mRNA_H-akashiwo_Contig1030.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1030.9.1
Unique NamemRNA_H-akashiwo_Contig1030.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1030.9.1 vs. uniprot
Match: A0A443SPK6_9ACAR (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SPK6_9ACAR)

HSP 1 Score: 59.3 bits (142), Expect = 2.390e-8
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 TPLICAAMNGHEAVVRLLIRHGAALHFMPRYFGPA---LHMAVARGHSNIVKELVFAGANVNQRDNQGMTAI 207
            +P++ AA++G+  V+ LLI+ G +     R  G     LH+A A+GH NIVK+L+  GANVN +D +G+TAI
Sbjct:   37 SPILYAAIDGNSFVLDLLIKEGVSFDDTDRPKGALCDPLHVASAKGHLNIVKQLIAYGANVNAKDYRGITAI 108          
BLAST of mRNA_H-akashiwo_Contig1030.9.1 vs. uniprot
Match: A0A8C5QFH0_9ANUR (Ubiquitin-like domain-containing protein n=2 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5QFH0_9ANUR)

HSP 1 Score: 50.4 bits (119), Expect = 3.050e-5
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    7 LICAAMNGHEAVVRLLIRHGAALHFMPRYFGPALHMAVARGHSNIVKELVFAGANVNQRDNQGMTAIDL 213
            L  AA  GH  VVR L+++GA +         ALH+A A+G+ + + EL+  GA     +N G+TA++L
Sbjct:  144 LFIAAHRGHLGVVRFLLKNGANVLAKTPLGNSALHVAAAKGNCDCITELLAHGAQTEDTNNDGVTALEL 212          
BLAST of mRNA_H-akashiwo_Contig1030.9.1 vs. uniprot
Match: UPI000440F689 (ankyrin n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000440F689)

HSP 1 Score: 47.0 bits (110), Expect = 4.070e-5
Identity = 23/61 (37.70%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   25 NGHEAVVRLLIRHGAALHFMPRYFGPALHMAVARGHSNIVKELVFAGANVNQRDNQGMTAI 207
            +G   + R L+   A +  +      ALH+AV+ GH ++ KELV AGA+VN+R+++G+T +
Sbjct:    2 SGSVDIARYLVDQKADIDKVDASGWSALHIAVSAGHEDVTKELVGAGADVNKRNDKGLTPL 62          
BLAST of mRNA_H-akashiwo_Contig1030.9.1 vs. uniprot
Match: UPI001BFDA9BE (ankyrin repeat domain-containing protein n=1 Tax=Polynucleobacter sp. MWH-Aus1W21 TaxID=1855880 RepID=UPI001BFDA9BE)

HSP 1 Score: 49.7 bits (117), Expect = 4.700e-5
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 TPLICAAMNGHEAVVRLLIRHGAALHFMPRYFGPALHMAVARGHSNIVKELVFAGANVNQRDNQGMTAIDL 213
            TPL  A  NGH  + + LI +GA++  + +     L MAV  G+  +VK L+  GA++  R++QG++AID+
Sbjct:  129 TPLHYACANGHLDIAQFLIANGASIDSLSQGNTTPLMMAVQSGNEVLVKLLLDKGADLQLRNSQGLSAIDI 199          
BLAST of mRNA_H-akashiwo_Contig1030.9.1 vs. uniprot
Match: A0A7S2NCL6_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NCL6_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 8.270e-5
Identity = 26/76 (34.21%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    1 TPLICAAMNGHEAVVRLLIRHGAALHFMPRYFG-PALHMAVARGHSNIVKELVFAGANVNQRDNQGMTAIDLNEQF 225
            T L+ AA++G + ++  L+  GA ++F     G  AL  AV  GH+++V++L+ AGA+V +    G TA  L ++ 
Sbjct:  173 TLLVLAAISGQKELISFLLSRGANVNFQSCITGYSALMWAVHEGHTDVVRQLIMAGADVKRHSKHGYTARSLAKKL 248          
BLAST of mRNA_H-akashiwo_Contig1030.9.1 vs. uniprot
Match: UPI001C0D2ECD (ankyrin repeat domain-containing protein n=3 Tax=Polynucleobacter TaxID=44013 RepID=UPI001C0D2ECD)

HSP 1 Score: 48.9 bits (115), Expect = 8.990e-5
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 TPLICAAMNGHEAVVRLLIRHGAALHFMPRYFGPALHMAVARGHSNIVKELVFAGANVNQRDNQGMTAIDL 213
            TPL  A   GH  V + LI +GAA+  + +     L MAV  G+  +VK L+  GA++  R++QG++AID+
Sbjct:  129 TPLHYACARGHLDVAQFLIANGAAIDSLSQGNTTPLMMAVQSGNEVLVKLLLDKGADLQLRNSQGLSAIDI 199          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1030.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A443SPK6_9ACAR2.390e-844.44Serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A8C5QFH0_9ANUR3.050e-537.68Ubiquitin-like domain-containing protein n=2 Tax=L... [more]
UPI000440F6894.070e-537.70ankyrin n=1 Tax=Stereum hirsutum (strain FP-91666)... [more]
UPI001BFDA9BE4.700e-538.03ankyrin repeat domain-containing protein n=1 Tax=P... [more]
A0A7S2NCL6_9EUKA8.270e-534.21Hypothetical protein (Fragment) n=2 Tax=Haptolina ... [more]
UPI001C0D2ECD8.990e-539.44ankyrin repeat domain-containing protein n=3 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1030contigH-akashiwo_Contig1030:316638..316898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog93612.XP_008024889.1
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,NACHT,PNP_UDP_1
Model size261
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.14e-06
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota,38HUR@33154|Opisthokonta,3P113@4751|Fungi,3QJXZ@4890|Ascomycota,201XS@147541|Dothideomycetes
Descriptionand Ankyrin domain protein
Cds size240
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387057.0791984-UTR-H-akashiwo_Contig1030:316637..3166581681387057.0791984-UTR-H-akashiwo_Contig1030:316637..316658Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1030 316638..316658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387057.0905664-CDS-H-akashiwo_Contig1030:316658..3168981681387057.0905664-CDS-H-akashiwo_Contig1030:316658..316898Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1030 316659..316898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1030.9.1prot_H-akashiwo_Contig1030.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1030 316659..316898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1030.9.1

>prot_H-akashiwo_Contig1030.9.1 ID=prot_H-akashiwo_Contig1030.9.1|Name=mRNA_H-akashiwo_Contig1030.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=80bp
MNGHEAVVRLLIRHGAALHFMPRYFGPALHMAVARGHSNIVKELVFAGAN
VNQRDNQGMTAIDLNEQFLAWSMQTDPSTA
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mRNA from alignment at H-akashiwo_Contig1030:316638..316898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1030.9.1 ID=mRNA_H-akashiwo_Contig1030.9.1|Name=mRNA_H-akashiwo_Contig1030.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=261bp|location=Sequence derived from alignment at H-akashiwo_Contig1030:316638..316898+ (Heterosigma akashiwo CCMP452)
ACACCATTAATATGTGCGGCCATGAATGGGCACGAGGCTGTTGTTCGGCT GCTCATTCGCCATGGGGCTGCGTTGCATTTTATGCCCAGGTATTTTGGAC CAGCACTACATATGGCAGTAGCACGTGGCCATTCAAACATTGTGAAGGAA CTTGTTTTTGCTGGAGCAAATGTAAATCAGAGGGATAATCAGGGAATGAC AGCTATCGACTTGAACGAACAGTTCTTGGCCTGGAGCATGCAAACTGATC CTTCAACAGCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1030:316638..316898+

>mRNA_H-akashiwo_Contig1030.9.1 ID=mRNA_H-akashiwo_Contig1030.9.1|Name=mRNA_H-akashiwo_Contig1030.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=240bp|location=Sequence derived from alignment at H-akashiwo_Contig1030:316638..316898+ (Heterosigma akashiwo CCMP452)
ATGAATGGGCACGAGGCTGTTGTTCGGCTGCTCATTCGCCATGGGGCTGC
GTTGCATTTTATGCCCAGGTATTTTGGACCAGCACTACATATGGCAGTAG
CACGTGGCCATTCAAACATTGTGAAGGAACTTGTTTTTGCTGGAGCAAAT
GTAAATCAGAGGGATAATCAGGGAATGACAGCTATCGACTTGAACGAACA
GTTCTTGGCCTGGAGCATGCAAACTGATCCTTCAACAGCG
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