Homology
BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Match:
A0A6H5JAQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAQ4_9PHAE)
HSP 1 Score: 249 bits (635), Expect = 6.830e-78
Identity = 143/276 (51.81%), Postives = 174/276 (63.04%), Query Frame = 1
Query: 25 GHAVTPGKIYTCELTSSLTGCMSCLGTVKNITNTCTTCCTVEGDSECRTLESDWEFYASTIFFVFLCCCFSVLCGLTEVRRKKKGISFAQAWSVPQAMPILRTWPGRSVSASDIMSVGGGAEGDDHHQHWQPLSD-EEDLKHYPVAGLIDDSGVAFGFVAAMPQSLLGTGTNSSGRPGPATMHLPPTPQEPELTVWISRERNSTMNRRAARPHSIASTALIEGTHEGGGNVGSSEGRVCRVDAELEGGRTS---VVDSGLEEPLVVSG--TGPGRG 834
GH +PGK+YTC S ++ CMSCL +C TCC++E + +C ++S+W+FYAST+FF+ LCCCF+ LCGLTEVRRKKKGISFAQAWSVPQAMPILRTWP RS S+SD MS GG G W LSD EEDLK YPVAGL+DDSG+AFGFV +PQ+LL + S + G + PP+PQEPELTVWISR+ N + A I + N R GGR VV + LEEPL++ G TGPGRG
Sbjct: 43 GHLASPGKLYTCIDVSEVSSCMSCLRNADYSDVSCDTCCSIE-NLDCTKVDSEWDFYASTLFFICLCCCFTALCGLTEVRRKKKGISFAQAWSVPQAMPILRTWPRRSASSSD-MSQAGGEVG----TQWAALSDDEEDLKRYPVAGLVDDSGMAFGFVTTLPQTLLSSVATSLRQAGSPS---PPSPQEPELTVWISRD-NEGASASAPAHRGIGGGSGASAVTGVEANSSEESSRGSSGATRAAGGRQQRAVVVGNDLEEPLMLDGVGTGPGRG 308
BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Match:
D7FJE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE0_ECTSI)
HSP 1 Score: 59.7 bits (143), Expect = 1.200e-6
Identity = 69/223 (30.94%), Postives = 94/223 (42.15%), Query Frame = 1
Query: 85 CMSCLGTVKNITNTCTTCCTVEGDSECRTLESDWEFYASTIFF--VFLCCCFSVLCGLTEVRRKKKGISFAQAWSVPQAMPILRT---------------WP-----GRSVSASDIMSVGGGAEGDDHHQHWQPLSDEEDLKHYPVAGLIDDSGV-AFGFVAAMPQ---------SLLGTGTNSSGRPGPATMHLPPTPQEPELTVW-ISRERNSTMNRRAAR 654
C+SC+ + + T C CC ++EC LE W +T+ VF C S + L E RRK+KGIS A+AWS+PQ MP+LR W G V D++ G E + + L + D PVA L +D+ V A F P S T ++S R G P QE E W +SR R++ R AR
Sbjct: 11 CVSCIPSRSSSTK-CAYCCGTP-NAECD-LEWSWGAVLATLSVSAVFATC--SGILALAEKRRKRKGISLARAWSIPQGMPVLRATVTDLSDAVRGRASIWSAEGLNGADVGDDDLLEHVGLLEEIPNDSIYGALVQQRD-SDIPVAKLAEDNWVTAMAFAGGQPNPDSDPVTYGSTSTTTASTSRREGAG-----PEGQEEEEHTWSVSRWRSARATARQAR 222
BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Match:
A0A6H5L5L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L4_9PHAE)
HSP 1 Score: 56.2 bits (134), Expect = 2.390e-5
Identity = 40/100 (40.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query: 43 GKIYTCELTSS--LTGCMSCLGTVKNITNTCTTCCTVEGDSECRTLESDWEFYASTIFF--VFLCCCFSVLCGLTEVRRKKKGISFAQAWSVPQAMPILR 330
G+ Y C S C+SC+ + + T C CC ++EC LE W +T+ VF C S + L E RRK+KGIS A+AWS+PQ MP+LR
Sbjct: 86 GERYYCMHVESPQTRACVSCIPSRSSSTK-CAYCCGTP-NAECD-LEWSWGAVLATLSVSAVFATC--SGILALAEKRRKRKGISLARAWSIPQGMPVLR 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 6.83e-78 / Id = 51.81 Expect = 1.20e-6 / Id = 30.94 Expect = 2.39e-5 / Id = 40.00 Sequence A0A6H5JAQ4_9PHAE D7FJE0_ECTSI A0A6H5L5L4_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 2 Model size 876 Cds size 876 Stop 0 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929544.1316214-CDS-H-elongata_contig100165:1201..1317 1622929544.1316214-CDS-H-elongata_contig100165:1201..1317 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100165 1202..1317 + 1691679062.4753754-CDS-H-elongata_contig100165:1201..1317 1691679062.4753754-CDS-H-elongata_contig100165:1201..1317 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100165 1202..1317 + 1622929544.1504464-CDS-H-elongata_contig100165:1615..2375 1622929544.1504464-CDS-H-elongata_contig100165:1615..2375 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100165 1616..2375 + 1691679062.4865193-CDS-H-elongata_contig100165:1615..2375 1691679062.4865193-CDS-H-elongata_contig100165:1615..2375 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100165 1616..2375 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100165.18.1
>prot_H-elongata_contig100165.18.1 ID=prot_H-elongata_contig100165.18.1|Name=mRNA_H-elongata_contig100165.18.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=292bp
MVQFVSRAGHAVTPGKIYTCELTSSLTGCMSCLGTVKNITNTCTTCCTVE back to top mRNA from alignment at H-elongata_contig100165:1202..2375+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100165.18.1 ID=mRNA_H-elongata_contig100165.18.1|Name=mRNA_H-elongata_contig100165.18.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1174bp|location=Sequence derived from alignment at H-elongata_contig100165:1202..2375+ (Himanthalia elongata Himel1 dioecious)ATGGTGCAATTCGTGAGCAGAGCGGGGCACGCGGTTACTCCGGGCAAGAT
TTACACATGCGAACTTACGTCGAGCTTGACTGGGTGCATGAGCTGTCTAG
GGACGGTCAAGAACAT GTACGTATGGCGTTCAGTGAAATACGTAACGGTA
TCTTCCATAAAAATACATAACCGCATCTATGATATCTGCTCACTTGCAAT
GAGCTCTTGCAGGCGACCAAATATCGCCCTATATTTGCTGCACTGAACTC
TTAGATACATTCATACCTGAGTGCGCGGGTTTGCCTTCAGCGCAGCAAAT
CGTAATGCTTCTATGTTTCCACCCTGTTTTCTGGCGTCCTCCGGTCTTCT
GGTCCTCTCTTGAATGACTCCGATGATGATGATGATGGCTCTGCTCGGCT
GGCTCCTTCCGCAGCACCAACACGTGTACGACCTGCTGCACGGTGGAGGG
GGACTCGGAATGTCGAACCCTGGAGTCGGACTGGGAGTTCTACGCGTCGA
CTATTTTTTTCGTGTTCCTCTGCTGTTGTTTCTCCGTGCTGTGCGGCCTC
ACTGAAGTCAGGCGGAAAAAGAAGGGAATCTCGTTTGCGCAAGCGTGGTC
CGTACCCCAAGCGATGCCCATCCTTCGCACTTGGCCCGGACGATCCGTGT
CGGCGTCAGATATTATGTCAGTAGGGGGTGGGGCGGAGGGCGATGATCAC
CATCAGCATTGGCAACCGCTGTCCGACGAGGAGGATCTAAAGCACTACCC
CGTGGCTGGGTTGATCGACGACTCTGGCGTGGCGTTTGGCTTCGTCGCGG
CCATGCCGCAATCGCTTCTGGGGACAGGGACTAACTCTTCGGGACGCCCG
GGGCCAGCCACGATGCATCTGCCGCCCACACCCCAGGAGCCAGAGCTGAC
GGTGTGGATATCGAGAGAAAGAAATTCCACCATGAATAGGAGGGCGGCAC
GTCCTCACAGTATCGCCAGCACGGCCTTGATTGAAGGGACTCACGAGGGC
GGTGGCAATGTCGGCAGTAGCGAAGGTAGGGTATGTAGGGTAGATGCTGA
GCTGGAAGGAGGGAGAACTTCAGTGGTCGACAGCGGTCTGGAAGAACCTC
TTGTTGTGAGCGGGACCGGACCTGGTAGAGGAGTCGAGGGCGAAAGTGGC
GCTGGCAGGAATACGAGTAGAGGT back to top Coding sequence (CDS) from alignment at H-elongata_contig100165:1202..2375+
>mRNA_H-elongata_contig100165.18.1 ID=mRNA_H-elongata_contig100165.18.1|Name=mRNA_H-elongata_contig100165.18.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at H-elongata_contig100165:1202..2375+ (Himanthalia elongata Himel1 dioecious) back to top