Homology
BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Match:
D8LJX2_ECTSI (Farnesyltransferase, CAAX box, alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJX2_ECTSI)
HSP 1 Score: 116 bits (290), Expect = 3.100e-29
Identity = 61/88 (69.32%), Postives = 65/88 (73.86%), Query Frame = 1
Query: 31 HTDKVAGNYLRAFQASGETSERALFITRLVLEDNPSHYTAWWFRRMYRDVSFFVTFESRCIFALGMDLENELDVAEDIVGYNPKNYQV 294
H VA +YLRAFQASGETSER+L ITRLVLE N SHYTAWWFRR RC+FALGMDL NEL+VAEDI G NPKNYQV
Sbjct: 35 HNYTVATDYLRAFQASGETSERSLAITRLVLEYNASHYTAWWFRR-------------RCLFALGMDLANELEVAEDIAGDNPKNYQV 109
BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Match:
A0A2I1C632_ASPN1 (CaaX farnesyltransferase alpha subunit Ram2 n=19 Tax=Aspergillus TaxID=5052 RepID=A0A2I1C632_ASPN1)
HSP 1 Score: 58.9 bits (141), Expect = 5.110e-8
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 1
Query: 46 AGNYLRAFQASGETSERALFITRLVLEDNPSHYTAWWFRRMYRDVSFFVTFESRCIFALGMDLENELDVAEDIVGYNPKNYQVW 297
A +YLRA A+ E SERAL +T ++ NP+HYT W +R ++ +FALG +L E++ + + KNYQ+W
Sbjct: 42 ATSYLRAVMAANEMSERALRLTGDIISMNPAHYTVWIYR-------------AKILFALGKNLNEEIEWLNKVALKHLKNYQIW 112
BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Match:
A0A0C3PXD4_PISTI (Uncharacterized protein n=2 Tax=Pisolithus TaxID=37467 RepID=A0A0C3PXD4_PISTI)
HSP 1 Score: 53.1 bits (126), Expect = 5.510e-6
Identity = 29/86 (33.72%), Postives = 44/86 (51.16%), Query Frame = 1
Query: 40 KVAGNYLRAFQASGETSERALFITRLVLEDNPSHYTAWWFRRMYRDVSFFVTFESRCIFALGMDLENELDVAEDIVGYNPKNYQVW 297
K A +Y R +GE S R L +T ++ NP+HY+AW +R + + ALG+ LE EL + +++ K YQVW
Sbjct: 42 KDATDYFRGIVKTGEKSLRVLDLTENIIRQNPAHYSAWQYRY-------------KTLMALGVPLEEELRLMDELAVKYLKTYQVW 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 3.10e-29 / Id = 69.32 Expect = 5.11e-8 / Id = 36.90 Expect = 5.51e-6 / Id = 33.72 Sequence D8LJX2_ECTSI A0A2I1C632_ASPN1 A0A0C3PXD4_PISTI back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 116.7 Seed ortholog evalue 6.2e-24 Seed eggNOG ortholog 2880.D8LJX2 Preferred name RAM2 KEGG rclass RC00069,RC03004 KEGG ko ko:K05955 KEGG Reaction R09844 KEGG Pathway ko00900,ko01130,map00900,map01130 GOs GO:0001101,GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0004660,GO:0004661,GO:0004662,GO:0004663,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005953,GO:0005965,GO:0006464,GO:0006807,GO:0006950,GO:0007323,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0008360,GO:0009414,GO:0009415,GO:0009628,GO:0009787,GO:0009788,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010467,GO:0010646,GO:0010648,GO:0016740,GO:0016765,GO:0018342,GO:0018343,GO:0018344,GO:0019538,GO:0022603,GO:0022604,GO:0023051,GO:0023057,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048509,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051604,GO:0051641,GO:0065007,GO:0065008,GO:0070727,GO:0071704,GO:0072657,GO:0072659,GO:0097354,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990234,GO:1990778 EggNOG free text desc. CAAX-protein geranylgeranyltransferase activity EggNOG OGs COG5536@1,KOG0530@2759 EC 2.5.1.58,2.5.1.59 COG Functional cat. O Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko01000,ko01006 Hectar predicted targeting category other localisation Ec32 ortholog description Protein prenyltransferase, alpha subunit Ec32 ortholog Ec-01_010010.1 Exons 2 Model size 300 Cds size 300 Stop 1 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929543.2332437-CDS-H-elongata_contig100023:1537..1703 1622929543.2332437-CDS-H-elongata_contig100023:1537..1703 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100023 1538..1703 + 1691679061.7756267-CDS-H-elongata_contig100023:1537..1703 1691679061.7756267-CDS-H-elongata_contig100023:1537..1703 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100023 1538..1703 + 1622929543.2508929-CDS-H-elongata_contig100023:2151..2285 1622929543.2508929-CDS-H-elongata_contig100023:2151..2285 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100023 2152..2285 + 1691679061.8138425-CDS-H-elongata_contig100023:2151..2285 1691679061.8138425-CDS-H-elongata_contig100023:2151..2285 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100023 2152..2285 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100023.7.1
>prot_H-elongata_contig100023.7.1 ID=prot_H-elongata_contig100023.7.1|Name=mRNA_H-elongata_contig100023.7.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MTNGNLLRGEHTDKVAGNYLRAFQASGETSERALFITRLVLEDNPSHYTA back to top mRNA from alignment at H-elongata_contig100023:1538..2285+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100023.7.1 ID=mRNA_H-elongata_contig100023.7.1|Name=mRNA_H-elongata_contig100023.7.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=748bp|location=Sequence derived from alignment at H-elongata_contig100023:1538..2285+ (Himanthalia elongata Himel1 dioecious)ATGACGAACGGCAACCTTCTGCGCGGCGAACACACAGACAAGGTCGCCGG
GAACTACTTGAGAGCCTTCCAGGCCTCCGGAGAGACGAGCGAGAGGGCGC
TTTTCATCACACGACTGGTCCTAGAAGATAACCCGTCGCACTACACAGCA
TGGTGGTTCCGTCGAA GTTGAGAATGACGAGGCGGGGTGGGGGGACTGCT
GCCGCGGAGCATGCACGCTTTGACTCGCGTCGGCGATCATGATCCACCTC
TCCATCTCTTCCCGTCCCTGGGGCGAGCGAAAAGTTGTTTTTGATCCTTC
TACCTGTGTTGAATCGATGTTCTGCTATCTCTTTCTTCCCTCCCAGAAGA
TAGTCTCTCTCTCTCTCTTTTGAGTAACAACCCTAAAGTGTCGAGAGCAA
AATAAAGTAAATCTCCGATTGGTAACGTTCGTTTCGGGACATCCAGCGGG
TACGGGGCATGGGGGGGGTATCGGGCGTTCAATCAACATTTAACCAGCTA
CGCAGCGACGATAACAGTCCCGCTGCCGCCGTTCGACGGAGTTGCCACCG
TTGACGCCTGAATTGGCTTACAGCCTAGTATTAGTATAGATCGGCAATGT
TTTAAATTCATAAGTGTATCGTGATGTGTCTTTCTTTGTAACCTTTGAGA
GCAGATGCATCTTCGCCTTGGGAATGGATCTGGAGAATGAGTTGGACGTC
GCGGAAGATATCGTGGGTTATAACCCGAAGAACTACCAGGTTTGGTGA back to top Coding sequence (CDS) from alignment at H-elongata_contig100023:1538..2285+
>mRNA_H-elongata_contig100023.7.1 ID=mRNA_H-elongata_contig100023.7.1|Name=mRNA_H-elongata_contig100023.7.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig100023:1538..2285+ (Himanthalia elongata Himel1 dioecious) back to top