Homology
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match:
A0A6H5KH14_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH14_9PHAE)
HSP 1 Score: 117 bits (292), Expect = 8.060e-29
Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 1
Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
RYNEPTGVKYAKVRCLALLAD TA+A+IAELGEYA D+D LARQA+RAVGKIC RLP SAAAAIERLIDLM
Sbjct: 352 RYNEPTGVKYAKVRCLALLADSTTAEAIIAELGEYAGDMDHLLARQAMRAVGKICLRLPGSAAAAIERLIDLM 424
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match:
A0A4D9CWN1_9STRA (B2-adapt-app_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWN1_9STRA)
HSP 1 Score: 79.0 bits (193), Expect = 1.960e-15
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 1
Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
RYNEPT VKY K+ LA++A+ T ++AEL EYA D+D E++R++IRA+G I FRLP +A +ERL+ +
Sbjct: 349 RYNEPTFVKYEKIDILAIIANEETVGDIVAELAEYATDVDQEVSRRSIRAIGNIAFRLPSAAGMILERLVGFL 421
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match:
A0A7S3SC85_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SC85_9SPIT)
HSP 1 Score: 70.9 bits (172), Expect = 9.930e-13
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
RYNEP+ +K K+ L LAD N+A+ +I EL EY D+D E++R+AIRA+GKI R+P +A + L +L+
Sbjct: 19 RYNEPSYIKQVKIDILTALADSNSAEHIIGELSEYVTDVDAEISRRAIRAIGKIAVRVPSTAELIVGSLTNLL 91
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match:
A0A7S4RGM6_9DINO (AP complex subunit beta n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RGM6_9DINO)
HSP 1 Score: 71.2 bits (173), Expect = 1.000e-12
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
RYNEP+ +K K+ L +LAD +A+ V++EL EY D+D E++R+AIRA+GKI R+P +A + L L+
Sbjct: 335 RYNEPSYIKTVKIEILTMLADAGSAEPVVSELSEYVTDVDAEISRRAIRAIGKIAVRVPSTAEMIVGSLTSLL 407
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match:
A0A7S1KWR4_ALECA (AP complex subunit beta n=2 Tax=Dinophyceae TaxID=2864 RepID=A0A7S1KWR4_ALECA)
HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
RYNEP+ +K K+ L LAD+ +A+ ++AEL EY D+D E++R+AIRA+GKI R+P +A + L L+
Sbjct: 399 RYNEPSYIKTVKIEILTWLADIGSAEPIVAELSEYVTDVDVEISRRAIRAIGKIAVRVPSTAELIVGSLTSLL 471
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match:
A0A812W4F6_9DINO (BETAA-AD protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812W4F6_9DINO)
HSP 1 Score: 70.5 bits (171), Expect = 1.830e-12
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
RYNEP+ +K K+ L +LAD N+A+ V+ EL EY D+D E+AR+AIRA+GKI +P ++ + L L+
Sbjct: 420 RYNEPSYIKQVKIDILTMLADFNSAEHVVTELSEYVTDVDAEIARRAIRAIGKIAVHVPSTSEMIVTSLTSLL 492
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match:
A0A813AIR6_SYMMI (DnaK protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813AIR6_SYMMI)
HSP 1 Score: 70.5 bits (171), Expect = 1.910e-12
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
RYNEP+ +K K+ L +LAD N+A+ V+ EL EY D+D E+AR+AIRA+GKI +P ++ + L L+
Sbjct: 1665 RYNEPSYIKQVKIDILTMLADFNSAEHVVTELSEYVTDVDAEIARRAIRAIGKIAVHVPSTSEMIVTSLTSLL 1737
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match:
A0A812LET1_9DINO (BETAA-AD protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812LET1_9DINO)
HSP 1 Score: 70.1 bits (170), Expect = 2.510e-12
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
RYNEP+ +K K+ L +LAD N+A+ V+ EL EY D+D E+AR+AIRA+GKI +P ++ + L L+
Sbjct: 16 RYNEPSYIKQVKIDILTMLADFNSAEHVVTELSEYVTDVDAEIARRAIRAIGKIAVHVPSTSEMIVTSLTGLL 88
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match:
A0A812INE5_SYMPI (ApdG protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812INE5_SYMPI)
HSP 1 Score: 69.7 bits (169), Expect = 3.500e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225
RYNEP+ +K K+ L +LAD N+A+ V+ EL EY D+D E+AR+AI+A+GKI +P ++ + L +L+
Sbjct: 633 RYNEPSYIKQVKIDILTMLADFNSAEHVVTELSEYVTDVDAEIARRAIQAIGKIAVHVPSTSEMIVSSLTNLL 705
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match:
A0A7S1C8U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8U9_9STRA)
HSP 1 Score: 68.6 bits (166), Expect = 8.840e-12
Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDL 222
RYN+PT +K+ K+ L +A+ + A ++AEL EY D+D E+AR AIRA+G++ R+PE+ IE L++L
Sbjct: 329 RYNDPTPMKHLKLEVLPQVANADNAGEIVAELSEYVSDVDAEMARHAIRAIGQLVVRVPEAGGRVIETLLEL 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 8.06e-29 / Id = 84.93 Expect = 1.96e-15 / Id = 50.68 Expect = 9.93e-13 / Id = 46.58 Expect = 1.00e-12 / Id = 45.21 Expect = 1.01e-12 / Id = 45.21 Expect = 1.83e-12 / Id = 45.21 Expect = 1.91e-12 / Id = 45.21 Expect = 2.51e-12 / Id = 45.21 Expect = 3.50e-12 / Id = 43.84 Expect = 8.84e-12 / Id = 44.44 Sequence A0A6H5KH14_9PHAE A0A4D9CWN1_9STRA A0A7S3SC85_9SPIT A0A7S4RGM6_9DINO A0A7S1KWR4_ALECA A0A812W4F6_9DINO A0A813AIR6_SYMMI A0A812LET1_9DINO A0A812INE5_SYMPI A0A7S1C8U9_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 122.5 Seed ortholog evalue 8.5e-26 Seed eggNOG ortholog 2880.D8LNY8 Preferred name AP4B1 KEGG ko ko:K12401 KEGG Pathway ko04142,map04142 GOs GO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019898,GO:0019899,GO:0019900,GO:0019901,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043424,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061938,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796 EggNOG free text desc. intracellular protein transport EggNOG OGs COG5096@1,KOG1061@2759 Ec32 ortholog description Coatomer protein complex, beta sub-unit Ec32 ortholog Ec-14_005780.1 COG Functional cat. U Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko04131 Hectar predicted targeting category other localisation Exons 1 Model size 225 Cds size 225 Stop 0 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929544.393842-CDS-H-elongata_contig100195:111..336 1622929544.393842-CDS-H-elongata_contig100195:111..336 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100195 112..336 + 1691679062.576255-CDS-H-elongata_contig100195:111..336 1691679062.576255-CDS-H-elongata_contig100195:111..336 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100195 112..336 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100195.21.1
>prot_H-elongata_contig100195.21.1 ID=prot_H-elongata_contig100195.21.1|Name=mRNA_H-elongata_contig100195.21.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MFRYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAI back to top mRNA from alignment at H-elongata_contig100195:112..336+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100195.21.1 ID=mRNA_H-elongata_contig100195.21.1|Name=mRNA_H-elongata_contig100195.21.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig100195:112..336+ (Himanthalia elongata Himel1 dioecious)ATGTTCAGGTACAACGAACCGACGGGTGTGAAGTACGCGAAGGTTCGCTG
TCTCGCCTTGCTCGCCGACGTGAACACGGCGCAAGCCGTCATCGCGGAGC
TCGGGGAGTACGCCGTCGATATCGACCCGGAGCTGGCGAGGCAAGCCATC
CGGGCCGTGGGCAAGATTTGCTTCAGGCTTCCGGAATCGGCTGCGGCCGC
CATCGAGCGGCTAATCGACTTGATG back to top Coding sequence (CDS) from alignment at H-elongata_contig100195:112..336+
>mRNA_H-elongata_contig100195.21.1 ID=mRNA_H-elongata_contig100195.21.1|Name=mRNA_H-elongata_contig100195.21.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig100195:112..336+ (Himanthalia elongata Himel1 dioecious) back to top