mRNA_H-akashiwo_Contig1030.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1030.6.1
Unique NamemRNA_H-akashiwo_Contig1030.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1030.6.1 vs. uniprot
Match: A0A7S3Y0B3_HETAK (FACT complex subunit SSRP1 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0B3_HETAK)

HSP 1 Score: 115 bits (287), Expect = 2.680e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 2 
Query:    2 KNDHPEAQAKDIMRIAGERWRGLDAEGKAPWEARAAEGKAAHKVALQEYQDGQKKT 169
            KNDHPEAQAKDIMRIAGERWRGLDAEGKAPWEARAAEGKAAHKVALQEYQDGQKKT
Sbjct:  615 KNDHPEAQAKDIMRIAGERWRGLDAEGKAPWEARAAEGKAAHKVALQEYQDGQKKT 670
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BLAST of mRNA_H-akashiwo_Contig1030.6.1 vs. uniprot
Match: R1G0Y6_EMIHU (HMG box domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1G0Y6_EMIHU)

HSP 1 Score: 50.8 bits (120), Expect = 2.550e-5
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 2 
Query:    2 KNDHPEAQAKDIMRIAGERWRGLDAEGKAPWEARAAEGKAAHKVALQ 142
            K +HP+A+  DI RIAG +W+ +DAE KAPW+ARA   K  ++  ++
Sbjct:   34 KEEHPDAKVTDIGRIAGAKWKEMDAEAKAPWDARAKADKQRYEAEMK 80
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BLAST of mRNA_H-akashiwo_Contig1030.6.1 vs. uniprot
Match: R1DG10_EMIHU (FACT complex subunit SSRP1 n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DG10_EMIHU)

HSP 1 Score: 53.1 bits (126), Expect = 6.600e-5
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 2 
Query:    2 KNDHPEAQAKDIMRIAGERWRGLDAEGKAPWEARAAEGKAAHKVALQEYQDGQK 163
            K +HP+A+  DI RIAG +W+ +DAE KAPW+A+A   K  ++  ++ Y+  Q+
Sbjct:  395 KEEHPDAKVTDIGRIAGAKWKEMDAEAKAPWDAKAKADKERYEAEMKAYKAKQR 448
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1030.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3Y0B3_HETAK2.680e-26100.00FACT complex subunit SSRP1 n=2 Tax=Heterosigma aka... [more]
R1G0Y6_EMIHU2.550e-546.81HMG box domain-containing protein (Fragment) n=1 T... [more]
R1DG10_EMIHU6.600e-542.59FACT complex subunit SSRP1 n=1 Tax=Emiliania huxle... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1030contigH-akashiwo_Contig1030:258741..265130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size572
Hectar predicted targeting categoryother localisation
Exons3
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387056.852461-UTR-H-akashiwo_Contig1030:258740..2587771681387056.852461-UTR-H-akashiwo_Contig1030:258740..258777Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1030 258741..258777 +
1681387056.8935237-UTR-H-akashiwo_Contig1030:264922..2651301681387056.8935237-UTR-H-akashiwo_Contig1030:264922..265130Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1030 264923..265130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387056.862048-CDS-H-akashiwo_Contig1030:258777..2587971681387056.862048-CDS-H-akashiwo_Contig1030:258777..258797Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1030 258778..258797 +
1681387056.871131-CDS-H-akashiwo_Contig1030:259176..2593281681387056.871131-CDS-H-akashiwo_Contig1030:259176..259328Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1030 259177..259328 +
1681387056.8805482-CDS-H-akashiwo_Contig1030:264767..2649221681387056.8805482-CDS-H-akashiwo_Contig1030:264767..264922Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1030 264768..264922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1030.6.1prot_H-akashiwo_Contig1030.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1030 258778..264922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1030.6.1

>prot_H-akashiwo_Contig1030.6.1 ID=prot_H-akashiwo_Contig1030.6.1|Name=mRNA_H-akashiwo_Contig1030.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=109bp
MRIAGERWRGLDAEGKAPWEARAAEGKAAHKVALQEYQDGQKKTAAAAAA
AKGGSAAGSDDDDEMLSDDEDEKKISAKGKKKLKDGLPDEEEELLSSDLS
DDDDDDDA*
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mRNA from alignment at H-akashiwo_Contig1030:258741..265130+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1030.6.1 ID=mRNA_H-akashiwo_Contig1030.6.1|Name=mRNA_H-akashiwo_Contig1030.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=6390bp|location=Sequence derived from alignment at H-akashiwo_Contig1030:258741..265130+ (Heterosigma akashiwo CCMP452)
AAAGAATGATCACCCGGAGGCACAAGCCAAGGACATCATGCGCATTGCCG
GCGAGAGGTAGCATTGCACATGTCCTTACTATGGTGCATCATAGCGCCCC
TGAGCTGCTACACTACTCTAGATGAACTGCAGCTATACACGTATATATAT
ATACATGATACATATATAAACTATCATGGGACAGAAGGCCCAAAAACAGA
CTAAAGAGAGTATAGCTAGATGACTGCAGTAAAAAAAGAACAAACACAAA
ACAGAATGTAAAAGTATCGCGGAGGAGATGAACCCCCTTTCCTGTCTTCC
AACAAATCTCAGCAAAATAAAGTGTTGATGTGTATATATGCAAAATACCC
TAGACTCTTTTTTGGTGCTTGTTGATGTTCCTGAGAATCACGTCACAAAA
CGCGGTGTCCCCATGGGGGGGTTgGGGGGATGGCAGGTGGCGCGGGCTGG
ATGCGGAGGGCAAGGCCCCGTGGGAGGCGCGGGCGGCGGAGGGCAAGGCC
GCCCACAAGGTGGCCCTTCAGGAGTATCAGGACGGCCAGAAGAAAACCGC
CGCCGCCGCCGCCGCCGCCAAGGGGGGCAGCGCTGCCGGTGAGCACCGGA
TGGGCCGGGCCGGGGCGCGGGGGTCTCTGAAGAAAAGGAAGGTGTTGGAC
ACATTTAGTGTGTTGCACATTACTTAAGATAAGCTTGCAGATTAAACCCC
CGGATTGGTGGATATAAGGGGTTCAGCAGCGTTGTTATTAATGGAAGTGC
TGAGCAACAAGCTAGCACGACCGCACAAGGTACATCAGTGGAACACAGAA
AGAAAAGAAAGACAGCATGCTTTCCTTGCTCAAAGCCAGAGAACAGAGTA
TATATTCCTCCCTTACAGTTGAGAGGAGAAAGAAGAAGCACAATAACAAT
ACAGTGGGATGGTAACATATGTAGAAGGAAGAAGAAGAGGATGATCACGA
AGTGCGGCCGCTGCTCCGGCTGATGTCTTCGCCGCTCCTCCAGGCTCCCG
ATTGCGCTTCTTTCGGTGACCAAACAGCCGGACCTACTACACGCGGAGGC
AAAGGGTCATAGACTGATATCCATCAGGCCACCATGGCACATGCTTTACC
TACACTCCCCCAGACTTCATGGAGCCATAGATGCAGTGAAGGCTCATAAA
TGTAAAGCATGCCCAAGCCACTGGGCCACCTGTAGTGCAGCAGCTAAGCA
TGTCAAATCCAACTTGCACTGCCAGTCTGCCAAAAGTGCATAATCACTCT
GTCTGCTCTGGTATCCGTAACCCAATAACCAATAATTCTGCGCTCATAAT
CCCCATCGTCGTGGCCCACGGTCCTGAGGACAACTGGCCCTTTTGAAAAT
CCAGGATCATCAAAGATCCAGTTTACCCATCTCCCCCTGCCAGGCAGGCG
TATGGGAGCACACATGCCGAACAGTCTCCCTCTGCCAGGCAGGCCTCTGG
GCACCTCCTGGTTTCTCCCCCTCTTGCCCGGCACCATGCTGAGCCACTGG
GGGTACATATCGGGATGCGAGGGTTCCGGCCCCAGCACCCATCCTCCCTG
GCTCGCGCTCCGGCAGCCGGCTCCGTCCAGCCAGCTCCGGGCCTCGTCAG
CAGCAGGTTGCTCCCGCGCTGCTCATCATGCCGTCCATGCTTCCGCAGCT
CCTTGAGGATCATCCCCTTGGTTGCCCCGCTGTGCTGCTCCACACTGATT
TTTCTCCAAGGGCAGGACCTCACCCCCCTGCGTGGAGTCATTATCACTCC
CTTGGTGATCACCATCACCATGTATGCTCATAGTAACCTGGCTGACCTCA
TCTGCTGTCTCCTCCTTAGGAGCAGCAGTGCACGACCGTGCGAAGTGGTC
AGGCTCAGAGCATGTCCAGCATTTCACAACTCTGTTGTGCAAAGCACATT
CAGCCTGCAAGTGCCCTAGCTGCCCAAAGCTAGAGCATTTCTTCTTCTTT
TCGCTCACGGCAAACTTCTTTACCGCCTTCTGCAAGTCCATGACTTCGGT
TCTGACTTTGTTGCGCTCCTGTTGCGCATTCAGCAGCCTGTTGAGCATCT
CCTTTTTTTGCTTGAGAAGTTCAGTCTCAGCTTCGATAGCCCGAATTTCA
TTTTCATTCCGTTCAAGATCATTTGCTCTCGACGAAACCACTTTTGCCGA
GGGGAACTCATTCAAAACATCACCGCCCAGCCCAGAGCCAGGTACAGAAA
ATTTCCAAACATCCATATTCCCTTTTCCTTCAATCCTCAACTTAAAATGA
CCTCGCTGCCTCAGTCGCGAATATAGTCAAAAGAAACTTCCATCAATAAT
CTTGGACACATATAGTGTGTTGGACATACATTACCTAAGATAAGCTTGCA
GATTAAACCCCTGGATTGATGTATATATATATATATATATATGAGCAACA
AGCTAGCACGACCGCACAAGGTTTACCAGCGGAACACCGAAAAGAAAGAC
AGCAAGCTTTCCTTGCTCAAAGCTAGAGAACAGAATATTCCTCCCTTGTA
GTTGAGAGGAGAAAGAAGCACAACAGCAATAAAAACAAAATGTGATGATT
ATATATAGAGAGAGAGAGAGCGAGAGAGAGAAGGAAGACCAAGAGGATGA
TCACGAAGTGCGGCCGCTGCTCCTCCAGGCTCCCGAACGTGCTTCTTTTC
GTGGCCAAACAGCCGGCCCTACTACGCGGAGGCAAAGGGTCATAGACTGA
TATCCACCAGGCCACCATGACACCTGCTTTACCAACAGAAGGCATTGGTT
ACTGTTTGGATGTCAAAGATGCCGTGTTCTTGATATGTATATTTTTTTCT
ACTTGGCAGACCTGGCACTGGTCCCAGGCTCTCCCAGATCAATATCTACT
GTAGACAGATGGTTTGATTTTTAATTGATTAGGGAAAACTATCCTGACAA
CAACCCACTCCAAGACGAGTGGTGGTGTGCTGCATTTCACCTATTATTTA
ACGATCATCGGCACTCCGTTGAGTGAACTGATGGGGAAGAGTGAGCTGCT
GGGGAATTTCCCATCAGCTCACTCAGAGGTGTGCCAACGATCATCTAATT
CATGAAATGCAGCATACACACTAGGCAGTGGGATGTTGTTAGGAAAGTTT
TTCCCTAATCACACAATAAAAAGTTAAACCATCTGTCTACAGGAGGTAGT
GATTTGGAAGAGCCTGGGACCAGTATACCAGGTCCGCTCCGTATACCGTC
AAGGCCCTGTGGTAATATATAACCATTAATGGACTAAAACCTAAACATGG
AATCCCAAAACCCGAATCAATACAAAACATACCAACCAAACAGGAATACA
GCACACCCCACTATCTCTGGAAGAGCGTTTGTGCGATCAAAGATTGAGTA
TAGCAGCCTGGCCTACTGGGGAGCAGCAGAAAGCCATTTGAAGAAGCTTG
ATAGAATTCAAGAGAGTGCTGTGGCCCTACTCCGCAACCCTGACCCTTCT
CTACTAcCCCCTTCACTGGAAAGTAGAAGAGAACAAGCTGCCATTGATTC
ACCTGCAAGCTGCTGGGCCGGGCGTGGGCGTGGTATGGCTCGCACCTTGA
CACCAGAGTTTGATGACCCCTCTGCTCCAAAACCTCAGAGATCAGCTCGG
CTGACTGCAACACGCCCACAGCACCTTCACCAACTGAAACCAGTTCATCT
TCCGCCCAACTCCTGGCAACTTTCAAAAGATGCTATAGAGCTAGAATTCC
GGGCATATGGAACGATCTAAGACACCCCGCTCTCCAACAGCAGCATGTAC
AAGAATACCTTCCTCTTAAAAGACAACTGCACACACATGGACGATAATGG
GTAGCGATAGCAACAGTTACAACAAGCAATTTTGTCACTTAAATGCTAAA
ACGTGGGGAAAAAAAAAAAAAAAATCCTAGAATCCCGAGCTCCTACACCT
CTTCCTGGAGCCCCTGGTCCGCAGATCCACCGCTTTGATGAGCGCGGAAC
TGCAAGCGGACACGCATCCAGTTGCTGACCGTTGAGAGAGGCTTCTGAGA
TCCGAGCAGCAATGCGCCTAAGGAAGGCGGGCATGGACTGGTGGGCAAAC
CCTCAACAGTGACTATCAGAAAGTAGCACGGCGCTCTTCCGCAGCAAGGG
ATGGAGGTAGCGATGGCTTGAGGGCGGATTTTGTGGTGAGGGGTGTGTGG
GAACCTGATACGGACTGTCTTTTTGATACCCGCATTATACATGCTGGCAA
CCCTGGACGTGCATCCCAACACATCTCTTACCAGAATGCCCTCAATACCT
CTGCCCGTGAAAAGGTGAGGAGGTACAAGGCTGCTGCGGAAGAGCGCCGT
GCTACTTTCTGCCTCTTGATAGTGACTGTGGAGGGTATTGCCCACCAGTC
CATGCAGGCCTTCCTCAGGCGCATTGCTGCTCGGCTCTCGGCAAAGTGGC
AGAAGCCTCTCTCAGCGGTCAGCAACTGGGTGCGTGTCCGCGCGCAGTTC
GCGCTCATCAAAGTGGTGGATCTGCGGATCAGGGGCTCCAGGAAGAAGAG
GAGGAGCTCGGGGTTCGAGGATGGCGAGGGGATTGCCACTCTCTTCCAGA
GATAGTGGGGTGTGCTGTTTTTGATGTTTTGTATTGATTTGGGTTTTGGG
ATTTCATTTGTAGGTTTTGGTATATTACCACAGGGACATCTGCATAGATG
CAAGGCGAGGTTGTTTTCTTTTAAATTTAACTCTCTCTATCCTGATATAT
ATATATATATATATATATATATATTATAGAGAGAGAGAATCAAAATTTAA
ACAAAACAACCTCACGCCTTGCATCTATGCAGATGTCCCTGTGGTAATAT
ACCAAAAACACATGAAATCCCAAAACCCAAATCAATACAGAACATCAAAT
ACAGCACACCCCACTATCTGGAAGAGAGTGGCAATCCCTCGCCATCCTCG
AACCCCGAGCTCCTCCACCTCTTCCTGGAGCCCCTGGTCCCAGATCCACC
GCTTTGATGAGCGCGAACTGCAAGCGGACACGCACCCAGTTGGTGACCTT
TGAGAGAGGCTTATGCCACTTTGTCGCGAGCCGAGCAGCGATGCGCCTGA
GGAAGGCCTGCAAGGATTGGTGGGCAATACCCTCCACAGTCACTATCAAG
GGGCAGAAAGTAGCACGGCGCTCTTCCGCAGCAGCCTTGTACAACTTCAC
CTTTTCCTGGGCAGAGTATATATGGCAAGCGCTTCTCCACTGATCATGCT
CTCATCTGCATGAAGGGGGGTCTTGTGGGATGGGGCCACAACCAGTTCCG
GGATGTCATGGGGGATTTCAGCCGGGCAGCCTAGAACAACTGCACCTGGG
AGCCGGTGGTGAGGGAGGCGTCGCGGCGGGCCAGGGATGGAGGTAGCGAT
GGCTTGAGGGTGGATTTTGTGGTGAGGGGTGTGTGGGAACCTGATACGGA
CTGTCTTTTTGATACCCGCATTATACATGCTGGCAGCCCTGGACGTGCAT
CCCAACACATCTCTTACCAGAATGCCCTCAATACCTCTGCCCGTGAAAAG
GTGAGGAAGTACAATGCTGCTGCGGAAGAGCGCCGTGCTACTTTCTGCCC
TTTGGTAGTGACTGTGGAGGGTGTTGCCCACCAGTCCATGCAGGCCTTCC
TCAGGCGCATTGCTGCGCGGCTCTCGGCAAAGTGGCAGAAGCCTCTCTCA
GCGGTCAGCAACTGGGTGCGTGTCCGCGTGCAGTTTGCGCTCATCAAAGC
GGTGGATCTGCGAACCAGCGGCCCCAGGAAGAGGTGGAGGAGCTCGGGGT
ACGAGGATGGCGAGGTGTGCTGTATTTGATGTTTTGTATTGATTTGGGTT
TTGGGATTTCATGTGTAGGTTTTGGTATATTACCACAGGGACATCTGCAT
AGATGCAAGGCGTATGTTGTTTTGTTTAAATTTAACTCACTATACAACAT
AATATATATATATAATATATATGTATGCTTGAAACATTAATCATTTAAAT
TGTACAATCCCTTCTTATGATATGTAACTGCTGATGTTTTTTTTTTTTAC
AACATTCTTCATTTACCTCTCAAGCAGGAAGTGATGATGACGATGAGATG
TTGTCTGATGATGAAGACGAAAAGAAGATTAGTGCAAAAGGAAAGAAAAA
GTTGAAAGACGGTTTACCGGACGAAGAGGAGGAACTGTTATCAAGCGACC
TCAGCGATGATGACGACGATGACGATGCTTGAATATTATCATCACCTGTA
ATAACATCTATGCGATCACATATATTATTATTAATTAAAACTTATTTCTT
ATTGTTCCGTTTTCTTTTCTTTTTTTCCATCTTTTACTTGACGGAAGCAT
AGAGGGCAATCTTTTTTGTCTCTCTGTAGTGCCAAGCAGAAGATCATCAT
GATGCTGGTGTGTAATTCCAACAGTTACCCATCCTCCTCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1030:258741..265130+

>mRNA_H-akashiwo_Contig1030.6.1 ID=mRNA_H-akashiwo_Contig1030.6.1|Name=mRNA_H-akashiwo_Contig1030.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=327bp|location=Sequence derived from alignment at H-akashiwo_Contig1030:258741..265130+ (Heterosigma akashiwo CCMP452)
ATGCGCATTGCCGGCGAGAGGTGGCGCGGGCTGGATGCGGAGGGCAAGGC
CCCGTGGGAGGCGCGGGCGGCGGAGGGCAAGGCCGCCCACAAGGTGGCCC
TTCAGGAGTATCAGGACGGCCAGAAGAAAACCGCCGCCGCCGCCGCCGCC
GCCAAGGGGGGCAGCGCTGCCGGAAGTGATGATGACGATGAGATGTTGTC
TGATGATGAAGACGAAAAGAAGATTAGTGCAAAAGGAAAGAAAAAGTTGA
AAGACGGTTTACCGGACGAAGAGGAGGAACTGTTATCAAGCGACCTCAGC
GATGATGACGACGATGACGATGCTTGA
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