mRNA_H-akashiwo_Contig1031.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1031.3.1
Unique NamemRNA_H-akashiwo_Contig1031.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1031.3.1 vs. uniprot
Match: A0A7S3XN34_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN34_HETAK)

HSP 1 Score: 199 bits (506), Expect = 3.360e-62
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 
Query:    4 IDESHQSTKADTSGTAKAIAGSLATLNGAPFDLEDINMIRDAEGQRAFGVPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFLA 297
            IDESHQSTKADTSGTAKAIAGSLATLNGAPFDLEDINMIRDAEGQRAFGVPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFLA
Sbjct:  164 IDESHQSTKADTSGTAKAIAGSLATLNGAPFDLEDINMIRDAEGQRAFGVPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFLA 261
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BLAST of mRNA_H-akashiwo_Contig1031.3.1 vs. uniprot
Match: A0A835ZG43_9STRA (Dihydrodipicolinate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG43_9STRA)

HSP 1 Score: 150 bits (378), Expect = 6.000e-43
Identity = 75/99 (75.76%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:    4 IDESHQSTKADTSGTAKAIAGSLATLNGAPFDLE-DINMIRDAEGQRAFGVPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFLA 297
            I ESHQS+KADTSGTAKA+A   A L GAPFD+E +I MIRDA GQ+AFGVPEEYL GHA+H Y+L S DGT EFQFRHNV GRR+YAEGTADAV+FLA
Sbjct:  160 ITESHQSSKADTSGTAKALANDFAVLTGAPFDVESEITMIRDAPGQKAFGVPEEYLGGHAFHMYSLRSGDGTVEFQFRHNVCGRRMYAEGTADAVEFLA 258
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BLAST of mRNA_H-akashiwo_Contig1031.3.1 vs. uniprot
Match: D8LDG1_ECTSI (Dihydrodipicolinate reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG1_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 2.270e-38
Identity = 67/99 (67.68%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:    1 QIDESHQSTKADTSGTAKAIAGSLATLNGAPFDLEDINMIRDAEGQRAFGVPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFLA 297
            +I ESHQS K DTSGTAKA+A   A L    +D++ IN +RD EGQ AFGVPEE+L GHA+HTY+L S DGT EFQFRHNV GR +YAEGTADAV+FLA
Sbjct:  212 EITESHQSAKVDTSGTAKALAADFAKLTAEDYDVKSINKVRDTEGQLAFGVPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLA 310
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BLAST of mRNA_H-akashiwo_Contig1031.3.1 vs. uniprot
Match: A0A7S2KRY9_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KRY9_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.040e-37
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    1 QIDESHQSTKADTSGTAKAIAGSLATLNGAPFDLE-DINMIRDAEGQRAFGVPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFLA 297
            ++ ESHQ TKADTSGTAKA+ GSL TL+   FDLE DI M+RD E   AFGVPE+ + GHA+HTY L SPDG+ +FQ +HNV+GR VYAEGTADAV+FLA
Sbjct:  217 EVTESHQKTKADTSGTAKAVIGSLKTLSDDDFDLEEDIKMLRDDESSLAFGVPEDAMNGHAFHTYTLTSPDGSVQFQLQHNVSGRTVYAEGTADAVKFLA 316
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BLAST of mRNA_H-akashiwo_Contig1031.3.1 vs. uniprot
Match: A0A7S2AGR2_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2AGR2_9DINO)

HSP 1 Score: 132 bits (332), Expect = 6.680e-37
Identity = 62/99 (62.63%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:    1 QIDESHQSTKADTSGTAKAIAGSLATLNGAPFDLEDINMIRDAEGQRAFGVPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFLA 297
            ++ ESHQS+KADTSGTAKA+  S   L   PF ++ I  +RDAEG +  GVPEE++ GHA+HTY L SPDG+ +FQF+HNV GRR YAEG ADAVQFLA
Sbjct:   82 ELVESHQSSKADTSGTAKAMVASFNQLGVEPFSVDSIEKVRDAEGYKKMGVPEEHVGGHAWHTYTLTSPDGSVQFQFKHNVCGRRTYAEGVADAVQFLA 180
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BLAST of mRNA_H-akashiwo_Contig1031.3.1 vs. uniprot
Match: W7TV95_9STRA (Dihydrodipicolinate reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TV95_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.990e-36
Identity = 67/100 (67.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 QIDESHQSTKADTSGTAKAIAGSLATLNGAPFDLED-INMIRDAEGQRAFGVPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFLA 297
            ++ ESHQS+KADTSGTAKA+  S  TL G P+ +ED I MIRD EGQ  FGVPE  L GHA+HTY L+SPDG+ EFQFRHNV GRR+YAEGT DA+ +LA
Sbjct:  213 RVVESHQSSKADTSGTAKALIASFGTLVGKPYKVEDVIAMIRDREGQLEFGVPEAGLGGHAFHTYQLLSPDGSVEFQFRHNVVGRRIYAEGTVDALTYLA 312
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BLAST of mRNA_H-akashiwo_Contig1031.3.1 vs. uniprot
Match: A0A1Q9CJT0_SYMMI (4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CJT0_SYMMI)

HSP 1 Score: 128 bits (321), Expect = 3.670e-36
Identity = 61/99 (61.62%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:    1 QIDESHQSTKADTSGTAKAIAGSLATLNGAPFDLEDINMIRDAEGQRAFGVPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFLA 297
            ++ ESHQ TKADTSGTAKA+  S   L   PF  E I  +RD   QRAFGVPEE+  GHA+HTY L S DG+ +FQF+HNV GRR Y EG ADAVQF+A
Sbjct:    8 EVTESHQKTKADTSGTAKAMVSSFQGLGVDPFTHEQITQLRDDASQRAFGVPEEFSNGHAFHTYTLTSSDGSVQFQFKHNVCGRRTYGEGVADAVQFIA 106
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BLAST of mRNA_H-akashiwo_Contig1031.3.1 vs. uniprot
Match: A0A813FPG7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FPG7_POLGL)

HSP 1 Score: 132 bits (333), Expect = 3.750e-36
Identity = 61/99 (61.62%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 QIDESHQSTKADTSGTAKAIAGSLATLNGAPFDLEDINMIRDAEGQRAFGVPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFLA 297
            ++ ESHQ TKADTSGTAKA+  S   +    F+++DI M+RD E Q+AFGV EE+L GHA+HTY L S DG+ EFQF+HNV+GRR Y+EG ADAVQF+A
Sbjct:  163 EVTESHQKTKADTSGTAKALVSSFQKMGVDKFEMDDIKMLRDDESQKAFGVSEEHLNGHAWHTYTLKSGDGSVEFQFKHNVSGRRTYSEGVADAVQFIA 261
[Close]
BLAST of mRNA_H-akashiwo_Contig1031.3.1 vs. uniprot
Match: A0A7S2RNZ9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RNZ9_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.840e-35
Identity = 64/98 (65.31%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    4 IDESHQSTKADTSGTAKAIAGSLATLNGAPFDLEDINMIRDAEGQRAFGVPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFLA 297
            + ESHQ TKADTSGTAKAI  SL  L+   F +EDI MIRD E   AFGVPEE + GHA+HTY   SPD + +FQ +HNV GR VYAEGTADAV+FLA
Sbjct:  191 VKESHQKTKADTSGTAKAIVESLTELSDDDFSVEDIEMIRDEEESMAFGVPEESMNGHAFHTYTFTSPDSSVQFQLQHNVVGRTVYAEGTADAVKFLA 288
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BLAST of mRNA_H-akashiwo_Contig1031.3.1 vs. uniprot
Match: A0A7S1BD65_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BD65_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.060e-34
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 QIDESHQSTKADTSGTAKAIAGSLATLNGAPFDLE-DINMIRDAEGQRAFGVPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFL 294
            ++ ESHQ TKADTSGTAKA+ GS+  L+G  FD+E D+NMIRD +   AFGV +E L GHA+HTY L S D + +F  +HNV GR VYAEGTADAV+FL
Sbjct:   26 EVTESHQKTKADTSGTAKAVIGSILELSGDNFDVESDVNMIRDDDKSMAFGVSKEALNGHAFHTYTLTSADASVQFALQHNVEGRTVYAEGTADAVKFL 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1031.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XN34_HETAK3.360e-62100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZG43_9STRA6.000e-4375.76Dihydrodipicolinate reductase n=1 Tax=Tribonema mi... [more]
D8LDG1_ECTSI2.270e-3867.68Dihydrodipicolinate reductase n=1 Tax=Ectocarpus s... [more]
A0A7S2KRY9_9STRA1.040e-3767.00Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A7S2AGR2_9DINO6.680e-3762.63Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
W7TV95_9STRA1.990e-3667.00Dihydrodipicolinate reductase n=2 Tax=Monodopsidac... [more]
A0A1Q9CJT0_SYMMI3.670e-3661.624-hydroxy-tetrahydrodipicolinate reductase 2, chlo... [more]
A0A813FPG7_POLGL3.750e-3661.62Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S2RNZ9_9STRA3.840e-3565.31Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1BD65_9STRA1.060e-3461.62Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1031contigH-akashiwo_Contig1031:278940..280015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDG1
PFAMsDapB_C,DapB_N
Model size297
Max annot lvl2759|Eukaryota
KEGG rclassRC00478
KEGG koko:K00215
KEGG ReactionR04198,R04199
KEGG Pathwayko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00526,M00527
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576
Exons2
Evalue3.72e-39
EggNOG OGs28HEW@1|root,2QPSY@2759|Eukaryota
Ec32 ortholog descriptiondihydrodipicolinate reductase
Ec32 orthologEc-15_000750.1
EC1.17.1.8
Description4-hydroxy-tetrahydrodipicolinate reductase
Cds size297
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387057.286696-CDS-H-akashiwo_Contig1031:278939..2791541681387057.286696-CDS-H-akashiwo_Contig1031:278939..279154Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1031 278940..279154 +
1681387057.2972636-CDS-H-akashiwo_Contig1031:279933..2800151681387057.2972636-CDS-H-akashiwo_Contig1031:279933..280015Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1031 279934..280015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1031.3.1prot_H-akashiwo_Contig1031.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1031 278940..280015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1031.3.1

>prot_H-akashiwo_Contig1031.3.1 ID=prot_H-akashiwo_Contig1031.3.1|Name=mRNA_H-akashiwo_Contig1031.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=99bp
QIDESHQSTKADTSGTAKAIAGSLATLNGAPFDLEDINMIRDAEGQRAFG
VPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFLA
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mRNA from alignment at H-akashiwo_Contig1031:278940..280015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1031.3.1 ID=mRNA_H-akashiwo_Contig1031.3.1|Name=mRNA_H-akashiwo_Contig1031.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1076bp|location=Sequence derived from alignment at H-akashiwo_Contig1031:278940..280015+ (Heterosigma akashiwo CCMP452)
CAGATCGACGAGTCGCACCAGTCCACCAAGGCGGACACGAGCGGCACGGC
CAAGGCCATCGCCGGCTCGCTGGCCACCCTCAACGGCGCGCCCTTTGACT
TGGAGGACATCAACATGATCCGCGACGCGGAAGGGCAGCGGGCCTTCGGC
GTGCCCGAGGAGTACCTCAAGGGCCACGCGTACCACACCTACGCGCTGGT
CTCCCCGGACGGCACGTGAGCGGGGCGCGGCGCCGCCGGCGCGATGGGGG
GGGATAAAAGGAGGGGAAAGTCTCTGGAGGAGAGGAGAGGCATTTTCACG
CCTTGAAGTGAAGTTGAAGCCATGAACTTGAGCACTGTATCATTTCTTCT
TCTTCTTCCTTTTTTGTCTATGTCTAAGCACAAAGTGAAGAAAATAGGTC
AGGCAGGCTATGTACTGCTACCTCTGTCTGCTCATGTCATTTGCATTCTC
ATTTTTTGTCTCGATGAAAAGTTTTTTTCTGTGCCTGGGAGACAACGTGA
CGCTGAAGCTGCTTTCTGAGTGGGATTAAACCCTCCATGTGCTGCTGTCA
AAGAGTTTCATGGTCAGTCAAGGTTGTTCCATATCTCTGGGATCCTTGCT
CTCCGTAGCTCCTCTCTATGTGACCAGGGAGCAGCTCTATTCCCTGTGCA
GCGGACTGGGGCAGCCTTCAGTCGGTGGGCGTGTTGTGGCACCGCCACCA
GCCGTGCTGCTAGAGCCTGCGGTTGTGTAGGAGTTGCCTCCTCTTGGGGT
TTCGAAGCAGAACCATTGCTGTAGGGGAGACATAGCAATGTGTATGGAAT
GTCCATTCATTTCCAGAACAGTCACAAATGTATTGTATCTGTTGCTTCTT
TTATAAATCATCTAAAGTAGTACCATGTGTTTATACAACACTTTTCTTTG
TGGCTGGCAAAGTATTCTTCAATATGTATTTGTTGTGGAGGGGAGGAGCG
CACTTTTAAGCCCCCTCGCCCCGCCCCCACGGCGTGCGTCGCAGGACGGA
GTTCCAGTTCCGGCACAACGTGAACGGCCGGCGCGTGTACGCGGAGGGCA
CGGCCGACGCCGTCCAGTTCCTCGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1031:278940..280015+

>mRNA_H-akashiwo_Contig1031.3.1 ID=mRNA_H-akashiwo_Contig1031.3.1|Name=mRNA_H-akashiwo_Contig1031.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=297bp|location=Sequence derived from alignment at H-akashiwo_Contig1031:278940..280015+ (Heterosigma akashiwo CCMP452)
CAGATCGACGAGTCGCACCAGTCCACCAAGGCGGACACGAGCGGCACGGC
CAAGGCCATCGCCGGCTCGCTGGCCACCCTCAACGGCGCGCCCTTTGACT
TGGAGGACATCAACATGATCCGCGACGCGGAAGGGCAGCGGGCCTTCGGC
GTGCCCGAGGAGTACCTCAAGGGCCACGCGTACCACACCTACGCGCTGGT
CTCCCCGGACGGCACGACGGAGTTCCAGTTCCGGCACAACGTGAACGGCC
GGCGCGTGTACGCGGAGGGCACGGCCGACGCCGTCCAGTTCCTCGCC
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