mRNA_H-elongata_contig100086.12.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: D8LSW9_ECTSI (Peptidyl-tRNA hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW9_ECTSI) HSP 1 Score: 182 bits (462), Expect = 2.610e-54 Identity = 89/115 (77.39%), Postives = 104/115 (90.43%), Query Frame = 1 Query: 1 VVDFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFN 345 V+DFFKLP+NAA++LVDEVALDFGQLRLKGKGG GGHNGLKS+QAHLKTP+YTRLRIG+G K + LSD+VLGEFTR+EK+ELD+VIA+ACDAVE W+EEED+ KVMTRFN Sbjct: 61 VMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEA---LSDHVLGEFTRTEKKELDNVIADACDAVEHWVEEEDMAKVMTRFN 172
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A6H5JIA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA6_9PHAE) HSP 1 Score: 182 bits (463), Expect = 4.230e-52 Identity = 90/115 (78.26%), Postives = 104/115 (90.43%), Query Frame = 1 Query: 1 VVDFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFN 345 V+DFFKLP+NAA++LVDEVALDFGQLRLKGKGG GGHNGLKS+QAHLKTP+YTRLRIG+G K + LSD+VLGEFTR+EK+ELD+VIA+ACDAVE WIEEED+ KVMTRFN Sbjct: 250 VMDFFKLPMNAAIVLVDEVALDFGQLRLKGKGGAGGHNGLKSLQAHLKTPEYTRLRIGVGASKFSEA---LSDHVLGEFTRTEKKELDNVIADACDAVEHWIEEEDMAKVMTRFN 361
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A4D9CWV7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV7_9STRA) HSP 1 Score: 135 bits (340), Expect = 2.550e-32 Identity = 62/115 (53.91%), Postives = 89/115 (77.39%), Query Frame = 1 Query: 1 VVDFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFN 345 V+D+FKLP+++ +++VDEVALD GQ+RL+ G GGHNGLKSI++ LK DY RLRIG+GG PG + D+VLG+F+RSE++ LD ++ +A +A+E WIE+++ DKVM R N Sbjct: 821 VLDYFKLPVSSVLVVVDEVALDIGQIRLRQTGSAGGHNGLKSIESCLKCKDYNRLRIGVGG----AAPGSMVDHVLGQFSRSERKVLDDMLIDAVEAIEDWIEDDNTDKVMNRVN 931
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A836CKJ3_9STRA (Peptidyl-tRNA hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKJ3_9STRA) HSP 1 Score: 125 bits (313), Expect = 5.930e-32 Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 1 VVDFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFNGR 351 V DFFKL + ++L D+VALDFG LRL+ KG GGHNGLKS+Q HL T DY RLRIG+G ++ L +VLGEF++ E++ELD V+++A VE WI E+D VMT NG+ Sbjct: 61 VTDFFKLNADHVLVLTDDVALDFGALRLRMKGSAGGHNGLKSLQQHLGTQDYARLRIGVGAPRK-----DLVSHVLGEFSKVERKELDMVVSDAASVVEHWIAEDDAALVMTAINGK 172
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A7V4KMS0_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7V4KMS0_9BACT) HSP 1 Score: 115 bits (287), Expect = 6.480e-28 Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = 1 Query: 22 PINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFN 345 P + ++LVD+VAL G RL+G G PGGHNGLKSI+A L+ DY RLRIG+G G L+D+VLGEF+R+E+R L+ + DA ECW+EE I+K M+RFN Sbjct: 83 PASELLVLVDDVALPLGTFRLRGAGSPGGHNGLKSIEATLRRRDYARLRIGVGPVP--AGVDDLADFVLGEFSRAERRTLEDQLDRMADACECWVEE-GIEKAMSRFN 187
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A6M1YZS9_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1YZS9_9BACT) HSP 1 Score: 114 bits (284), Expect = 2.110e-27 Identity = 51/102 (50.00%), Postives = 76/102 (74.51%), Query Frame = 1 Query: 7 DFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEE 312 D++K+P++ +++ D+VAL FGQLR++ KG PGGHNGLKS+QA+L T +YTRLR+G+G + + G LSDYVLG+FT E++ L V+ + A+E W+ E Sbjct: 83 DYYKVPMSQLIVVTDDVALPFGQLRIRQKGSPGGHNGLKSVQAYLGTEEYTRLRVGVGDQSK----GELSDYVLGKFTAEEQQLLPDVVDRSTRAIELWLTE 180
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A2V5MGH1_9BACT (Aminoacyl-tRNA hydrolase (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5MGH1_9BACT) HSP 1 Score: 112 bits (281), Expect = 3.000e-27 Identity = 52/118 (44.07%), Postives = 79/118 (66.95%), Query Frame = 1 Query: 7 DFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACG---PGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFNGR 351 +F+++ ++++D+ L FG++R++ +G GGH+GL+SI+AHL T Y RLRIGIG E ACG P +S YVL F ++ L+ V+ ACD VECW++E + K M+R+NGR Sbjct: 48 NFYRVARERLLVVMDDADLPFGEIRMRAEGSSGGHHGLESIEAHLGTRQYARLRIGIGREALACGQHAPREISGYVLAPFRAADAELLEKVLTRACDQVECWLDE-GVGKAMSRYNGR 164
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A7X0LLG6_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0LLG6_9BACT) HSP 1 Score: 113 bits (282), Expect = 3.280e-27 Identity = 56/113 (49.56%), Postives = 75/113 (66.37%), Query Frame = 1 Query: 10 FFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFNG 348 F+KL +ILVDE+ALD GQ+RL+ G PGGHNGLK ++ L T DY RLR+GIG RA P D+VLG FT + E++ + +ACD +E W+E+ I+ MT+FNG Sbjct: 78 FYKLEPEDILILVDEIALDVGQIRLRASGSPGGHNGLKDLERALGTRDYPRLRLGIGPRTRA----PQVDFVLGRFTGEQLDEMNFTLGKACDCIESWLED-GIELAMTKFNG 185
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A7X5Q305_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A7X5Q305_9BACT) HSP 1 Score: 110 bits (274), Expect = 5.250e-26 Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = 1 Query: 7 DFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEE 312 D++K+PI +++ D+VAL FGQLRL+ +G GGHNGL+SI+AHL T +Y+RLRIG+ + G L+DYVL +F++ E+R L V+A A +A+E W+ E Sbjct: 80 DYYKIPIERVIVVTDDVALPFGQLRLRAQGSCGGHNGLRSIEAHLGTQEYSRLRIGVSNREE----GDLADYVLSKFSQEEQRALPDVVASAIEALELWLTE 177
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Match: A0A7W1VQY8_9BACT (Peptidyl-tRNA hydrolase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1VQY8_9BACT) HSP 1 Score: 107 bits (267), Expect = 7.660e-25 Identity = 52/114 (45.61%), Postives = 75/114 (65.79%), Query Frame = 1 Query: 7 DFFKLPINAAMILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEKRACGPGPLSDYVLGEFTRSEKRELDSVIAEACDAVECWIEEEDIDKVMTRFNG 348 +F+K+P ++LVD+ L GQ+RL+GKG GGH+G+ SI+ HL T D+ RLRIGIG ++ +++YVLG+F E L V+ A D VE W++E I+K MT+FNG Sbjct: 81 EFYKVPPKRVLVLVDDADLPLGQIRLRGKGSSGGHHGIDSIEQHLGTQDFPRLRIGIG--RKQSNVREITNYVLGQFGADENELLGKVLTRASDQVESWLDE-GIEKAMTKFNG 191 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100086.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100086.12.1 >prot_H-elongata_contig100086.12.1 ID=prot_H-elongata_contig100086.12.1|Name=mRNA_H-elongata_contig100086.12.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp MILVDEVALDFGQLRLKGKGGPGGHNGLKSIQAHLKTPDYTRLRIGIGGEback to top mRNA from alignment at H-elongata_contig100086:2..1208- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100086.12.1 ID=mRNA_H-elongata_contig100086.12.1|Name=mRNA_H-elongata_contig100086.12.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1207bp|location=Sequence derived from alignment at H-elongata_contig100086:2..1208- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100086:2..1208- >mRNA_H-elongata_contig100086.12.1 ID=mRNA_H-elongata_contig100086.12.1|Name=mRNA_H-elongata_contig100086.12.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig100086:2..1208- (Himanthalia elongata Himel1 dioecious)back to top |