mRNA_H-akashiwo_Contig1033.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1033.2.1
Unique NamemRNA_H-akashiwo_Contig1033.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1033.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1033contigH-akashiwo_Contig1033:3939..6568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7165.AGAP001398-PA
Preferred nameGLTP
PFAMsGLTP
Model size175
Max annot lvl33208|Metazoa
KEGG koko:K08051
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005215,GO:0005319,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006687,GO:0006807,GO:0006810,GO:0006869,GO:0008150,GO:0008152,GO:0008289,GO:0009987,GO:0010876,GO:0016020,GO:0016043,GO:0017089,GO:0033036,GO:0042802,GO:0044237,GO:0044238,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046836,GO:0051179,GO:0051234,GO:0051861,GO:0061024,GO:0071702,GO:0071704,GO:0071840,GO:0097367,GO:0120009,GO:0120013,GO:1901135,GO:1901264,GO:1901564,GO:1903509
Exons2
Evalue0.000306
EggNOG OGsKOG3221@1|root,KOG3221@2759|Eukaryota,399V8@33154|Opisthokonta,3BERF@33208|Metazoa,3CV85@33213|Bilateria,4202P@6656|Arthropoda,3SP00@50557|Insecta,45352@7147|Diptera,45I62@7148|Nematocera
DescriptionGlycolipid transfer protein (GLTP)
Cds size174
COG categoryG
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387057.4141088-CDS-H-akashiwo_Contig1033:3938..40321681387057.4141088-CDS-H-akashiwo_Contig1033:3938..4032Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1033 3939..4032 -
1681387057.4261484-CDS-H-akashiwo_Contig1033:6488..65681681387057.4261484-CDS-H-akashiwo_Contig1033:6488..6568Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1033 6489..6568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1033.2.1prot_H-akashiwo_Contig1033.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1033 3939..6568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1033.2.1

>prot_H-akashiwo_Contig1033.2.1 ID=prot_H-akashiwo_Contig1033.2.1|Name=mRNA_H-akashiwo_Contig1033.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=58bp
MFKILKNVIDMEKDEESIAHAISTAYRESLQPHHGWIAQHAFQVAFNFLP
TKSVFFSA
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mRNA from alignment at H-akashiwo_Contig1033:3939..6568-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1033.2.1 ID=mRNA_H-akashiwo_Contig1033.2.1|Name=mRNA_H-akashiwo_Contig1033.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2630bp|location=Sequence derived from alignment at H-akashiwo_Contig1033:3939..6568- (Heterosigma akashiwo CCMP452)
ATGTTCAAAATATTGAAAAATGTCATTGACATGGAAAAGGATGAAGAAAG
TATTGCTCATGCAATATCAACAGCTTACAGGTGTGTGTGTGTGTATGTGA
CAGGTCACCATTTTTACAACGCAGGCAATTTCTGTCGCTTGTTAAATGGC
AAAAATAATGACAAAAATGTACGAGCCCCCTTATTCATTCACACAATACC
TGCCACTATCCTCACCACGTCCTGGAATTTTTCCCACTATACTCATTTAT
CCAAGATATTAAGTACAAGCCATGGTTCCCTCAATAAAATGTATAACATA
TTGTATATGTAGTGTTATAGTTGAGGGTAGCAGTGGTTGCAGGAGATGGC
AAAGTGAAGTGGAAGGGTCTGTCTGCTTTTATCAGGGCTCAGCCCCGAAG
GGATTTGAAAGGCTAGACCGTAAACTATGTCTGACACCATCATCATCGAC
ATCGTAATAATGTGAATATATATATTCTGTATATAAAACAAAAGGTAATT
TGGGAAAGACTCGGGTTTGTTCATTCTTTTTTTCTTCTTTTTTACGTTCC
CATACCCTCGTCACGCTCTGATGCACGTCCTCTGTTGTTAAAATAGATAT
CTTGACGTCTGCTCTGGATTAAACATCTGGGGTTGGAGAGGCGTCTCATT
TGCTTCAATAGGCTATAAAACAGTACTGCGTGGGACTTTTTCATTTGGGA
ATCTACCGTGTTGCTAAAAGACAGTGTTGCACAAAATGAGTTGCCGTAGA
CGGTCTATCTGTTGGCCACAAAGGGTTCTTCTTGGGTCATTTTTCCTTAC
CTCAGGCTGTAGTGAAGTGAAACTCAATATTGGTAAAATATCACGTGTTT
TGAACTCACCTGTTTCTCCAAATGGGTATGTATTCGCCAATTTGTATATC
TCTAAGTACTAAGAGGTTTCAAGAGTGCATCTTCGAGCCAAGTTCGATGT
GGGGTTGGCGAAAAAAAAAATCAGGTGCCAAAAGGCCCTGTTCGGTTCCT
GTGGCCGCGTATTTTATAATTTTGGCCAAGGAAGAATGCTGAAATCATTC
AGGTTAGGAAGAAGGGTCTTCGTTTTGGGGGGCGAAACAAGGGTTTCCAC
CATTCGAGACGCACCTGATGAATGAACACCTTAAGTGTATTGCTTTGCTG
AAAGAATTTTTCGCCAATCTGATAACGAAGTGTTCTTTTGGGTGGTGGTT
GCCTTCTTCTGGTGCTGGTGATATGAGGAGTGCTGCTACACGTACGACAT
GCCATAATAAAATTTTATTTTAACATGAATTACAATTCTAAATGGTGTTG
TTGGTGATGGTGACAAATGACGAAGCACAAAGCGACGAAGCCGACTCTTC
TTCCTCTGCTGCTGCTGCTGCTGCTGATCACCACGATACAAATGTTGCCG
AATATTTTTCTAAATATTTATGAAGAGGAAGAAGAAAATGCTACGATTTT
ACGACGAGGCGGACGGCCCCGTGTGTGGCTATGTATATATAATTGTTTTA
GTCCTTGTGCATCGTAACGATGAAAAAGGGAAAGGATTCCTGGCCATTCA
ATTACTCGTTCAATGCATGCCATCAGTGGCTACTTTACTTACATAGTGTA
GTGAAGCATGAGCAATTAGATATGTATATTGCAGGGTGTTGGGTCTAAAC
AGAGAACCGCTTTCAACATCAGTGAGTATAGTTCCACACTGCCAAGAAGG
CAATATGTCAAAGGTTTTTAATCATTAAGTCCATGACAACTATGCTGCAT
TTTGGCTACTACAAGCCACGGCTGGCGGCTCTCTCCATCCTCCGCCAGCC
TTCATCAGGCTGCCTCTGACTAAAATGAAAACACTTTGAAGATGGGGAAT
GAATGAGAGAAGAAGAATGGACAACAACAAAATGAAAGGCTCCGACGCCG
CTGCCACCAGTCACTTGTTGCTCATGTTCCCCAGCTGTTAAGGAAACATT
CTGCCCTCCTTCCCCTCCATGTTCACAACAAATCTGAACATCATCATCAT
AACCGGCACAGGTGCTGGTCACGAGCCTCAGAACAACTAAGGCCTGAGGA
GCTAAGCTCAACTGTTTTATGGTTAGAACTGAATCAGCACACGGACTGGT
CCGCGTACCGAATTGGGGCCACAAGTCGGGTCTTCCTTCAGCCTACCACC
GGGGCTATACAGCCCGCACAAGGACGGGGTTTGTCCCGGTTGATGGATAT
ATATATATATTTATTTGCCTTGCAAAATAAATGAATGATACTCTCCTGCT
CTCTAACTGCCACAATGAATGGTGTACAACCAATAATTATTCCATACTAG
TACACTGTTCAAGCACTTAAGAATGGTGGTAAATTTTAAAAAGGTACAAT
AATATTTATTCCACAATGTATCTTCTTCCCGGGGGGGGGGGGGTATATTG
TGATCAATTTATATATTTCTCTCTATGTATTCCACAAAATATAATATACT
AGTGTATATGTGTGTATATATATATAGAGAGAGAGAGAGAGATTTAGCCA
ACAACAATCTTTTTGGCTACATACAAACATCAACAGGGAATCTCTACAGC
CTCACCATGGTTGGATAGCACAGCATGCATTCCAGGTTGCATTTAATTTT
CTCCCAACTAAGAGCGTATTTTTCAGTGCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1033:3939..6568-

>mRNA_H-akashiwo_Contig1033.2.1 ID=mRNA_H-akashiwo_Contig1033.2.1|Name=mRNA_H-akashiwo_Contig1033.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=174bp|location=Sequence derived from alignment at H-akashiwo_Contig1033:3939..6568- (Heterosigma akashiwo CCMP452)
ATGTTCAAAATATTGAAAAATGTCATTGACATGGAAAAGGATGAAGAAAG
TATTGCTCATGCAATATCAACAGCTTACAGGGAATCTCTACAGCCTCACC
ATGGTTGGATAGCACAGCATGCATTCCAGGTTGCATTTAATTTTCTCCCA
ACTAAGAGCGTATTTTTCAGTGCT
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