Homology
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match:
D8LSW9_ECTSI (Peptidyl-tRNA hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW9_ECTSI)
HSP 1 Score: 182 bits (462), Expect = 2.610e-54
Identity = 89/115 (77.39%), Postives = 104/115 (90.43%), Query Frame = 1
Query: 1 VVDFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFN 345
V+DFFKLP+NAA++LVDEVALDFGQLRLKGKGG GGHNGLKS+QAHLKTP+YTRLRIG+G K + LSD+VLGEFTR+EK+ELD+VIA+ACDAVE W+EEED+ KVMTRFN
Sbjct: 61 VMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEA---LSDHVLGEFTRTEKKELDNVIADACDAVEHWVEEEDMAKVMTRFN 172
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match:
A0A6H5JIA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA6_9PHAE)
HSP 1 Score: 182 bits (463), Expect = 4.230e-52
Identity = 90/115 (78.26%), Postives = 104/115 (90.43%), Query Frame = 1
Query: 1 VVDFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFN 345
V+DFFKLP+NAA++LVDEVALDFGQLRLKGKGG GGHNGLKS+QAHLKTP+YTRLRIG+G K + LSD+VLGEFTR+EK+ELD+VIA+ACDAVE WIEEED+ KVMTRFN
Sbjct: 250 VMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEA---LSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMTRFN 361
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match:
A0A4D9CWV7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV7_9STRA)
HSP 1 Score: 135 bits (340), Expect = 2.550e-32
Identity = 62/115 (53.91%), Postives = 89/115 (77.39%), Query Frame = 1
Query: 1 VVDFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFN 345
V+D+FKLP+++ +++VDEVALD GQ+RL+ G GGHNGLKSI++ LK DY RLRIG+GG PG + D+VLG+F+RSE++ LD ++ +A +A+E WIE+++ DKVM R N
Sbjct: 821 VLDYFKLPVSSVLVVVDEVALDIGQIRLRQTGSAGGHNGLKSIESCLKCKDYNRLRIGVGG----AAPGSMVDHVLGQFSRSERKVLDDMLIDAVEAIEDWIEDDNTDKVMNRVN 931
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match:
A0A836CKJ3_9STRA (Peptidyl-tRNA hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKJ3_9STRA)
HSP 1 Score: 125 bits (313), Expect = 5.930e-32
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 1
Query: 1 VVDFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFNGR 351
V DFFKL + ++L D+VALDFG LRL+ KG GGHNGLKS+Q HL T DY RLRIG+G ++ L +VLGEF++ E++ELD V+++A VE WI E+D VMT NG+
Sbjct: 61 VTDFFKLNADHVLVLTDDVALDFGALRLRMKGSAGGHNGLKSLQQHLGTQDYARLRIGVGAPRK-----DLVSHVLGEFSKVERKELDMVVSDAASVVEHWIAEDDAALVMTAINGK 172
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match:
A0A7V4KMS0_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7V4KMS0_9BACT)
HSP 1 Score: 115 bits (287), Expect = 6.480e-28
Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = 1
Query: 22 PINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFN 345
P + ++LVD+VAL G RL+G G PGGHNGLKSI+A L+ DY RLRIG+G G L+D+VLGEF+R+E+R L+ + DA ECW+EE I+K M+RFN
Sbjct: 83 PASELLVLVDDVALPLGTFRLRGAGSPGGHNGLKSIEATLRRRDYARLRIGVGPVP--AGVDDLADFVLGEFSRAERRTLEDQLDRMADACECWVEE-GIEKAMSRFN 187
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match:
A0A6M1YZS9_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1YZS9_9BACT)
HSP 1 Score: 114 bits (284), Expect = 2.110e-27
Identity = 51/102 (50.00%), Postives = 76/102 (74.51%), Query Frame = 1
Query: 7 DFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEE 312
D++K+P++ +++ D+VAL FGQLR++ KG PGGHNGLKS+QA+L T +YTRLR+G+G + + G LSDYVLG+FT E++ L V+ + A+E W+ E
Sbjct: 83 DYYKVPMSQLIVVTDDVALPFGQLRIRQKGSPGGHNGLKSVQAYLGTEEYTRLRVGVGDQSK----GELSDYVLGKFTAEEQQLLPDVVDRSTRAIELWLTE 180
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match:
A0A2V5MGH1_9BACT (Aminoacyl-tRNA hydrolase (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5MGH1_9BACT)
HSP 1 Score: 112 bits (281), Expect = 3.000e-27
Identity = 52/118 (44.07%), Postives = 79/118 (66.95%), Query Frame = 1
Query: 7 DFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACG---PGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFNGR 351
+F+++ ++++D+ L FG++R++ +G GGH+GL+SI+AHL T Y RLRIGIG E ACG P +S YVL F ++ L+ V+ ACD VECW++E + K M+R+NGR
Sbjct: 48 NFYRVARERLLVVMDDADLPFGEIRMRAEGSSGGHHGLESIEAHLGTRQYARLRIGIGREALACGQHAPREISGYVLAPFRAADAELLEKVLTRACDQVECWLDE-GVGKAMSRYNGR 164
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match:
A0A7X0LLG6_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0LLG6_9BACT)
HSP 1 Score: 113 bits (282), Expect = 3.280e-27
Identity = 56/113 (49.56%), Postives = 75/113 (66.37%), Query Frame = 1
Query: 10 FFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFNG 348
F+KL +ILVDE+ALD GQ+RL+ G PGGHNGLK ++ L T DY RLR+GIG RA P D+VLG FT + E++ + +ACD +E W+E+ I+ MT+FNG
Sbjct: 78 FYKLEPEDILILVDEIALDVGQIRLRASGSPGGHNGLKDLERALGTRDYPRLRLGIGPRTRA----PQVDFVLGRFTGEQLDEMNFTLGKACDCIESWLED-GIELAMTKFNG 185
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match:
A0A7X5Q305_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A7X5Q305_9BACT)
HSP 1 Score: 110 bits (274), Expect = 5.250e-26
Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 7 DFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEE 312
D++K+PI +++ D+VAL FGQLRL+ +G GGHNGL+SI+AHL T +Y+RLRIG+ + G L+DYVL +F++ E+R L V+A A +A+E W+ E
Sbjct: 80 DYYKIPIERVIVVTDDVALPFGQLRLRAQGSCGGHNGLRSIEAHLGTQEYSRLRIGVSNREE----GDLADYVLSKFSQEEQRALPDVVASAIEALELWLTE 177
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match:
A0A7W1VQY8_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1VQY8_9BACT)
HSP 1 Score: 107 bits (267), Expect = 7.660e-25
Identity = 52/114 (45.61%), Postives = 75/114 (65.79%), Query Frame = 1
Query: 7 DFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFNG 348
+F+K+P ++LVD+ L GQ+RL+GKG GGH+G+ SI+ HL T D+ RLRIGIG ++ +++YVLG+F E L V+ A D VE W++E I+K MT+FNG
Sbjct: 81 EFYKVPPKRVLVLVDDADLPLGQIRLRGKGSSGGHHGIDSIEQHLGTQDFPRLRIGIG--RKQSNVREITNYVLGQFGADENELLGKVLTRASDQVESWLDE-GIEKAMTKFNG 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 2.61e-54 / Id = 77.39 Expect = 4.23e-52 / Id = 78.26 Expect = 2.55e-32 / Id = 53.91 Expect = 5.93e-32 / Id = 52.99 Expect = 6.48e-28 / Id = 52.78 Expect = 2.11e-27 / Id = 50.00 Expect = 3.00e-27 / Id = 44.07 Expect = 3.28e-27 / Id = 49.56 Expect = 5.25e-26 / Id = 49.02 Expect = 7.66e-25 / Id = 45.61 Sequence D8LSW9_ECTSI A0A6H5JIA6_9PHAE A0A4D9CWV7_9STRA A0A836CKJ3_9STRA A0A7V4KMS0_9BACT A0A6M1YZS9_9BACT A0A2V5MGH1_9BACT A0A7X0LLG6_9BACT A0A7X5Q305_9BACT A0A7W1VQY8_9BACT Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100086.12.1
>prot_H-elongata_contig100086.12.1 ID=prot_H-elongata_contig100086.12.1|Name=mRNA_H-elongata_contig100086.12.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGE back to top mRNA from alignment at H-elongata_contig100086:2..1208-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100086.12.1 ID=mRNA_H-elongata_contig100086.12.1|Name=mRNA_H-elongata_contig100086.12.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1207bp|location=Sequence derived from alignment at H-elongata_contig100086:2..1208- (Himanthalia elongata Himel1 dioecious)GTGGTCGATTTCTTCAAGCTTCCGATAAACGCGGCG ATGATCCTCGTGGA
CGAAGTAGCACTAGACTTCGGGCAGCTCCGACTCAAGGGGAAGGGCGGCC
CTGGCGGCCACAACGGTCTCAAAAGCATACAGGCACACCTCAAGACGCCC
GACTACACCCGTCTAAGGATAGGCATCGGAGGTGAGAAACGTG GTTCGCG
GTACACAGTCCGGAGGGAAGAGAAGGGAGAATTGTCTACTACTATGGAAA
CTGGTCAATGGTTTCATGTTCGCCATGGAAGAAACGTCTCGAGATGAAAA
CATGCTCGTGATGAGGGCATGACACGCAGTGTCGGTACTCCGTATGCTCA
GGTACTAGGCTAAATTCATGGATAAGATCAAGTTCACTTGATGCGGCTGT
TGTATCTGGTTTTCTCGTGTGCATCGCGACCTCTCGGAGACGCTGAAACT
CCGACGATCTTTCCTCAGCTCCTATTTCGCCCCCCCCCCCCTCTCCCCCG
TCGATTCAGCCGGCTTGAAAGAGCGCTCCACGGCAAGCTCCTCGTCCCCC
AATCCTGACCTGACCTGATGAACCGCGCACGCCTTCGTTTTGACCAGCTT
GCGGCCCGGGTCCGTTGTCAGACTACGTGCTGGGAGAGTTCACAAGGTCG
GAAAAGAGGGAACTGGACAGCGTGATCGCGGAGGCCTGCGACGCAGTAGA
ATGCTGGATCGAGGAAGAGGACATAGACAAGGTCATGACACGCTTCAACG
GTCGATGA CAGAACCAGCAGCTGTGAAGTCCCCGCGTCGCGAGCCACGAT
AGCACGGTAGCGGGGGCGTCGCGTAACCGAAGAAAAATCCCGTGCAGGCT
TGTAGAGAGTGGCTGGGAAGGCGGCTGCCGTCTCACGTGAAATGTTTTTG
ATAGTTAACTATTAATAGTTCAGCATATATAGCATATATCACCTCCGATA
CTGTCTTTACTGTATCGCAAATGTCCACGCTACCAATAGCGGGTGTGGGA
AAAGAGAGACGCACAATAATTGTTCTTTGAGGACTGCTGGTTCAGTCTCG
GTGGACTCGCAATTGCGTGACCTGATGGACTCAGGATTGGCCCGATGGCG
GTTGACGGTAGATATGGACGCCATCGCAGAAAACGAGAGGATCCCGGGAG
TATGCACCAGATTCAACCTGGGTTAACAGCCGGTCGCCCCGGTGGTGTAA
GGGTCAA back to top Coding sequence (CDS) from alignment at H-elongata_contig100086:2..1208-
>mRNA_H-elongata_contig100086.12.1 ID=mRNA_H-elongata_contig100086.12.1|Name=mRNA_H-elongata_contig100086.12.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig100086:2..1208- (Himanthalia elongata Himel1 dioecious) back to top