mRNA_H-elongata_contig10000.4.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-elongata_contig10000.4.1 vs. uniprot
Match: A0A6H5JZJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ7_9PHAE) HSP 1 Score: 259 bits (661), Expect = 6.140e-73 Identity = 153/320 (47.81%), Postives = 207/320 (64.69%), Query Frame = 1 Query: 1141 RQAVTARSRASSPPAPSXXXXXXXXXXXXXIPHDLARLAKKQIKQLCGLLAGTERPYPGPCGLDEPISEIAGFVRESHNAWRAVGSRRQAGSGGPASRARCGLVIAGRSGTGKSTAFQAAMR-SVATEDRAATLRFVTIKCAQIY-GNPNEVFSSILAAVTGSSMRVDADSALEVLSRLDEPPPSLPVICL-DYAERLKPFVLQRLLSMAAQGKALFAVVCLVGSLDMGEEIVYNQGCLERDCSLVAMLGCKEDQLRAILGQTLGAASPEDKDGELIASLVNKGALDVIAKTVARVCGSARIALNVCEVAFAERLLELDQ 2091
RQAVTAR A SPPAPS + +L RLA KQ+K + G+L GTERP+PGPCG++ P++++ FV+++HNAW A +R +V+AG G+GKSTAFQAA + S+ + TLRFVTIK Q+ +PN++FS +L +VT + R+D ALE L RL EP L V + D + L L+RLL +A +G + FAVV +V SLD E+ + QG RDC ++ M+ C+ED+LRAILGQ+LGA+ P+DKDGE++A LVNK ALD IA VARV GS R+AL+VCEVA R+ EL++
Sbjct: 2 RQAVTARRLAKSPPAPSPAKRPKRAAPQVTL-KELVRLANKQLKTVRGILDGTERPFPGPCGVERPVADVVKFVKKAHNAWLAQLQQRNNVGALQGMIGAGAMVLAGPRGSGKSTAFQAAAKASIVGVAKVTTLRFVTIKGDQLNEDDPNDIFSKVLRSVTNA--RMDGKRALEELGRLSEPSRFLTVFAVEDVKQTLSSVTLERLLDLAYKGGSPFAVVYMVPSLDRAIELKFEQGMKRRDCRVIHMMPCEEDRLRAILGQSLGASGPDDKDGEVVAGLVNKAALDTIASVVARVSGSIRVALHVCEVALGNRVRELEK 318
BLAST of mRNA_H-elongata_contig10000.4.1 vs. uniprot
Match: D8LKB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB1_ECTSI) HSP 1 Score: 236 bits (603), Expect = 9.670e-64 Identity = 195/524 (37.21%), Postives = 248/524 (47.33%), Query Frame = 1 Query: 4 IRRYLGESAEWEFIPANETYVLPFEEHRAALARQRLGAQMKHHFGPALAAADAIMKGRPSEPGGSKNTRPPTPGSSSKRPGVLLDFGTGTSFSSFAELWNYLLHNGWGTSPGKGLASWHYFPPGSDPKKRNSILDEDYFTSEEMVINYVRRTGLERPAPVTTVSRRSSSSTPSQRTNSRTADVR----PNAGKRSQSTTPVSSSGKRRSSPASAXXXXXXXXXXXPSSVVARSSVKVAVAASATVKDGRSNKGNKNKGDAPVRSKDRGKVSARTGAGADARSAVERDSVRNFDDLRTKERQDDGGGVELFFTAD--------------------EGQKGGRGDSQGAETIGDSDEKDHHSWRSDRQ-EDFHVGPKRSHGRTMVVEAANMSSARGSPPNIVGEVTRQAVTARSRASSPPAPSXXXXXXXXXXXXXIPHDLARLAKKQIKQLCGLLAGTERPYPGPCGLDEPISEIAGFVRESHNAWRAVGSRRQAGSGGPASRARCGLVIAGRSGTGKSTAFQAA 1500
+ RYLGE+ EWEFI ++ ++LPF+ HR L++QR A M H P KR GVLLDFGTGTSF+SFAELWNYL HNGW T PGKGLASWHYFPPGSDPK R+ +L D+F SE+ VI++VRRTGLERPAPV TV RSS + S+ ++R +D R P A ++ P S GKR+ S S XXXXX +G+KG +GA G + + + R E VG KRSHG+TM VEAA +S RGS PN+ +V RQAVTAR A SPPAPS P +L RLA KQ+K + G+L GTERP+PGPCG++ P++++ FV+++HNAW A +R + +V+AG G+GKSTAFQAA
Sbjct: 14 LERYLGETPEWEFIARDDEHLLPFKVHRDRLSKQR--ASMAH-MNP-------------------------------KRTGVLLDFGTGTSFASFAELWNYLRHNGWATLPGKGLASWHYFPPGSDPKMRHPVLRRDFFDSEDAVIDHVRRTGLERPAPVGTVIGRSSPGSTSRPGSTRVSDARRSPPPTAPTQADPGKPAS--GKRKPSSRSGAAVAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGEKG-----EGAVPSGGGEARRGRPQQGGRDTEPSAVGGKRSHGKTMQVEAALVSPPRGSAPNLTRQVMRQAVTARRLAKSPPAPSPSKRPKRAAPQVA-PKELVRLANKQLKTVRGILDGTERPFPGPCGVERPVADVVKFVKKAHNAWLAQLQQRNNVAALQGMIGAGAIVLAGPRGSGKSTAFQAA 495
BLAST of mRNA_H-elongata_contig10000.4.1 vs. uniprot
Match: A0A6H5JYH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH6_9PHAE) HSP 1 Score: 207 bits (527), Expect = 2.750e-54 Identity = 112/196 (57.14%), Postives = 137/196 (69.90%), Query Frame = 1 Query: 1 VIRRYLGESAEWEFIPANETYVLPFEEHRAALARQRLGAQMKHHFGPALAAADAIMKGRPSEPGGSKN----TRPPTPGSSS-------KRPGVLLDFGTGTSFSSFAELWNYLLHNGWGTSPGKGLASWHYFPPGSDPKKRNSILDEDYFTSEEMVINYVRRTGLERPAPVTTVSRRSSSSTPSQRTNSRTADVR 555
V+ YLGE+ EWEFI ++ ++LPF+ HR L +QRLGAQ+KH F PALAAAD++ + + P TP S + KR GVLLDFGTGTSF+SFAELWNYL HNGW T PGKGLASWHYFPPGSDPK R+ +L D+F SE+ VI++VRRTGLERPAPV TV RSS + S+ +SR +D R
Sbjct: 66 VLNLYLGETPEWEFIARDDEHLLPFKPHRDRLCKQRLGAQLKHQFAPALAAADSMTRQQXXXXXXXXXXXSCATPGTPVSKASMAHMNPKRTGVLLDFGTGTSFASFAELWNYLRHNGWATLPGKGLASWHYFPPGSDPKMRHPVLRRDFFDSEDAVIDHVRRTGLERPAPVGTVIGRSSPGSTSRSGSSRVSDAR 261 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10000.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10000.4.1 >prot_H-elongata_contig10000.4.1 ID=prot_H-elongata_contig10000.4.1|Name=mRNA_H-elongata_contig10000.4.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=739bp MKHHFGPALAAADAIMKGRPSEPGGSKNTRPPTPGSSSKRPGVLLDFGTGback to top mRNA from alignment at H-elongata_contig10000:1845..9039- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10000.4.1 ID=mRNA_H-elongata_contig10000.4.1|Name=mRNA_H-elongata_contig10000.4.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7195bp|location=Sequence derived from alignment at H-elongata_contig10000:1845..9039- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10000:1845..9039- >mRNA_H-elongata_contig10000.4.1 ID=mRNA_H-elongata_contig10000.4.1|Name=mRNA_H-elongata_contig10000.4.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4434bp|location=Sequence derived from alignment at H-elongata_contig10000:1845..9039- (Himanthalia elongata Himel1 dioecious)back to top |