mRNA_H-akashiwo_Contig1048.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1048.3.1
Unique NamemRNA_H-akashiwo_Contig1048.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1048.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1048contigH-akashiwo_Contig1048:88417..88790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size232
Hectar predicted targeting categorysignal peptide
Exons2
Cds size126
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.9193974-CDS-H-akashiwo_Contig1048:88416..884521681387061.9193974-CDS-H-akashiwo_Contig1048:88416..88452Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1048 88417..88452 -
1681387061.9284499-CDS-H-akashiwo_Contig1048:88594..886841681387061.9284499-CDS-H-akashiwo_Contig1048:88594..88684Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1048 88595..88684 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.9372613-UTR-H-akashiwo_Contig1048:88684..887901681387061.9372613-UTR-H-akashiwo_Contig1048:88684..88790Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1048 88685..88790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1048.3.1prot_H-akashiwo_Contig1048.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1048 88417..88684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1048.3.1

>prot_H-akashiwo_Contig1048.3.1 ID=prot_H-akashiwo_Contig1048.3.1|Name=mRNA_H-akashiwo_Contig1048.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=42bp
MAIRLKELAMMAWSAALLSFIIGNSLAFQQGVSKISKAQYAT
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mRNA from alignment at H-akashiwo_Contig1048:88417..88790-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1048.3.1 ID=mRNA_H-akashiwo_Contig1048.3.1|Name=mRNA_H-akashiwo_Contig1048.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=374bp|location=Sequence derived from alignment at H-akashiwo_Contig1048:88417..88790- (Heterosigma akashiwo CCMP452)
GTCACTTCTTCTGAATTCCCAAAAGTCAGACGGTTGCGTGGGCTAAGCAA
ACATTTGCTTGGGCTCAGCTTCACCCCCTCATTTGATTAGAGCAAGCTAT
CATCGGATGGCGATTCGCTTGAAAGAATTAGCCATGATGGCATGGTCAGC
AGCATTGCTTTCCTTCATCATCGGGAACTCCCTCGCGTTCCAGCAGGTGT
GTGGCATCATTCAGCCTGAATCTTTCCTGAACAACTACTTTGGTCCTCAA
AACACAGCAGAAGTTTCCGTTCATTGTACGACGGCGAAAACCACATCTCA
GCTTCGATATCTTCCTAACCTATACCTAATTCATTCAGGGCGTCAGCAAA
ATCAGCAAAGCCCAGTATGCCACT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1048:88417..88790-

>mRNA_H-akashiwo_Contig1048.3.1 ID=mRNA_H-akashiwo_Contig1048.3.1|Name=mRNA_H-akashiwo_Contig1048.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=126bp|location=Sequence derived from alignment at H-akashiwo_Contig1048:88417..88790- (Heterosigma akashiwo CCMP452)
ATGGCGATTCGCTTGAAAGAATTAGCCATGATGGCATGGTCAGCAGCATT
GCTTTCCTTCATCATCGGGAACTCCCTCGCGTTCCAGCAGGGCGTCAGCA
AAATCAGCAAAGCCCAGTATGCCACT
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