mRNA_H-elongata_contig100011.6.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: D7FUT2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUT2_ECTSI) HSP 1 Score: 156 bits (394), Expect = 3.320e-46 Identity = 83/91 (91.21%), Postives = 86/91 (94.51%), Query Frame = 1 Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273 MGNK+SLENELINLRLTSKQ QR AIKC KNE AAKAKLR+AIKAGNIEGARIYGQNAIREKNQ+LNCLRLSSRIDAV SRLETAIRMKQV Sbjct: 1 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQV 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A7S1Z7S6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z7S6_TRICV) HSP 1 Score: 137 bits (346), Expect = 5.680e-39 Identity = 72/91 (79.12%), Postives = 81/91 (89.01%), Query Frame = 1 Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273 MGNKISLE+ELINLR+TSKQMQRSA KC KNE AA KL+ AIK GN EGARIYGQ+AIREKNQALNC+R++SRIDAV SR+ETA+RM QV Sbjct: 1 MGNKISLEDELINLRITSKQMQRSAKKCEKNEKAALEKLKKAIKQGNAEGARIYGQDAIREKNQALNCIRMASRIDAVSSRIETAVRMNQV 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A7S4MGQ3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MGQ3_9STRA) HSP 1 Score: 132 bits (333), Expect = 5.110e-37 Identity = 69/91 (75.82%), Postives = 80/91 (87.91%), Query Frame = 1 Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273 MGN +SLE+ELINLR+TSKQMQRSA KC KNE AA KL+ AIK+GN EGARIYGQ+AIREKNQALNC+R++SRIDAV SR+ETA+RM V Sbjct: 1 MGNSVSLEDELINLRITSKQMQRSAKKCEKNEKAAIEKLKKAIKSGNPEGARIYGQDAIREKNQALNCMRMASRIDAVASRIETAVRMNTV 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: B8C7T4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7T4_THAPS) HSP 1 Score: 131 bits (329), Expect = 2.170e-36 Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 1 Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273 MGN ISLE ELINLR+TSKQMQRS+ KC KNE AA KL+ AIK GN EGARIY Q+AIREKNQALNCLRL+SRIDAV SRLETA+RM V Sbjct: 1 MGNSISLEEELINLRMTSKQMQRSSKKCEKNEKAAVDKLKKAIKQGNSEGARIYAQDAIREKNQALNCLRLASRIDAVASRLETAVRMNTV 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A836C887_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C887_9STRA) HSP 1 Score: 130 bits (328), Expect = 2.680e-36 Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 1 Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273 MGNK+SLE ELINL+LT+KQMQRS+ KCNK EAAAKAK++ AI+ GN+EGA+I QNAIREKNQ+LN LRL+SRIDAV +RLETA+RMKQV Sbjct: 1 MGNKVSLETELINLKLTAKQMQRSSTKCNKAEAAAKAKVKVAIQKGNMEGAKIAAQNAIREKNQSLNYLRLASRIDAVAARLETAVRMKQV 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A7S2SCB7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCB7_9STRA) HSP 1 Score: 126 bits (317), Expect = 1.270e-34 Identity = 68/91 (74.73%), Postives = 78/91 (85.71%), Query Frame = 1 Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273 MGNKISLE+ELINLR+TSKQMQRSA K KNE A KL+ AIK GN EGA+IYGQ+AIREKNQALNC R++SR+DAV SR+ETAIRM +V Sbjct: 1 MGNKISLEDELINLRITSKQMQRSAKKSEKNEKANIEKLKQAIKKGNSEGAKIYGQSAIREKNQALNCQRMASRVDAVSSRIETAIRMGEV 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A836CEV0_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEV0_9STRA) HSP 1 Score: 125 bits (314), Expect = 3.800e-34 Identity = 67/91 (73.63%), Postives = 80/91 (87.91%), Query Frame = 1 Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273 MGNK+SLE ELIN+RLTSKQMQR++ KC KNEA+AK +++ +I+ GN+EGA+I QNAIREKNQALN LRLSSRIDAV SRLETAIR KQ+ Sbjct: 1 MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQM 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A1E7FAS9_9STRA (Charged multivesicular body protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAS9_9STRA) HSP 1 Score: 123 bits (308), Expect = 3.230e-33 Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 1 Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273 MGN++SLE+E++NLR+ SKQMQRSA KC KNE A+ KL+ AI+ GN EGARIYGQ+AIREKNQALN LR++SRIDA SR+ETA+RM QV Sbjct: 1 MGNRVSLEDEMVNLRIVSKQMQRSAKKCEKNEKASMDKLKKAIQKGNHEGARIYGQDAIREKNQALNHLRMASRIDACSSRIETAVRMGQV 91
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A7R9WCX5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WCX5_9STRA) HSP 1 Score: 122 bits (307), Expect = 5.780e-33 Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 1 Query: 4 GNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273 G K SLE+ELINLR+TSK MQRSA KC KNE AA KL+ AIK GN EGARI+GQ+AIREKNQALNCL+++SRIDAV SR+ETA+RM V Sbjct: 13 GGKPSLEDELINLRITSKTMQRSAKKCEKNEKAAIEKLKKAIKQGNAEGARIHGQDAIREKNQALNCLKMASRIDAVSSRIETAVRMGTV 102
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Match: A0A7S2L033_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L033_9STRA) HSP 1 Score: 121 bits (304), Expect = 1.230e-32 Identity = 65/91 (71.43%), Postives = 77/91 (84.62%), Query Frame = 1 Query: 1 MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGARIYGQNAIREKNQALNCLRLSSRIDAVGSRLETAIRMKQV 273 MGNKISLE+ELINLR+TSK M RS++KC K+E AA +L+ AIK GN EGARIY Q+AIREKNQA+N LR++SRIDAV +RLETAIRM V Sbjct: 1 MGNKISLEDELINLRITSKSMNRSSVKCKKSEKAALDRLKKAIKQGNTEGARIYAQDAIREKNQAVNHLRMASRIDAVAARLETAIRMDTV 91 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100011.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100011.6.1 >prot_H-elongata_contig100011.6.1 ID=prot_H-elongata_contig100011.6.1|Name=mRNA_H-elongata_contig100011.6.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp MGNKISLENELINLRLTSKQMQRSAIKCNKNEAAAKAKLRDAIKAGNIEGback to top mRNA from alignment at H-elongata_contig100011:909..1211- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100011.6.1 ID=mRNA_H-elongata_contig100011.6.1|Name=mRNA_H-elongata_contig100011.6.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig100011:909..1211- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100011:909..1211- >mRNA_H-elongata_contig100011.6.1 ID=mRNA_H-elongata_contig100011.6.1|Name=mRNA_H-elongata_contig100011.6.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig100011:909..1211- (Himanthalia elongata Himel1 dioecious)back to top |