prot_H-akashiwo_Contig1030.6.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig1030.6.1
Unique Nameprot_H-akashiwo_Contig1030.6.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length109
Homology
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BLAST of mRNA_H-akashiwo_Contig1030.6.1 vs. uniprot
Match: A0A7S3Y0B3_HETAK (FACT complex subunit SSRP1 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0B3_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 6.530e-19
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0 
Query:    1 MRIAGERWRGLDAEGKAPWEARAAEGKAAHKVALQEYQDGQKKT 44
            MRIAGERWRGLDAEGKAPWEARAAEGKAAHKVALQEYQDGQKKT
Sbjct:  627 MRIAGERWRGLDAEGKAPWEARAAEGKAAHKVALQEYQDGQKKT 670
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1030.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y0B3_HETAK6.530e-19100.00FACT complex subunit SSRP1 n=2 Tax=Heterosigma aka... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 1..53
e-value: 3.3E-8
score: 35.8
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 1..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..90
NoneNo IPR availableCDDcd00084HMG-boxcoord: 1..34
e-value: 4.37435E-4
score: 34.1316
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 1..38
score: 9.231893

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1030contigH-akashiwo_Contig1030:258778..264922 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1030.6.1mRNA_H-akashiwo_Contig1030.6.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig1030 258741..265130 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig1030.6.1 ID=prot_H-akashiwo_Contig1030.6.1|Name=mRNA_H-akashiwo_Contig1030.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=109bp
MRIAGERWRGLDAEGKAPWEARAAEGKAAHKVALQEYQDGQKKTAAAAAA
AKGGSAAGSDDDDEMLSDDEDEKKISAKGKKKLKDGLPDEEEELLSSDLS
DDDDDDDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom