mRNA_H-akashiwo_Contig1033.8.1 (mRNA) Heterosigma akashiwo CCMP452
Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1033.8.1 vs. uniprot
Match: A0A7S4D8I2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8I2_HETAK) HSP 1 Score: 429 bits (1103), Expect = 1.160e-150 Identity = 221/237 (93.25%), Postives = 222/237 (93.67%), Query Frame = -2 Query: 3 DVVKPLDSSKTSKQLWLVKIPAPVAEQWDTARDGELLGSLTLKKVEGSNKPEFSIEMNNLPTKYSLEQMPDAGSKMLAFSHNDDEVAVDGTVTRAFSLRPLRDAAYHKMCRSRLIKALKPKRTIKPLDDSELRKPGVGAGVNSMFDFSGKGKKRNSADFFGDHKPKKIRLEKAELRSLLFARFGEKEAWTLGELNQELQQPERHLGTCCRRSA*SRRGGLWELKPEYEHG-GAADGD 710 DVVKPLDSSKTSKQLWLVKIPAPVAEQWDTARDGELLGSLTLKKVEGSNKPEFSIEMNNLPTKYSLEQMPDAGSKMLAFSHNDDEVAVDGTVTRAFSLRPLRDAAYHKMCRSRLIKALKPKRTIKPLDDSELRKPGVGAGVNSMFDFSGKGKKRNSADFFGDHKPKKIRLEKAELRSLLFARFGEKEAWTLGELNQELQQPERHLG + R GLWELKPEY AADGD Sbjct: 30 DVVKPLDSSKTSKQLWLVKIPAPVAEQWDTARDGELLGSLTLKKVEGSNKPEFSIEMNNLPTKYSLEQMPDAGSKMLAFSHNDDEVAVDGTVTRAFSLRPLRDAAYHKMCRSRLIKALKPKRTIKPLDDSELRKPGVGAGVNSMFDFSGKGKKRNSADFFGDHKPKKIRLEKAELRSLLFARFGEKEAWTLGELNQELQQPERHLGDLLQEICVKPRRGLWELKPEYRSTVAAADGD 266
BLAST of mRNA_H-akashiwo_Contig1033.8.1 vs. uniprot
Match: UPI00189D0152 (general transcription factor IIF subunit 2-like n=1 Tax=Choloepus didactylus TaxID=27675 RepID=UPI00189D0152) HSP 1 Score: 65.9 bits (159), Expect = 3.090e-9 Identity = 58/248 (23.39%), Postives = 109/248 (43.95%), Query Frame = -2 Query: 12 LDSSKTSKQLWLVKIPAPVAEQWDTARDGELLGSLTLKKVEGSNKPEFSIEMNNLPTKYSLEQMP--------------DAGSKMLAFSHN--DDEVAVDGTVTRAFSLRPLRDAAYHKMCRSRLIKALKPKRTIKPLDDSELRKPGVGAGVNSMFDFSGKGKKRNSADFFGDHKPKKIRLEKAELRSLLFARFGEKEAWTLGELNQELQQPERHLGTCCR----RSA*SRRGGLWELKPEYEHGGAA 695 L+ + + Q+WLVK+P +++QW A LG L + K E S +N T ++ P + G ++L D++++ GTV + RP Y ++ R ++ ++ KP RT++ LD ++ N ++ + KK+ K++R++K ++ ++LF+ F + + + + +L QP +L R+ WELK EY+H AA Sbjct: 9 LEGIRQNNQMWLVKVPKYLSQQWHKASGRGELGKLRI--TNNQRKTELSFTLNEELTNIDIDGQPGPATAPREHQFFLQELGGQILTVLTEGAQDKLSLAGTVVQRMECRPAVGENYMRLKRMQIKESSKPARTVQKLD--KVVTTNYKPVANHHYNIEYEKKKKEDG--------KRVRIDKDQVLTVLFSAFEKHQYYNVKDLVDITGQPVEYLKEILNEIGVRNVKGPHKNTWELKAEYQHYPAA 244
BLAST of mRNA_H-akashiwo_Contig1033.8.1 vs. uniprot
Match: A0A7S2UT40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT40_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 7.960e-8 Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = -2 Query: 507 VKPLDSSKTSKQLWLVKIPAPVAEQWDTARDGELLGSLTLKKVEGSNKPEFSIEMNNLPTKYSLEQ 704 V+PLD S+ +KQLWLVKIP VA++W + + LG LT+ K E P++ I++ +P K S +Q Sbjct: 28 VEPLDVSRQNKQLWLVKIPNRVADEWAKSEENAFLGFLTVVKQEAEEAPKYQIKL--VPQKSSSQQ 91
BLAST of mRNA_H-akashiwo_Contig1033.8.1 vs. uniprot
Match: F2UG76_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UG76_SALR5) HSP 1 Score: 53.9 bits (128), Expect = 4.550e-5 Identity = 55/247 (22.27%), Postives = 101/247 (40.89%), Query Frame = -2 Query: 30 KTSKQLWLVKIPAPVAEQWDTARDGELLGSLTLKKVEGSNKPEFSIEMNN-----------------LPTKYSLEQMPDAG-----SKMLAFSHNDDEVAVD-GTVTRAFSLRPLRDAAYHKMCRSRLIKALKPKRTIKPLDDSELRKPGVGAGVNSMFDFSG--KGKKRNSADFFGDHKPKKIRLEKAELRSLLFARFGEKEAWTLGELNQELQQPERHLGTCCRRSA*SRRGG----LWELKPEY 683 K +++WL++IP P+A W A+DG LG + + + PE +M +P++Y++ Q+P + A + D +A D G++ A +L + A + + R + +D ++ G + + K +KR K R + E++ LLF F + E +TL +L+Q QQP ++L + R A + G W L+ + Sbjct: 10 KAEQEVWLLRIPEPLASAWAAAQDGTRLGEIRVPTDDAEEHPEKRPKMELRADVPLLEEDQKREKRFIPSRYAVRQVPTENLAIFAEEQAALKNEDGTIADDAGSILTAQALGQVTTRADCVIMHGEELDLFIKTRPTELSEDKMTKEASKGMTQDGLLMTQSLIKTQKRERT---------KTRKPEKEVKELLFGLFRKHEYYTLDQLSQLTQQPAQYLASILRTVAVREQSGEHRNKWHLRRAF 247
BLAST of mRNA_H-akashiwo_Contig1033.8.1 vs. uniprot
Match: A0A7R8ZQ50_9CRUS (General transcription factor IIF subunit 2 n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZQ50_9CRUS) HSP 1 Score: 54.3 bits (129), Expect = 5.460e-5 Identity = 50/166 (30.12%), Postives = 79/166 (47.59%), Query Frame = -2 Query: 3 FSHNDDEVAVDGTVTRAFSLRPLRDAAYHKMCRSRLIKALKPKRTIKPLDDSELRKPGVGAGVNSMFDFSGKGKKRNSADFFGDHK----PKKIRLEKAELRSLLFARFGEKEAWTLGELNQELQQPERHLGTC----CRRSA*SRRGGLWELKPEYEHGGAADGD 476 F +++A++G V + RP+ D Y K+ +++KA++P RT + LD VNS S R++ D D K KK R +K + LFA F + + + L +L + +QP +L C + S ++ELKPEY H AA+GD Sbjct: 128 FLPEPEKLALEGRVMQRAECRPIGDNNYMKLKAQQIVKAVQPVRTAQRLDTV----------VNSFKPIS-----RHAHDISHDRKIKEEGKKSREDKDVVLEYLFAAFEKHQYYALKDLVKITKQPVGYLKEILKEVCIYNMKSPHKNMYELKPEYRHYKAAEGD 278 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1033.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1033.8.1 >prot_H-akashiwo_Contig1033.8.1 ID=prot_H-akashiwo_Contig1033.8.1|Name=mRNA_H-akashiwo_Contig1033.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=131bp SSPSAAPPCSYSGFSSHRPPRRLHADLLQQVPRCRSGCCSSWFSSPRVQAback to top mRNA from alignment at H-akashiwo_Contig1033:318696..319406+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1033.8.1 ID=mRNA_H-akashiwo_Contig1033.8.1|Name=mRNA_H-akashiwo_Contig1033.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=711bp|location=Sequence derived from alignment at H-akashiwo_Contig1033:318696..319406+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1033:318696..319406+ >mRNA_H-akashiwo_Contig1033.8.1 ID=mRNA_H-akashiwo_Contig1033.8.1|Name=mRNA_H-akashiwo_Contig1033.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=393bp|location=Sequence derived from alignment at H-akashiwo_Contig1033:318696..319406+ (Heterosigma akashiwo CCMP452)back to top |