mRNA_H-elongata_contig100195.22.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A6H5KH14_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH14_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.300e-31 Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1 Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195 KH+D+PAGKAAVIWMVGEYGEEITEAPYMLEPLVD+WEEE S IKMHLLTAAVK+FFKRPPEMQ Sbjct: 462 KHIDEPAGKAAVIWMVGEYGEEITEAPYMLEPLVDAWEEEPSCQIKMHLLTAAVKLFFKRPPEMQ 526
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A835YU68_9STRA (Coatomer protein complex, beta sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU68_9STRA) HSP 1 Score: 101 bits (251), Expect = 2.270e-23 Identity = 45/62 (72.58%), Postives = 57/62 (91.94%), Query Frame = 1 Query: 10 DDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195 D+PAGKAA+IWMVGEYG EI EAPYMLEPL+D++EEE +V++K+ LLTAA+K+FF RPPE+Q Sbjct: 479 DEPAGKAALIWMVGEYGAEIPEAPYMLEPLIDAYEEETNVEVKLQLLTAAMKLFFARPPEVQ 540
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: J3L227_ORYBR (Beta-adaptin-like protein n=20 Tax=BOP clade TaxID=359160 RepID=J3L227_ORYBR) HSP 1 Score: 92.0 bits (227), Expect = 3.990e-20 Identity = 38/67 (56.72%), Postives = 56/67 (83.58%), Query Frame = 1 Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQVG 201 K++ +P GKAA+IWM+GEY +++ +APY+LE LV++WEEE S ++++HLLTA +K FFKRPPE Q+ Sbjct: 458 KNIQEPKGKAALIWMLGEYSQDMHDAPYILESLVENWEEEHSPEVRLHLLTAVMKCFFKRPPETQMA 524
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A7S4D7F5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7F5_HETAK) HSP 1 Score: 91.3 bits (225), Expect = 4.400e-20 Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 1 Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195 + ++DP GKAAVIWMVGEYG E+ EAPYMLEPL+D +EEE S ++++ LL A K+FF+R PE+Q Sbjct: 59 RRIEDPQGKAAVIWMVGEYGAELVEAPYMLEPLIDRYEEEPSGEVRLALLVATAKLFFQRAPEVQ 123
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A1D6NI63_MAIZE (Beta-adaptin-like protein A n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6NI63_MAIZE) HSP 1 Score: 89.7 bits (221), Expect = 5.050e-20 Identity = 37/65 (56.92%), Postives = 55/65 (84.62%), Query Frame = 1 Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195 K++ +P GKAA+IWM+GEY +++ +APY+LE LV++W+EE S ++++HLLTA +K FFKRPPE Q Sbjct: 127 KNIQEPKGKAALIWMLGEYSQDMHDAPYILENLVENWDEEHSPEVRLHLLTAVMKCFFKRPPETQ 191
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: W1NSC6_AMBTC (Beta-adaptin-like protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NSC6_AMBTC) HSP 1 Score: 91.7 bits (226), Expect = 5.440e-20 Identity = 37/65 (56.92%), Postives = 54/65 (83.08%), Query Frame = 1 Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195 +++ +P GKAA+IWM+GEY +++ +APY LE L+D+W+EE S ++++HLLTA VK FFKRPPE Q Sbjct: 455 RNIQEPKGKAALIWMLGEYSQDMLDAPYTLESLIDNWDEEHSAEVRLHLLTAVVKCFFKRPPETQ 519
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A3Q8CI37_9SPER (Beta-adaptin-like protein n=4 Tax=Cupressaceae TaxID=3367 RepID=A0A3Q8CI37_9SPER) HSP 1 Score: 91.7 bits (226), Expect = 5.450e-20 Identity = 37/65 (56.92%), Postives = 54/65 (83.08%), Query Frame = 1 Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195 K+V++P KAA++WM+GEY +++ +APY+LE L+DSW+EE S ++++HLLTA K FFKRPPE Q Sbjct: 457 KNVEEPKAKAALVWMLGEYSQDMLDAPYILESLIDSWDEEDSAEVRLHLLTAVAKCFFKRPPETQ 521
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A7C9EPF7_OPUST (B2-adapt-app_C domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EPF7_OPUST) HSP 1 Score: 90.9 bits (224), Expect = 6.130e-20 Identity = 37/65 (56.92%), Postives = 54/65 (83.08%), Query Frame = 1 Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195 K+V +P KAA+IWM+GEY +++ +APY+LE L+D+WEEE S ++++HLLTA +K FF+RPPE Q Sbjct: 53 KNVQEPKAKAALIWMLGEYAQDMADAPYILESLIDNWEEEDSAEVRLHLLTATMKCFFRRPPETQ 117
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A2P2J6K0_RHIMU (Beta-adaptin-like protein n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2J6K0_RHIMU) HSP 1 Score: 91.3 bits (225), Expect = 7.430e-20 Identity = 37/65 (56.92%), Postives = 55/65 (84.62%), Query Frame = 1 Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195 K+V +P KAA+IWM+GEY +E+T+APY+LE L+++W++E S ++++HLLTA +K FFKRPPE Q Sbjct: 457 KNVQEPKAKAALIWMLGEYSQEMTDAPYVLESLIENWDDEHSAEVRLHLLTAVMKCFFKRPPETQ 521
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Match: A0A2I4GNU5_JUGRE (Beta-adaptin-like protein n=2 Tax=Juglans TaxID=16718 RepID=A0A2I4GNU5_JUGRE) HSP 1 Score: 91.3 bits (225), Expect = 7.440e-20 Identity = 38/65 (58.46%), Postives = 54/65 (83.08%), Query Frame = 1 Query: 1 KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLTAAVKVFFKRPPEMQ 195 K+V +P KAA+IWM+GEY +++ +APY+LE L+D+WEEE S ++++HLLTA +K FFKRPPE Q Sbjct: 457 KNVQEPKAKAALIWMLGEYSQDMHDAPYILESLIDNWEEEHSAEVRLHLLTAVMKCFFKRPPETQ 521 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100195.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100195.22.1 >prot_H-elongata_contig100195.22.1 ID=prot_H-elongata_contig100195.22.1|Name=mRNA_H-elongata_contig100195.22.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp KHVDDPAGKAAVIWMVGEYGEEITEAPYMLEPLVDSWEEEASVDIKMHLLback to top mRNA from alignment at H-elongata_contig100195:1347..2167+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100195.22.1 ID=mRNA_H-elongata_contig100195.22.1|Name=mRNA_H-elongata_contig100195.22.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=821bp|location=Sequence derived from alignment at H-elongata_contig100195:1347..2167+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100195:1347..2167+ >mRNA_H-elongata_contig100195.22.1 ID=mRNA_H-elongata_contig100195.22.1|Name=mRNA_H-elongata_contig100195.22.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig100195:1347..2167+ (Himanthalia elongata Himel1 dioecious)back to top |