mRNA_H-akashiwo_Contig105.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig105.8.1
Unique NamemRNA_H-akashiwo_Contig105.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig105.8.1 vs. uniprot
Match: A0A6V1PDI6_HETAK (Histidine kinase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PDI6_HETAK)

HSP 1 Score: 208 bits (529), Expect = 6.700e-60
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 3
Query:    3 ERHLPGASVDQAYDGRQALEMAGARAYAMVLMDLQMPGMDGYQAAKAIRLSNGPSAKARIVAVSATAETEARAMCLDAGMDDFLMKPLTMVGLKKALHTHLIKASSKKK 329
            ERHLPGASVDQAYDGRQALEMAGARAYAMVLMDLQMPGMDGYQAAKAIRLSNGPSAKARIVAVSATAETEARAMCLDAGMDDFLMKPLTMVGLKKALHTHLIKASSKKK
Sbjct:  695 ERHLPGASVDQAYDGRQALEMAGARAYAMVLMDLQMPGMDGYQAAKAIRLSNGPSAKARIVAVSATAETEARAMCLDAGMDDFLMKPLTMVGLKKALHTHLIKASSKKK 803          
BLAST of mRNA_H-akashiwo_Contig105.8.1 vs. uniprot
Match: A0A3M0YPL5_9BACT (Response regulator (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M0YPL5_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 1.690e-18
Identity = 47/104 (45.19%), Postives = 73/104 (70.19%), Query Frame = 3
Query:   18 GASVDQAYDGRQALEMAGARAYAMVLMDLQMPGMDGYQAAKAIRLSNGPSAKARIVAVSATAETEARAMCLDAGMDDFLMKPLTMVGLKKALHTHLIKASSKKK 329
            G + D A++G++AL++A  + Y ++ MDLQMP MDG +A +A+R S+GP+A+  IVA++A+A T  +   LDAGM+DFL KP +   L++ L+T+ IKA    K
Sbjct:   43 GITHDLAHNGKEALQLASQQPYDLIFMDLQMPFMDGIEATRALRTSDGPNARTPIVALTASALTSRKNEALDAGMNDFLPKPFSPNQLRQMLNTYAIKAGQSMK 146          
BLAST of mRNA_H-akashiwo_Contig105.8.1 vs. uniprot
Match: UPI001F0BE5A7 (ATP-binding protein n=1 Tax=Rhodovarius crocodyli TaxID=1979269 RepID=UPI001F0BE5A7)

HSP 1 Score: 87.4 bits (215), Expect = 3.150e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 3
Query:   18 GASVDQAYDGRQALEMAGARAYAMVLMDLQMPGMDGYQAAKAIRLSNGPSAKARIVAVSATAETEARAMCLDAGMDDFLMKPL 266
            G  VD A DG  ALE AG  AY ++LMD+QMP MDG +A + IR  +GPSA+ARI+ ++A A  E    CLDAGMD++L KP+
Sbjct:  275 GCEVDVADDGVAALEAAGHTAYGIILMDVQMPRMDGLEATRMIRAGDGPSARARIIGLTAAAGPEYEKQCLDAGMDEYLTKPI 357          
BLAST of mRNA_H-akashiwo_Contig105.8.1 vs. uniprot
Match: A0A437MIL3_9PROT (Histidine kinase n=1 Tax=Rhodovarius crocodyli TaxID=1979269 RepID=A0A437MIL3_9PROT)

HSP 1 Score: 87.4 bits (215), Expect = 6.710e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 3
Query:   18 GASVDQAYDGRQALEMAGARAYAMVLMDLQMPGMDGYQAAKAIRLSNGPSAKARIVAVSATAETEARAMCLDAGMDDFLMKPL 266
            G  VD A DG  ALE AG  AY ++LMD+QMP MDG +A + IR  +GPSA+ARI+ ++A A  E    CLDAGMD++L KP+
Sbjct:  732 GCEVDVADDGVAALEAAGHTAYGIILMDVQMPRMDGLEATRMIRAGDGPSARARIIGLTAAAGPEYEKQCLDAGMDEYLTKPI 814          
BLAST of mRNA_H-akashiwo_Contig105.8.1 vs. uniprot
Match: UPI001F190BCD (response regulator n=1 Tax=Rhodovarius lipocyclicus TaxID=268410 RepID=UPI001F190BCD)

HSP 1 Score: 80.5 bits (197), Expect = 1.080e-16
Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = 3
Query:   18 GASVDQAYDGRQALEMAGARAYAMVLMDLQMPGMDGYQAAKAIRLSNGPSAKARIVAVSATAETEARAMCLDAGMDDFLMKPL 266
            G  V+ A +G +A++ A   A+A++LMD+QMP MDG +A + IR S GP+A+ARI+ ++A A  E    CL+AGMD++L KP+
Sbjct:    6 GCEVEVANNGLEAVDAAAREAFAVILMDVQMPQMDGLEATRQIRASGGPNARARIIGLTAAAGPEYERQCLEAGMDEYLTKPI 88          
BLAST of mRNA_H-akashiwo_Contig105.8.1 vs. uniprot
Match: A0A495WDK2_9RHOO (Histidine kinase n=2 Tax=Azonexus fungiphilus TaxID=146940 RepID=A0A495WDK2_9RHOO)

HSP 1 Score: 85.9 bits (211), Expect = 2.320e-16
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 3
Query:   18 GASVDQAYDGRQALEMAGARAYAMVLMDLQMPGMDGYQAAKAIRLSNGPSAKARIVAVSATAETEARAMCLDAGMDDFLMKPLTMVGLKKALHTHL 305
            G  VDQA DG +A+ +AGA  Y ++LMD+QMP +DG QA +AIR   G +A   IVA++A A  E RA+CL AGMDDFL KP+    L + LH  L
Sbjct:  772 GLCVDQAVDGVEAVALAGATTYDLILMDMQMPRLDGLQATRAIRALPGGAA-VPIVAMTANAFAEDRALCLAAGMDDFLAKPVLPERLAETLHRRL 866          
BLAST of mRNA_H-akashiwo_Contig105.8.1 vs. uniprot
Match: A0A084XWF6_9PROT (Signal transduction histidine-protein kinase BarA n=1 Tax=Candidatus Accumulibacter sp. SK-01 TaxID=1457154 RepID=A0A084XWF6_9PROT)

HSP 1 Score: 80.5 bits (197), Expect = 2.490e-16
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 3
Query:   18 GASVDQAYDGRQALEMAGARAYAMVLMDLQMPGMDGYQAAKAIRLSNGPSAKARIVAVSATAETEARAMCLDAGMDDFLMKPLTMVGLKKAL 293
            G  V  A DGR+A+E+ GA  + +VLMD QMP MDGY+A +AIR    P  +  IVA++A A +  R  CL AGMDD+L KP+ +  L + L
Sbjct:   22 GCEVGIAVDGREAVEICGAGDFDLVLMDCQMPEMDGYEATRAIRAREHPGKRVPIVALTANAMSGDRERCLAAGMDDYLAKPIQIEALAEVL 113          
BLAST of mRNA_H-akashiwo_Contig105.8.1 vs. uniprot
Match: A0A848VMF3_9BACT (Response regulator n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A848VMF3_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 5.780e-16
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 3
Query:   18 GASVDQAYDGRQALEMAGARAYAMVLMDLQMPGMDGYQAAKAIRLSNGPSAKARIVAVSATAETEARAMCLDAGMDDFLMKPLTMVGLK 284
            G   D A DG +A+E A    Y  +LMD+QMPG+DG +A + IR   GP+ + RIVA++ATA TE +  CL AGMD ++ KP+ M  LK
Sbjct:  156 GIQADLAKDGGEAIEAAAGNEYDCILMDVQMPGIDGLEATRRIRQDRGPTRRPRIVAMTATATTEDKQECLAAGMDGYISKPVRMEELK 244          
BLAST of mRNA_H-akashiwo_Contig105.8.1 vs. uniprot
Match: UPI001FE7BA2B (PAS domain S-box protein n=1 Tax=Marichromatium bheemlicum TaxID=365339 RepID=UPI001FE7BA2B)

HSP 1 Score: 84.7 bits (208), Expect = 5.940e-16
Identity = 49/92 (53.26%), Postives = 60/92 (65.22%), Query Frame = 3
Query:   18 GASVDQAYDGRQALEMAGARAYAMVLMDLQMPGMDGYQAAKAIRLSNGPSAKARIVAVSATAETEARAMCLDAGMDDFLMKPLTMVGLKKAL 293
            G  VD A DG QAL    AR+YA+VLMD+ MPGMDG +A +AIR      A+  IVA++A A +E R  CLDAGMDD+L KP+    L  AL
Sbjct:  739 GYRVDTATDGHQALAALRARSYALVLMDVSMPGMDGLEATRAIRALPNERARVPIVAMTAGAFSEDRERCLDAGMDDYLSKPVVRAELFAAL 830          
BLAST of mRNA_H-akashiwo_Contig105.8.1 vs. uniprot
Match: UPI00165A0976 (response regulator n=1 Tax=Roseomonas ludipueritiae TaxID=198093 RepID=UPI00165A0976)

HSP 1 Score: 80.5 bits (197), Expect = 7.750e-16
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 3
Query:   18 GASVDQAYDGRQALEMAGARAYAMVLMDLQMPGMDGYQAAKAIRLSNGPSAKARIVAVSATAETEARAMCLDAGMDDFLMKPLTMVGLKKAL 293
            G  V+ A +G +AL  A A AY ++LMDLQMP MDG QA +AIR + GP+   RI+ ++A   TE    C +AGMDD+L KP+    L +AL
Sbjct:   85 GCRVEVASNGAEALARARAEAYDIILMDLQMPVMDGLQATRAIRAAAGPNRATRIIGLTAAVGTEFEQQCREAGMDDYLSKPVQRAVLLRAL 176          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig105.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1PDI6_HETAK6.700e-60100.00Histidine kinase n=1 Tax=Heterosigma akashiwo TaxI... [more]
A0A3M0YPL5_9BACT1.690e-1845.19Response regulator (Fragment) n=1 Tax=Bacteroidete... [more]
UPI001F0BE5A73.150e-1754.22ATP-binding protein n=1 Tax=Rhodovarius crocodyli ... [more]
A0A437MIL3_9PROT6.710e-1754.22Histidine kinase n=1 Tax=Rhodovarius crocodyli Tax... [more]
UPI001F190BCD1.080e-1646.99response regulator n=1 Tax=Rhodovarius lipocyclicu... [more]
A0A495WDK2_9RHOO2.320e-1652.08Histidine kinase n=2 Tax=Azonexus fungiphilus TaxI... [more]
A0A084XWF6_9PROT2.490e-1647.83Signal transduction histidine-protein kinase BarA ... [more]
A0A848VMF3_9BACT5.780e-1648.31Response regulator n=1 Tax=Rhodothermales bacteriu... [more]
UPI001FE7BA2B5.940e-1653.26PAS domain S-box protein n=1 Tax=Marichromatium bh... [more]
UPI00165A09767.750e-1647.83response regulator n=1 Tax=Roseomonas ludipueritia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig105contigH-akashiwo_Contig105:674848..676735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog765910.MARPU_07530
PFAMsCHASE,HAMP,HATPase_c,HisKA,Hpt,MASE1,PAS_3,PAS_9,Response_reg
Model size517
Max annot lvl135613|Chromatiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.03e-13
EggNOG OGsCOG5002@1|root,COG5002@2|Bacteria,1R5EN@1224|Proteobacteria,1T1JE@1236|Gammaproteobacteria,1X2RK@135613|Chromatiales
DescriptionHistidine kinase
Cds size270
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387062.6265986-UTR-H-akashiwo_Contig105:674847..6749091681387062.6265986-UTR-H-akashiwo_Contig105:674847..674909Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig105 674848..674909 +
1681387062.6717355-UTR-H-akashiwo_Contig105:676550..6767351681387062.6717355-UTR-H-akashiwo_Contig105:676550..676735Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig105 676551..676735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387062.6432025-CDS-H-akashiwo_Contig105:674909..6749781681387062.6432025-CDS-H-akashiwo_Contig105:674909..674978Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig105 674910..674978 +
1681387062.6518147-CDS-H-akashiwo_Contig105:675537..6756511681387062.6518147-CDS-H-akashiwo_Contig105:675537..675651Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig105 675538..675651 +
1681387062.661686-CDS-H-akashiwo_Contig105:676463..6765501681387062.661686-CDS-H-akashiwo_Contig105:676463..676550Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig105 676464..676550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig105.8.1prot_H-akashiwo_Contig105.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig105 674910..676550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig105.8.1

>prot_H-akashiwo_Contig105.8.1 ID=prot_H-akashiwo_Contig105.8.1|Name=mRNA_H-akashiwo_Contig105.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=90bp
MAGARAYAMVLMDLQMPGMDGYQAAKAIRLSNGPSAKARIVAVSATAETE
ARAMCLDAGMDDFLMKPLTMVGLKKALHTHLIKASSKKK*
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mRNA from alignment at H-akashiwo_Contig105:674848..676735+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig105.8.1 ID=mRNA_H-akashiwo_Contig105.8.1|Name=mRNA_H-akashiwo_Contig105.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1888bp|location=Sequence derived from alignment at H-akashiwo_Contig105:674848..676735+ (Heterosigma akashiwo CCMP452)
TGGAGCGGCACCTGCCTGGGGCCAGCGTGGACCAGGCCTACGACGGCCGG CAGGCGCTGGAGATGGCGGGCGCCCGGGCGTACGCCATGGTGCTCATGGA CCTGCAGATGCCCGGCATGGACGGCTACCAGGTGTGGTGGCGCACCTACT AACTAGGGGCGGGGGGGGCGGCCTTCTCCTGGGCCCCAACCCTCACCCCT GCCCCCCGCGGTGACGGCGGGGGCGGCTCACCCGCTCTTATTATCGAAGT GCGTGCGTGTGATGAATCTGCGAGGAGGAGGGTGTGCCTGGCGGCGGTCA GCATGCGTTGCTGAGCCGATTCTGTTATCCTTCCTTTCGGTTGGCCATCA GTTGCACTGTTTAAGGGCAACAAGCTTCTCACTGCTACTACAATAGGCAT TTGTATCGTATAGCTAGATAATATTATTGCTGGAGACCAAAAATTCAGGA GTATGATGATGTTTTTCATCGTGCACTACCGCAATATTTTAGCTGCAGCG CCACAAACGGCCGCAGTCCCTGACTGATGGGTTGTGGGTAATGCATTATT ACTTCATCATCCTGCTTTGTCCATTTCTTGATGCCAGTGATATCTGATAA AGTACTAACCCGCCGTATTCTTGTCTGCTGTACTGCTGTGGGATTCAGGC CCCCCTGCTCTGATCCCTGCACCCTTATGACCCCGGTCAGGCGGCCAAAG CTATTCGATTGTCAAATGGGCCCTCCGCTAAGGCACGAATCGTAGCTGTC TCAGCCACCGCTGAGACAGAGGCCCGTGCCATGTGCTTGGATGCCGGGAT GGATGTGGGTCCTCCCGCATATACACAGCCACACTATACCCCTTCCTGCC TGCTTCCCACGTGTTTTGAGATGCTCATTGTAGGGGAAACCACAGAGTAA TCAACTATACTACTACGATGGTAATGAGAAGATTGCATTTGAGTGAACAT GTTCGCGATCACTCTTGTTATTATTTCTGAGTTTTGTGCTGCTTCGTGAT GCGAAGTAAGAAATGCTGAAAACAAGACATGTACAGTGAACTTCGCGATC TTTTGGGGGTTTTGTCACCTCTGGTGGAGTTCTGATGGAGTTTTACTCCT TTCCTTCTTTGGTGTTGATGATGGCTCTGGATATGGTGGAAAAAACCAGT TTTGACAAAGGATCTTTGTTTTATACTGACTTGGCATACCTGCTGTGCAT CATGGTCAGATAGTGGTTCTCTGATTCGTCATCAATTTGGAACTTCTATT CGTACTTTATGACCAATAGGCAATCTTTATTAATACAACCAATGAGCCCT TCAAGACACCTGCTGAGCTTTGATCATTTGTAGATATAGGAGTCACTATG AATGGTTGCCTTGTGTTGCTGGAGGCCCTGCTGCTTATTATATTCTTGTA GCACTCCTGTGACCTTCCTTCTTCCTATTCTGGCCGCCTCTGATCAGGAT GTAGTCTAGAATTTGTTGTGATTAATTGTGTTTTATTTGTTCAACTTGTC TGCTCTGCGCACAAAAGCACGGCGTGGAGAAATCTATTATCTATAGATAT ATTTCTGTGGTATGTATACCGAAATTTATTCCCCTTCTTGGTTTTTACCC TTCCTAAATGTAACAGGATTTTTTGATGAAACCCTTGACAATGGTGGGGC TAAAAAAGGCACTTCACACCCATCTGATTAAAGCCAGCAGCAAAAAAAAG TGATTCAAGTTAAGGGCTGATGAAGAAGTGGGGCAATAACTATCAGCCAT CCATAATGTATTCTACATCATCAGAAAGGGATACAACCCTATCAACAATT TGTTTTTGCTGTCATCAAGCTAAAGTAAGCGATAAGAATTGAACCAATGA TCAATACTACTACTAATTCGTATAATATGCCACCACAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig105:674848..676735+

>mRNA_H-akashiwo_Contig105.8.1 ID=mRNA_H-akashiwo_Contig105.8.1|Name=mRNA_H-akashiwo_Contig105.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=270bp|location=Sequence derived from alignment at H-akashiwo_Contig105:674848..676735+ (Heterosigma akashiwo CCMP452)
ATGGCGGGCGCCCGGGCGTACGCCATGGTGCTCATGGACCTGCAGATGCC
CGGCATGGACGGCTACCAGGCGGCCAAAGCTATTCGATTGTCAAATGGGC
CCTCCGCTAAGGCACGAATCGTAGCTGTCTCAGCCACCGCTGAGACAGAG
GCCCGTGCCATGTGCTTGGATGCCGGGATGGATGATTTTTTGATGAAACC
CTTGACAATGGTGGGGCTAAAAAAGGCACTTCACACCCATCTGATTAAAG
CCAGCAGCAAAAAAAAGTGA
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