Homology
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match:
D7FUT2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUT2_ECTSI)
HSP 1 Score: 156 bits (394), Expect = 3.320e-46
Identity = 83/91 (91.21%), Postives = 86/91 (94.51%), Query Frame = 1
Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
MGNK+SLENELINLRLTSKQ QR AIKC KNE AAKAKLR+AIKAGNIEGARIYGQNAIREKNQ+LNCLRLSSRIDAV SRLETAIRMKQV
Sbjct: 1 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQV 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match:
A0A7S1Z7S6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z7S6_TRICV)
HSP 1 Score: 137 bits (346), Expect = 5.680e-39
Identity = 72/91 (79.12%), Postives = 81/91 (89.01%), Query Frame = 1
Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
MGNKISLE+ELINLR+TSKQMQRSA KC KNE AA KL+ AIK GN EGARIYGQ+AIREKNQALNC+R++SRIDAV SR+ETA+RM QV
Sbjct: 1 MGNKISLEDELINLRITSKQMQRSAKKCEKNEKAALEKLKKAIKQGNAEGARIYGQDAIREKNQALNCIRMASRIDAVSSRIETAVRMNQV 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match:
A0A7S4MGQ3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MGQ3_9STRA)
HSP 1 Score: 132 bits (333), Expect = 5.110e-37
Identity = 69/91 (75.82%), Postives = 80/91 (87.91%), Query Frame = 1
Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
MGN +SLE+ELINLR+TSKQMQRSA KC KNE AA KL+ AIK+GN EGARIYGQ+AIREKNQALNC+R++SRIDAV SR+ETA+RM V
Sbjct: 1 MGNSVSLEDELINLRITSKQMQRSAKKCEKNEKAAIEKLKKAIKSGNPEGARIYGQDAIREKNQALNCMRMASRIDAVASRIETAVRMNTV 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match:
B8C7T4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7T4_THAPS)
HSP 1 Score: 131 bits (329), Expect = 2.170e-36
Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 1
Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
MGN ISLE ELINLR+TSKQMQRS+ KC KNE AA KL+ AIK GN EGARIY Q+AIREKNQALNCLRL+SRIDAV SRLETA+RM V
Sbjct: 1 MGNSISLEEELINLRMTSKQMQRSSKKCEKNEKAAVDKLKKAIKQGNSEGARIYAQDAIREKNQALNCLRLASRIDAVASRLETAVRMNTV 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match:
A0A836C887_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C887_9STRA)
HSP 1 Score: 130 bits (328), Expect = 2.680e-36
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 1
Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
MGNK+SLE ELINL+LT+KQMQRS+ KCNK EAAAKAK++ AI+ GN+EGA+I QNAIREKNQ+LN LRL+SRIDAV +RLETA+RMKQV
Sbjct: 1 MGNKVSLETELINLKLTAKQMQRSSTKCNKAEAAAKAKVKVAIQKGNMEGAKIAAQNAIREKNQSLNYLRLASRIDAVAARLETAVRMKQV 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match:
A0A7S2SCB7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCB7_9STRA)
HSP 1 Score: 126 bits (317), Expect = 1.270e-34
Identity = 68/91 (74.73%), Postives = 78/91 (85.71%), Query Frame = 1
Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
MGNKISLE+ELINLR+TSKQMQRSA K KNE A KL+ AIK GN EGA+IYGQ+AIREKNQALNC R++SR+DAV SR+ETAIRM +V
Sbjct: 1 MGNKISLEDELINLRITSKQMQRSAKKSEKNEKANIEKLKQAIKKGNSEGAKIYGQSAIREKNQALNCQRMASRVDAVSSRIETAIRMGEV 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match:
A0A836CEV0_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEV0_9STRA)
HSP 1 Score: 125 bits (314), Expect = 3.800e-34
Identity = 67/91 (73.63%), Postives = 80/91 (87.91%), Query Frame = 1
Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
MGNK+SLE ELIN+RLTSKQMQR++ KC KNEA+AK +++ +I+ GN+EGA+I QNAIREKNQALN LRLSSRIDAV SRLETAIR KQ+
Sbjct: 1 MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQM 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match:
A0A1E7FAS9_9STRA (Charged multivesicular body protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAS9_9STRA)
HSP 1 Score: 123 bits (308), Expect = 3.230e-33
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 1
Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
MGN++SLE+E++NLR+ SKQMQRSA KC KNE A+ KL+ AI+ GN EGARIYGQ+AIREKNQALN LR++SRIDA SR+ETA+RM QV
Sbjct: 1 MGNRVSLEDEMVNLRIVSKQMQRSAKKCEKNEKASMDKLKKAIQKGNHEGARIYGQDAIREKNQALNHLRMASRIDACSSRIETAVRMGQV 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match:
A0A7R9WCX5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WCX5_9STRA)
HSP 1 Score: 122 bits (307), Expect = 5.780e-33
Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1
Query: 4 GNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
G K SLE+ELINLR+TSK MQRSA KC KNE AA KL+ AIK GN EGARI+GQ+AIREKNQALNCL+++SRIDAV SR+ETA+RM V
Sbjct: 13 GGKPSLEDELINLRITSKTMQRSAKKCEKNEKAAIEKLKKAIKQGNAEGARIHGQDAIREKNQALNCLKMASRIDAVSSRIETAVRMGTV 102
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match:
A0A7S2L033_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L033_9STRA)
HSP 1 Score: 121 bits (304), Expect = 1.230e-32
Identity = 65/91 (71.43%), Postives = 77/91 (84.62%), Query Frame = 1
Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273
MGNKISLE+ELINLR+TSK M RS++KC K+E AA +L+ AIK GN EGARIY Q+AIREKNQA+N LR++SRIDAV +RLETAIRM V
Sbjct: 1 MGNKISLEDELINLRITSKSMNRSSVKCKKSEKAALDRLKKAIKQGNTEGARIYAQDAIREKNQAVNHLRMASRIDAVAARLETAIRMDTV 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 3.32e-46 / Id = 91.21 Expect = 5.68e-39 / Id = 79.12 Expect = 5.11e-37 / Id = 75.82 Expect = 2.17e-36 / Id = 78.02 Expect = 2.68e-36 / Id = 75.82 Expect = 1.27e-34 / Id = 74.73 Expect = 3.80e-34 / Id = 73.63 Expect = 3.23e-33 / Id = 70.33 Expect = 5.78e-33 / Id = 73.33 Expect = 1.23e-32 / Id = 71.43 Sequence D7FUT2_ECTSI A0A7S1Z7S6_TRICV A0A7S4MGQ3_9STRA B8C7T4_THAPS A0A836C887_9STRA A0A7S2SCB7_9STRA A0A836CEV0_9STRA A0A1E7FAS9_9STRA A0A7R9WCX5_9STRA A0A7S2L033_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 158.7 Seed ortholog evalue 1.4e-36 Seed eggNOG ortholog 2880.D7FUT2 Preferred name CHMP1A KEGG ko ko:K12197,ko:K16230 KEGG Pathway ko04144,ko04217,map04144,map04217 KEGG Module M00412 GOs GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000815,GO:0000819,GO:0000920,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005815,GO:0005856,GO:0006323,GO:0006355,GO:0006508,GO:0006511,GO:0006605,GO:0006623,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0006997,GO:0007032,GO:0007034,GO:0007049,GO:0007059,GO:0007076,GO:0007080,GO:0007088,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010256,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010824,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016363,GO:0016458,GO:0016787,GO:0019058,GO:0019068,GO:0019219,GO:0019222,GO:0019538,GO:0019904,GO:0019941,GO:0021549,GO:0022037,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023057,GO:0030117,GO:0030163,GO:0030261,GO:0030496,GO:0030902,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032509,GO:0032511,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034399,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0042058,GO:0042059,GO:0042802,GO:0042803,GO:0042886,GO:0043162,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045177,GO:0045184,GO:0045324,GO:0045786,GO:0045892,GO:0045934,GO:0046605,GO:0046755,GO:0046872,GO:0046907,GO:0046914,GO:0046983,GO:0048285,GO:0048475,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051493,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0060236,GO:0060255,GO:0060322,GO:0065007,GO:0070011,GO:0070013,GO:0070507,GO:0070727,GO:0070925,GO:0071103,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0090169,GO:0090224,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:0140096,GO:1901184,GO:1901185,GO:1901564,GO:1901565,GO:1901575,GO:1901673,GO:1902115,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1904896,GO:1904903,GO:2000112,GO:2000113,GO:2001141 EggNOG free text desc. vacuolar transport EggNOG OGs COG5491@1,KOG3232@2759 COG Functional cat. N Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko03000,ko04131,ko04147 Hectar predicted targeting category other localisation Exons 1 Model size 303 Cds size 303 Stop 1 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929543.1800668-CDS-H-elongata_contig100011:908..1211 1622929543.1800668-CDS-H-elongata_contig100011:908..1211 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100011 909..1211 - 1691679061.6117523-CDS-H-elongata_contig100011:908..1211 1691679061.6117523-CDS-H-elongata_contig100011:908..1211 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig100011 909..1211 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100011.6.1
>prot_H-elongata_contig100011.6.1 ID=prot_H-elongata_contig100011.6.1|Name=mRNA_H-elongata_contig100011.6.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEG back to top mRNA from alignment at H-elongata_contig100011:909..1211-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100011.6.1 ID=mRNA_H-elongata_contig100011.6.1|Name=mRNA_H-elongata_contig100011.6.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig100011:909..1211- (Himanthalia elongata Himel1 dioecious)ATGGGAAACAAGATTTCTCTGGAAAATGAGCTCATCAACCTGAGGCTAAC
CTCGAAGCAAATGCAGAGGAGCGCTATCAAGTGCAATAAGAATGAGGCGG
CCGCCAAGGCGAAGCTGCGCGACGCGATTAAGGCAGGCAACATCGAAGGC
GCCCGCATCTACGGCCAAAATGCTATTCGAGAAAAGAACCAGGCGCTAAA
TTGCTTAAGGCTAAGTAGTCGGATAGATGCGGTGGGCTCGCGGCTGGAGA
CAGCCATTCGGATGAAACAGGTGATTTGGGAGCGTCTGATGTTGAAAGTT
TAA back to top Coding sequence (CDS) from alignment at H-elongata_contig100011:909..1211-
>mRNA_H-elongata_contig100011.6.1 ID=mRNA_H-elongata_contig100011.6.1|Name=mRNA_H-elongata_contig100011.6.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig100011:909..1211- (Himanthalia elongata Himel1 dioecious) back to top