mRNA_H-elongata_contig100066.10.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI) HSP 1 Score: 110 bits (274), Expect = 9.850e-25 Identity = 54/95 (56.84%), Postives = 65/95 (68.42%), Query Frame = -3 Query: 136 KMGECVSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*-KMRRKMHEVWEQIRLGWYAAPT 417
K G+ VS EV +ATRA+ QL HPTKL+E+VE FM G+GW+L WTPPYMP+FQPI FW G + F K +R M EVW Q+R GWY PT
Sbjct: 471 KCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQH---GKQYVSFNFKTKRTMAEVWAQVRKGWYGDPT 562
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 1.720e-20 Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = -3 Query: 148 GRITTHFSRSTDMDGERSTGWKMGECVSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 480
G + +F T+ G + G VS+ EV ATR Y+ L+HP +L E+V FM KGW L WTPPYMP+FQPI FW V L F +++RKM EVW QIR GWY
Sbjct: 149 GVVEYNFEVPTEPGSSFPAGNREGG-VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRKGWY 256
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 3.180e-20 Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = -3 Query: 148 VSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 402
VS+ EV ATR Y+ L+HP +L E+V FM KGW L WTPPYMP+FQPI FW V L F +++RKM EVW QIR GWY
Sbjct: 199 VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRKGWY 281
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 5.110e-20 Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = -3 Query: 148 VSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 402
VS+ EV ATR Y+ L+HP +L E+V FM KGW L WTPPYMP+FQPI FW V L+F +++RKM EVW QIR GWY
Sbjct: 354 VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LKF-ELKRKMREVWVQIRKGWY 436
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 6.780e-20 Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = -3 Query: 148 GRITTHFSRSTDMDGERSTGWKMGECVSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 480
G + +F T+ G + G VS+ EV ATR Y+ L+HP +L E+V FM KGW L WTPPYMP+FQPI FW V L F +++RKM EVW QIR GWY
Sbjct: 446 GVVEYNFEVPTEPGSSFPAGNREGG-VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRKGWY 553
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 6.820e-20 Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = -3 Query: 148 GRITTHFSRSTDMDGERSTGWKMGECVSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 480
G + +F T+ G + G VS+ EV ATR Y+ L+HP +L E+V FM KGW L WTPPYMP+FQPI FW V L F +++RKM EVW QIR GWY
Sbjct: 456 GVVEYNFEVPTEPGSSFPAGNREGG-VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRKGWY 563
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 8.280e-20 Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = -3 Query: 148 VSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 402
VS+ EV ATR Y+ L+HP +L E+V FM KGW L WTPPYMP+FQPI FW V L F +++RKM EVW QIR GWY
Sbjct: 370 VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRKGWY 452
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.000e-19 Identity = 47/85 (55.29%), Postives = 57/85 (67.06%), Query Frame = -3 Query: 148 VSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 402
VS+ EV ATR ++ L+HP +L E+V FM KGW L WTPPYMP+FQPI FW V L F +++RKM EVW QIR GWY
Sbjct: 157 VSRAEVATATREHIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRKGWY 239
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: A0A6H5KUM1_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM1_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 2.110e-19 Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = -3 Query: 151 VSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGW 402
VS+ EV ATR Y+ L+HP +L E+V FM KGW L WTPPYMP+FQPI FW V L F +++RKM EVW QIR GW
Sbjct: 252 VSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRKGW 333
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 4.390e-19 Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = -3 Query: 148 VSKEEVVIATRAYLQLHHPTKLVEQVEAFM*GKGWELTWTPPYMPTFQPIG*FW*RAW*GVCQLQF*KMRRKMHEVWEQIRLGWY 402
VS+ EV ATR Y++L++P +L E+V FM KGW L WTPPYMP+FQPI FW V L F +++RKM EVW QIR GWY
Sbjct: 505 VSRAEVATATREYIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVS-LNF-ELKRKMREVWVQIRQGWY 587 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100066.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100066.10.1 >prot_H-elongata_contig100066.10.1 ID=prot_H-elongata_contig100066.10.1|Name=mRNA_H-elongata_contig100066.10.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp SGNGGNDSGNGGNDSGNGGDDSGNGGNDSGNGGDDSGNGGDDSGNGGSSVback to top mRNA from alignment at H-elongata_contig100066:811..1349+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100066.10.1 ID=mRNA_H-elongata_contig100066.10.1|Name=mRNA_H-elongata_contig100066.10.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=539bp|location=Sequence derived from alignment at H-elongata_contig100066:811..1349+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100066:811..1349+ >mRNA_H-elongata_contig100066.10.1 ID=mRNA_H-elongata_contig100066.10.1|Name=mRNA_H-elongata_contig100066.10.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig100066:811..1349+ (Himanthalia elongata Himel1 dioecious)back to top |