity = 38/67 (56.72%), Postives = 56/67 (83.58%), Query Frame = 1
Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQVG 201
K++ +P GKAA+IWM+GEY +++ +APY+LE LV++WEEE S ++++HLLTA +K FFKRPPE Q+
Sbjct: 458 KNIQEPKGKAALIWMLGEYSQDMHDAPYILESLVENWEEEHSPEVRLHLLTAVMKCFFKRPPETQMA 524
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match:
A0A7S4D7F5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7F5_HETAK)
HSP 1 Score: 91.3 bits (225), Expect = 4.400e-20
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 1
Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
+ ++DP GKAAVIWMVGEYG E+ EAPYMLEPL+D +EEE S ++++ LL A K+FF+R PE+Q
Sbjct: 59 RRIEDPQGKAAVIWMVGEYGAELVEAPYMLEPLIDRYEEEPSGEVRLALLVATAKLFFQRAPEVQ 123
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match:
A0A1D6NI63_MAIZE (Beta-adaptin-like protein A n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6NI63_MAIZE)
HSP 1 Score: 89.7 bits (221), Expect = 5.050e-20
Identity = 37/65 (56.92%), Postives = 55/65 (84.62%), Query Frame = 1
Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
K++ +P GKAA+IWM+GEY +++ +APY+LE LV++W+EE S ++++HLLTA +K FFKRPPE Q
Sbjct: 127 KNIQEPKGKAALIWMLGEYSQDMHDAPYILENLVENWDEEHSPEVRLHLLTAVMKCFFKRPPETQ 191
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match:
W1NSC6_AMBTC (Beta-adaptin-like protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NSC6_AMBTC)
HSP 1 Score: 91.7 bits (226), Expect = 5.440e-20
Identity = 37/65 (56.92%), Postives = 54/65 (83.08%), Query Frame = 1
Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
+++ +P GKAA+IWM+GEY +++ +APY LE L+D+W+EE S ++++HLLTA VK FFKRPPE Q
Sbjct: 455 RNIQEPKGKAALIWMLGEYSQDMLDAPYTLESLIDNWDEEHSAEVRLHLLTAVVKCFFKRPPETQ 519
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match:
A0A3Q8CI37_9SPER (Beta-adaptin-like protein n=4 Tax=Cupressaceae TaxID=3367 RepID=A0A3Q8CI37_9SPER)
HSP 1 Score: 91.7 bits (226), Expect = 5.450e-20
Identity = 37/65 (56.92%), Postives = 54/65 (83.08%), Query Frame = 1
Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
K+V++P KAA++WM+GEY +++ +APY+LE L+DSW+EE S ++++HLLTA K FFKRPPE Q
Sbjct: 457 KNVEEPKAKAALVWMLGEYSQDMLDAPYILESLIDSWDEEDSAEVRLHLLTAVAKCFFKRPPETQ 521
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match:
A0A7C9EPF7_OPUST (B2-adapt-app_C domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EPF7_OPUST)
HSP 1 Score: 90.9 bits (224), Expect = 6.130e-20
Identity = 37/65 (56.92%), Postives = 54/65 (83.08%), Query Frame = 1
Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
K+V +P KAA+IWM+GEY +++ +APY+LE L+D+WEEE S ++++HLLTA +K FF+RPPE Q
Sbjct: 53 KNVQEPKAKAALIWMLGEYAQDMADAPYILESLIDNWEEEDSAEVRLHLLTATMKCFFRRPPETQ 117
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match:
A0A2P2J6K0_RHIMU (Beta-adaptin-like protein n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2J6K0_RHIMU)
HSP 1 Score: 91.3 bits (225), Expect = 7.430e-20
Identity = 37/65 (56.92%), Postives = 55/65 (84.62%), Query Frame = 1
Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
K+V +P KAA+IWM+GEY +E+T+APY+LE L+++W++E S ++++HLLTA +K FFKRPPE Q
Sbjct: 457 KNVQEPKAKAALIWMLGEYSQEMTDAPYVLESLIENWDDEHSAEVRLHLLTAVMKCFFKRPPETQ 521
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match:
A0A2I4GNU5_JUGRE (Beta-adaptin-like protein n=2 Tax=Juglans TaxID=16718 RepID=A0A2I4GNU5_JUGRE)
HSP 1 Score: 91.3 bits (225), Expect = 7.440e-20
Identity = 38/65 (58.46%), Postives = 54/65 (83.08%), Query Frame = 1
Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195
K+V +P KAA+IWM+GEY +++ +APY+LE L+D+WEEE S ++++HLLTA +K FFKRPPE Q
Sbjct: 457 KNVQEPKAKAALIWMLGEYSQDMHDAPYILESLIDNWEEEHSAEVRLHLLTAVMKCFFKRPPETQ 521
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 1.30e-31 / Id = 89.23 Expect = 2.27e-23 / Id = 72.58 Expect = 3.99e-20 / Id = 56.72 Expect = 4.40e-20 / Id = 61.54 Expect = 5.05e-20 / Id = 56.92 Expect = 5.44e-20 / Id = 56.92 Expect = 5.45e-20 / Id = 56.92 Expect = 6.13e-20 / Id = 56.92 Expect = 7.43e-20 / Id = 56.92 Expect = 7.44e-20 / Id = 58.46 Sequence A0A6H5KH14_9PHAE A0A835YU68_9STRA J3L227_ORYBR A0A7S4D7F5_HETAK A0A1D6NI63_MAIZE W1NSC6_AMBTC A0A3Q8CI37_9SPER A0A7C9EPF7_OPUST A0A2P2J6K0_RHIMU A0A2I4GNU5_JUGRE Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 124.8 Seed ortholog evalue 1.6e-26 Seed eggNOG ortholog 2880.D8LNY8 Preferred name AP4B1 KEGG ko ko:K12401 KEGG Pathway ko04142,map04142 GOs GO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019898,GO:0019899,GO:0019900,GO:0019901,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043424,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061938,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796 EggNOG free text desc. intracellular protein transport EggNOG OGs COG5096@1,KOG1061@2759 COG Functional cat. U Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko04131 Hectar predicted targeting category other localisation Exons 2 Model size 210 Cds size 210 Stop 1 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929544.4494014-CDS-H-elongata_contig100195:1346..1418 1622929544.4494014-CDS-H-elongata_contig100195:1346..1418 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100195 1347..1418 + 1691679062.591754-CDS-H-elongata_contig100195:1346..1418 1691679062.591754-CDS-H-elongata_contig100195:1346..1418 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100195 1347..1418 + 1622929544.4719665-CDS-H-elongata_contig100195:2029..2167 1622929544.4719665-CDS-H-elongata_contig100195:2029..2167 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100195 2030..2167 + 1691679062.6065211-CDS-H-elongata_contig100195:2029..2167 1691679062.6065211-CDS-H-elongata_contig100195:2029..2167 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100195 2030..2167 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100195.22.1
>prot_H-elongata_contig100195.22.1 ID=prot_H-elongata_contig100195.22.1|Name=mRNA_H-elongata_contig100195.22.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLL back to top mRNA from alignment at H-elongata_contig100195:1347..2167+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100195.22.1 ID=mRNA_H-elongata_contig100195.22.1|Name=mRNA_H-elongata_contig100195.22.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=821bp|location=Sequence derived from alignment at H-elongata_contig100195:1347..2167+ (Himanthalia elongata Himel1 dioecious)AAACACGTTGACGATCCAGCTGGCAAGGCAGCGGTTATCTGGATGGTCGG
AGAGTACGGAGAGGAGATCACG GTACGGCCCAGTCGATGTTTTCTCTCGT
GTTTAAAAACCTCTTGTAACACCTTTAGCAAAAAACGTTATTCACTTTAT
TTACATATGTGGGTGTGACTAGGGTTTGACGAGGGAGGGAGAGCGTGAAA
GGCGCTGTTCGTTCAAGGAGGGGGCTGCAGGGTCGTGCAGCCCCCCCTCT
GCCAGCGGCCAGCCAACCAAGTATCCCGTCTCTGGAAAAATAGGGAGACG
TTAAACGAAGATTTCGATCCCTCTGACGGTGTCCCCTACCCCTCCCCAGC
CGCGGCCACGAAATTCACAATCCTGTACTCTGGTGTACGATTGGAATATA
GAGTTGCATGCGAGTGCAACGTGCCATACGCGGTGTGAAGGTGTCCCTCG
TCCACCTATCTCCCGCCCGATGTGCCTCTCCTGTTTCCTGACCCCACCCC
TCCCTCTCAAGTGAACGCTAACGCTTTTCTCTATCACCCTAATCCCCTGT
CTCGTTCATGGTCCGCGCTCTTGTGTTTGGTGCCCTCCTTTTTTTCGTTG
TGTTTTTGTTTTTGTTTTTGTGCGGTCGTGATCTGGTGCCGTGTGTCGTC
GTGTGTCGCATTTGTGGTGTTGGAGGGGGACAGGAAGCCCCGTACATGCT
GGAGCCGCTGGTAGACTCCTGGGAGGAGGAAGCCTCGGTGGACATCAAGA
TGCACCTTCTCACCGCGGCAGTGAAGGTCTTCTTCAAGCGGCCCCCGGAG
ATGCAGGTGGGGCGCGCTTGA back to top Coding sequence (CDS) from alignment at H-elongata_contig100195:1347..2167+
>mRNA_H-elongata_contig100195.22.1 ID=mRNA_H-elongata_contig100195.22.1|Name=mRNA_H-elongata_contig100195.22.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig100195:1347..2167+ (Himanthalia elongata Himel1 dioecious) back to top