mRNA_H-elongata_contig100195.21.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A6H5KH14_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH14_9PHAE) HSP 1 Score: 117 bits (292), Expect = 8.060e-29 Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 1 Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225 RYNEPTGVKYAKVRCLALLAD TA+A+IAELGEYA D+D LARQA+RAVGKIC RLP SAAAAIERLIDLM Sbjct: 352 RYNEPTGVKYAKVRCLALLADSTTAEAIIAELGEYAGDMDHLLARQAMRAVGKICLRLPGSAAAAIERLIDLM 424
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A4D9CWN1_9STRA (B2-adapt-app_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWN1_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.960e-15 Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 1 Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225 RYNEPT VKY K+ LA++A+ T ++AEL EYA D+D E++R++IRA+G I FRLP +A +ERL+ + Sbjct: 349 RYNEPTFVKYEKIDILAIIANEETVGDIVAELAEYATDVDQEVSRRSIRAIGNIAFRLPSAAGMILERLVGFL 421
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A7S3SC85_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SC85_9SPIT) HSP 1 Score: 70.9 bits (172), Expect = 9.930e-13 Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225 RYNEP+ +K K+ L LAD N+A+ +I EL EY D+D E++R+AIRA+GKI R+P +A + L +L+ Sbjct: 19 RYNEPSYIKQVKIDILTALADSNSAEHIIGELSEYVTDVDAEISRRAIRAIGKIAVRVPSTAELIVGSLTNLL 91
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A7S4RGM6_9DINO (AP complex subunit beta n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RGM6_9DINO) HSP 1 Score: 71.2 bits (173), Expect = 1.000e-12 Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225 RYNEP+ +K K+ L +LAD +A+ V++EL EY D+D E++R+AIRA+GKI R+P +A + L L+ Sbjct: 335 RYNEPSYIKTVKIEILTMLADAGSAEPVVSELSEYVTDVDAEISRRAIRAIGKIAVRVPSTAEMIVGSLTSLL 407
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A7S1KWR4_ALECA (AP complex subunit beta n=2 Tax=Dinophyceae TaxID=2864 RepID=A0A7S1KWR4_ALECA) HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12 Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225 RYNEP+ +K K+ L LAD+ +A+ ++AEL EY D+D E++R+AIRA+GKI R+P +A + L L+ Sbjct: 399 RYNEPSYIKTVKIEILTWLADIGSAEPIVAELSEYVTDVDVEISRRAIRAIGKIAVRVPSTAELIVGSLTSLL 471
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A812W4F6_9DINO (BETAA-AD protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812W4F6_9DINO) HSP 1 Score: 70.5 bits (171), Expect = 1.830e-12 Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1 Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225 RYNEP+ +K K+ L +LAD N+A+ V+ EL EY D+D E+AR+AIRA+GKI +P ++ + L L+ Sbjct: 420 RYNEPSYIKQVKIDILTMLADFNSAEHVVTELSEYVTDVDAEIARRAIRAIGKIAVHVPSTSEMIVTSLTSLL 492
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A813AIR6_SYMMI (DnaK protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813AIR6_SYMMI) HSP 1 Score: 70.5 bits (171), Expect = 1.910e-12 Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1 Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225 RYNEP+ +K K+ L +LAD N+A+ V+ EL EY D+D E+AR+AIRA+GKI +P ++ + L L+ Sbjct: 1665 RYNEPSYIKQVKIDILTMLADFNSAEHVVTELSEYVTDVDAEIARRAIRAIGKIAVHVPSTSEMIVTSLTSLL 1737
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A812LET1_9DINO (BETAA-AD protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812LET1_9DINO) HSP 1 Score: 70.1 bits (170), Expect = 2.510e-12 Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1 Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225 RYNEP+ +K K+ L +LAD N+A+ V+ EL EY D+D E+AR+AIRA+GKI +P ++ + L L+ Sbjct: 16 RYNEPSYIKQVKIDILTMLADFNSAEHVVTELSEYVTDVDAEIARRAIRAIGKIAVHVPSTSEMIVTSLTGLL 88
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A812INE5_SYMPI (ApdG protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812INE5_SYMPI) HSP 1 Score: 69.7 bits (169), Expect = 3.500e-12 Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDLM 225 RYNEP+ +K K+ L +LAD N+A+ V+ EL EY D+D E+AR+AI+A+GKI +P ++ + L +L+ Sbjct: 633 RYNEPSYIKQVKIDILTMLADFNSAEHVVTELSEYVTDVDAEIARRAIQAIGKIAVHVPSTSEMIVSSLTNLL 705
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Match: A0A7S1C8U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8U9_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 8.840e-12 Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = 1 Query: 7 RYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIRAVGKICFRLPESAAAAIERLIDL 222 RYN+PT +K+ K+ L +A+ + A ++AEL EY D+D E+AR AIRA+G++ R+PE+ IE L++L Sbjct: 329 RYNDPTPMKHLKLEVLPQVANADNAGEIVAELSEYVSDVDAEMARHAIRAIGQLVVRVPEAGGRVIETLLEL 400 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100195.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100195.21.1 >prot_H-elongata_contig100195.21.1 ID=prot_H-elongata_contig100195.21.1|Name=mRNA_H-elongata_contig100195.21.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp MFRYNEPTGVKYAKVRCLALLADVNTAQAVIAELGEYAVDIDPELARQAIback to top mRNA from alignment at H-elongata_contig100195:112..336+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100195.21.1 ID=mRNA_H-elongata_contig100195.21.1|Name=mRNA_H-elongata_contig100195.21.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig100195:112..336+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100195:112..336+ >mRNA_H-elongata_contig100195.21.1 ID=mRNA_H-elongata_contig100195.21.1|Name=mRNA_H-elongata_contig100195.21.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig100195:112..336+ (Himanthalia elongata Himel1 dioecious)back to top |