mRNA_H-akashiwo_Contig1033.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1033.8.1
Unique NamemRNA_H-akashiwo_Contig1033.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1033.8.1 vs. uniprot
Match: A0A7S4D8I2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8I2_HETAK)

HSP 1 Score: 429 bits (1103), Expect = 1.160e-150
Identity = 221/237 (93.25%), Postives = 222/237 (93.67%), Query Frame = -2
Query:    3 DVVKPLDSSKTSKQLWLVKIPAPVAEQWDTARDGELLGSLTLKKVEGSNKPEFSIEMNNLPTKYSLEQMPDAGSKMLAFSHNDDEVAVDGTVTRAFSLRPLRDAAYHKMCRSRLIKALKPKRTIKPLDDSELRKPGVGAGVNSMFDFSGKGKKRNSADFFGDHKPKKIRLEKAELRSLLFARFGEKEAWTLGELNQELQQPERHLGTCCRRSA*SRRGGLWELKPEYEHG-GAADGD 710
            DVVKPLDSSKTSKQLWLVKIPAPVAEQWDTARDGELLGSLTLKKVEGSNKPEFSIEMNNLPTKYSLEQMPDAGSKMLAFSHNDDEVAVDGTVTRAFSLRPLRDAAYHKMCRSRLIKALKPKRTIKPLDDSELRKPGVGAGVNSMFDFSGKGKKRNSADFFGDHKPKKIRLEKAELRSLLFARFGEKEAWTLGELNQELQQPERHLG   +      R GLWELKPEY     AADGD
Sbjct:   30 DVVKPLDSSKTSKQLWLVKIPAPVAEQWDTARDGELLGSLTLKKVEGSNKPEFSIEMNNLPTKYSLEQMPDAGSKMLAFSHNDDEVAVDGTVTRAFSLRPLRDAAYHKMCRSRLIKALKPKRTIKPLDDSELRKPGVGAGVNSMFDFSGKGKKRNSADFFGDHKPKKIRLEKAELRSLLFARFGEKEAWTLGELNQELQQPERHLGDLLQEICVKPRRGLWELKPEYRSTVAAADGD 266          
BLAST of mRNA_H-akashiwo_Contig1033.8.1 vs. uniprot
Match: UPI00189D0152 (general transcription factor IIF subunit 2-like n=1 Tax=Choloepus didactylus TaxID=27675 RepID=UPI00189D0152)

HSP 1 Score: 65.9 bits (159), Expect = 3.090e-9
Identity = 58/248 (23.39%), Postives = 109/248 (43.95%), Query Frame = -2
Query:   12 LDSSKTSKQLWLVKIPAPVAEQWDTARDGELLGSLTLKKVEGSNKPEFSIEMNNLPTKYSLEQMP--------------DAGSKMLAFSHN--DDEVAVDGTVTRAFSLRPLRDAAYHKMCRSRLIKALKPKRTIKPLDDSELRKPGVGAGVNSMFDFSGKGKKRNSADFFGDHKPKKIRLEKAELRSLLFARFGEKEAWTLGELNQELQQPERHLGTCCR----RSA*SRRGGLWELKPEYEHGGAA 695
            L+  + + Q+WLVK+P  +++QW  A     LG L +       K E S  +N   T   ++  P              + G ++L        D++++ GTV +    RP     Y ++ R ++ ++ KP RT++ LD  ++         N  ++   + KK+           K++R++K ++ ++LF+ F + + + + +L     QP  +L         R+        WELK EY+H  AA
Sbjct:    9 LEGIRQNNQMWLVKVPKYLSQQWHKASGRGELGKLRI--TNNQRKTELSFTLNEELTNIDIDGQPGPATAPREHQFFLQELGGQILTVLTEGAQDKLSLAGTVVQRMECRPAVGENYMRLKRMQIKESSKPARTVQKLD--KVVTTNYKPVANHHYNIEYEKKKKEDG--------KRVRIDKDQVLTVLFSAFEKHQYYNVKDLVDITGQPVEYLKEILNEIGVRNVKGPHKNTWELKAEYQHYPAA 244          
BLAST of mRNA_H-akashiwo_Contig1033.8.1 vs. uniprot
Match: A0A7S2UT40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT40_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.960e-8
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = -2
Query:  507 VKPLDSSKTSKQLWLVKIPAPVAEQWDTARDGELLGSLTLKKVEGSNKPEFSIEMNNLPTKYSLEQ 704
            V+PLD S+ +KQLWLVKIP  VA++W  + +   LG LT+ K E    P++ I++  +P K S +Q
Sbjct:   28 VEPLDVSRQNKQLWLVKIPNRVADEWAKSEENAFLGFLTVVKQEAEEAPKYQIKL--VPQKSSSQQ 91          
BLAST of mRNA_H-akashiwo_Contig1033.8.1 vs. uniprot
Match: F2UG76_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UG76_SALR5)

HSP 1 Score: 53.9 bits (128), Expect = 4.550e-5
Identity = 55/247 (22.27%), Postives = 101/247 (40.89%), Query Frame = -2
Query:   30 KTSKQLWLVKIPAPVAEQWDTARDGELLGSLTLKKVEGSNKPEFSIEMNN-----------------LPTKYSLEQMPDAG-----SKMLAFSHNDDEVAVD-GTVTRAFSLRPLRDAAYHKMCRSRLIKALKPKRTIKPLDDSELRKPGVGAGVNSMFDFSG--KGKKRNSADFFGDHKPKKIRLEKAELRSLLFARFGEKEAWTLGELNQELQQPERHLGTCCRRSA*SRRGG----LWELKPEY 683
            K  +++WL++IP P+A  W  A+DG  LG + +   +    PE   +M                   +P++Y++ Q+P         +  A  + D  +A D G++  A +L  +   A   +     +      R  +  +D   ++   G   + +       K +KR            K R  + E++ LLF  F + E +TL +L+Q  QQP ++L +  R  A   + G     W L+  +
Sbjct:   10 KAEQEVWLLRIPEPLASAWAAAQDGTRLGEIRVPTDDAEEHPEKRPKMELRADVPLLEEDQKREKRFIPSRYAVRQVPTENLAIFAEEQAALKNEDGTIADDAGSILTAQALGQVTTRADCVIMHGEELDLFIKTRPTELSEDKMTKEASKGMTQDGLLMTQSLIKTQKRERT---------KTRKPEKEVKELLFGLFRKHEYYTLDQLSQLTQQPAQYLASILRTVAVREQSGEHRNKWHLRRAF 247          
BLAST of mRNA_H-akashiwo_Contig1033.8.1 vs. uniprot
Match: A0A7R8ZQ50_9CRUS (General transcription factor IIF subunit 2 n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZQ50_9CRUS)

HSP 1 Score: 54.3 bits (129), Expect = 5.460e-5
Identity = 50/166 (30.12%), Postives = 79/166 (47.59%), Query Frame = -2
Query:    3 FSHNDDEVAVDGTVTRAFSLRPLRDAAYHKMCRSRLIKALKPKRTIKPLDDSELRKPGVGAGVNSMFDFSGKGKKRNSADFFGDHK----PKKIRLEKAELRSLLFARFGEKEAWTLGELNQELQQPERHLGTC----CRRSA*SRRGGLWELKPEYEHGGAADGD 476
            F    +++A++G V +    RP+ D  Y K+   +++KA++P RT + LD            VNS    S     R++ D   D K     KK R +K  +   LFA F + + + L +L +  +QP  +L       C  +  S    ++ELKPEY H  AA+GD
Sbjct:  128 FLPEPEKLALEGRVMQRAECRPIGDNNYMKLKAQQIVKAVQPVRTAQRLDTV----------VNSFKPIS-----RHAHDISHDRKIKEEGKKSREDKDVVLEYLFAAFEKHQYYALKDLVKITKQPVGYLKEILKEVCIYNMKSPHKNMYELKPEYRHYKAAEGD 278          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1033.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S4D8I2_HETAK1.160e-15093.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI00189D01523.090e-923.39general transcription factor IIF subunit 2-like n=... [more]
A0A7S2UT40_9STRA7.960e-843.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F2UG76_SALR54.550e-522.27Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A7R8ZQ50_9CRUS5.460e-530.12General transcription factor IIF subunit 2 n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1033contigH-akashiwo_Contig1033:318696..319406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size712
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387057.5124872-CDS-H-akashiwo_Contig1033:318695..3190881681387057.5124872-CDS-H-akashiwo_Contig1033:318695..319088Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1033 318696..319088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387057.521445-UTR-H-akashiwo_Contig1033:319088..3194061681387057.521445-UTR-H-akashiwo_Contig1033:319088..319406Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1033 319089..319406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1033.8.1prot_H-akashiwo_Contig1033.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1033 318696..319088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1033.8.1

>prot_H-akashiwo_Contig1033.8.1 ID=prot_H-akashiwo_Contig1033.8.1|Name=mRNA_H-akashiwo_Contig1033.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=131bp
SSPSAAPPCSYSGFSSHRPPRRLHADLLQQVPRCRSGCCSSWFSSPRVQA
SFSPKRANSRERSSAFSKRIFLGLWSPKKSAEFLFFPLPEKSNIEFTPAP
TPGFLSSESSSGLIVRLGFSALISRLRHIL*
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mRNA from alignment at H-akashiwo_Contig1033:318696..319406+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1033.8.1 ID=mRNA_H-akashiwo_Contig1033.8.1|Name=mRNA_H-akashiwo_Contig1033.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=711bp|location=Sequence derived from alignment at H-akashiwo_Contig1033:318696..319406+ (Heterosigma akashiwo CCMP452)
TCGTCCCCGTCGGCCGCGCCACCGTGCTCGTACTCGGGCTTCAGCTCCCA CAGGCCCCCCCGGCGGCTTCACGCAGATCTCCTGCAGCAAGTCCCCAGGT GCCGCTCGGGCTGCTGCAGCTCCTGGTTCAGCTCGCCGAGGGTCCAGGCC TCCTTTTCCCCGAAGCGGGCGAACAGCAGGGAGCGGAGTTCGGCCTTCTC CAAACGGATTTTCTTGGGCTTGTGGTCGCCAAAAAAGTCAGCTGAATTTC TTTTCTTTCCTTTGCCTGAGAAGTCAAACATAGAATTCACACCAGCACCG ACCCCAGGCTTCCTGAGTTCTGAGTCATCCAGCGGCTTGATTGTGCGCTT GGGTTTCAGCGCCTTGATCAGCCGACTGCGGCACATTTTGTGATAGGCGG CGTCTCTCAGCGGTCGAAGGGAAAAGGCACGCGTGACTGTACCATCCACA GCCACTTCGTCATCATTGTGAGAAAAAGCGAGCATCTTCGATCCAGCGTC AGGCATTTGCTCCAAAGAATACTTTGTCGGAAGATTATTCATTTCGATTG AAAATTCAGGTTTATTGCTGCCCTCGACCTTTTTCAGTGTCAAGCTTCCA AGCAGCTCCCCATCCCTTGCAGTGTCCCATTGTTCTGCAACCGGGGCAGG GATCTTCACTAACCAAAGTTGCTTCGAGGTTTTTGAGCTGTCAAGTGGCT TCACCACATCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1033:318696..319406+

>mRNA_H-akashiwo_Contig1033.8.1 ID=mRNA_H-akashiwo_Contig1033.8.1|Name=mRNA_H-akashiwo_Contig1033.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=393bp|location=Sequence derived from alignment at H-akashiwo_Contig1033:318696..319406+ (Heterosigma akashiwo CCMP452)
TCGTCCCCGTCGGCCGCGCCACCGTGCTCGTACTCGGGCTTCAGCTCCCA
CAGGCCCCCCCGGCGGCTTCACGCAGATCTCCTGCAGCAAGTCCCCAGGT
GCCGCTCGGGCTGCTGCAGCTCCTGGTTCAGCTCGCCGAGGGTCCAGGCC
TCCTTTTCCCCGAAGCGGGCGAACAGCAGGGAGCGGAGTTCGGCCTTCTC
CAAACGGATTTTCTTGGGCTTGTGGTCGCCAAAAAAGTCAGCTGAATTTC
TTTTCTTTCCTTTGCCTGAGAAGTCAAACATAGAATTCACACCAGCACCG
ACCCCAGGCTTCCTGAGTTCTGAGTCATCCAGCGGCTTGATTGTGCGCTT
GGGTTTCAGCGCCTTGATCAGCCGACTGCGGCACATTTTGTGA
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