mRNA_H-akashiwo_Contig103.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig103.8.1
Unique NamemRNA_H-akashiwo_Contig103.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig103.8.1 vs. uniprot
Match: A0A7S3Y6J3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6J3_HETAK)

HSP 1 Score: 115 bits (288), Expect = 7.810e-31
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = -2 
Query:    3 VLEGGAVGKGIESAVDGTITEAGSKLASECIIPFRTCCREITASLAREVPFTAVACQLLARELV 194
            VLEGGAVGKGIESAVDGTITEAGSKLASE IIPFRTCCREITASLAREVPF AVACQLLARELV
Sbjct:   11 VLEGGAVGKGIESAVDGTITEAGSKLASEGIIPFRTCCREITASLAREVPFAAVACQLLARELV 74
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BLAST of mRNA_H-akashiwo_Contig103.8.1 vs. uniprot
Match: A0A7S3XS28_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS28_HETAK)

HSP 1 Score: 51.6 bits (122), Expect = 1.860e-5
Identity = 40/99 (40.40%), Postives = 48/99 (48.48%), Query Frame = -3 
Query:   74 FQVHTGAWV--IVFLQPP*SEFGTP*VMQG--PRAVAKVELARRSSRVVPWARALRVRLTGRLQKLVPN---------------WPVNASFHSGRAAAR 313
            FQVH G  +  ++ L       G P +  G  PRAVAK   ARRS R+V WARA RVR   R+Q+LVP                W  + SFH   A AR
Sbjct:   19 FQVHAGGDLAGVIVLHNLDWNLGHPRISSGAGPRAVAKGVFARRSGRLVLWARAARVRWKDRIQRLVPKRAVMGPPHLRCRQAGWCWSISFHKHAAFAR 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig103.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3Y6J3_HETAK7.810e-3196.88Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XS28_HETAK1.860e-540.40Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig103contigH-akashiwo_Contig103:668348..668756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size411
Hectar predicted targeting categoryother localisation
Exons1
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387056.2719247-CDS-H-akashiwo_Contig103:668347..6687551681387056.2719247-CDS-H-akashiwo_Contig103:668347..668755Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig103 668348..668755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig103.8.1prot_H-akashiwo_Contig103.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig103 668348..668755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig103.8.1

>prot_H-akashiwo_Contig103.8.1 ID=prot_H-akashiwo_Contig103.8.1|Name=mRNA_H-akashiwo_Contig103.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=136bp
PTSSLASSWQATAVKGTSLASDAVISRQHVLNGMMHSLASLEPASVIVPS
TALSMPLPTAPPSRTFAPTQPWLQPEVPASLRASQIPIKVVVKKLSPMLL
YVLEKHMNALNERCNSSGGTFLLQLCVTGIFKSLQK
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mRNA from alignment at H-akashiwo_Contig103:668348..668756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig103.8.1 ID=mRNA_H-akashiwo_Contig103.8.1|Name=mRNA_H-akashiwo_Contig103.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=409bp|location=Sequence derived from alignment at H-akashiwo_Contig103:668348..668756+ (Heterosigma akashiwo CCMP452)
CCTACCAGCTCCCTGGCCAGCAGCTGGCAGGCCACCGCCGTGAAGGGCAC
CTCCCTGGCCAGCGACGCGGTGATCTCGCGGCAGCACGTCCTGAATGGAA
TGATGCATTCACTGGCCAGTTTGGAACCAGCTTCTGTAATCGTCCCGTCA
ACCGCACTCTCAATGCCCTTGCCCACGGCACCACCCTCGAGGACCTTCGC
GCCAACTCAACCTTGGCTACAGCCCGAGGTCCCTGCATCACTCAGGGCGT
CCCAAATTCCGATCAAGGTGGTTGTAAAAAAACTATCACCCATGCTCCTG
TATGTACTTGAAAAACATATGAATGCCTTGAATGAGCGATGCAACTCCAG
CGGTGGGACTTTTCTTCTCCAGCTATGTGTGACTGGCATTTTCAAATCTC
TTCAAAAGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig103:668348..668756+

>mRNA_H-akashiwo_Contig103.8.1 ID=mRNA_H-akashiwo_Contig103.8.1|Name=mRNA_H-akashiwo_Contig103.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=408bp|location=Sequence derived from alignment at H-akashiwo_Contig103:668348..668756+ (Heterosigma akashiwo CCMP452)
CCTACCAGCTCCCTGGCCAGCAGCTGGCAGGCCACCGCCGTGAAGGGCAC
CTCCCTGGCCAGCGACGCGGTGATCTCGCGGCAGCACGTCCTGAATGGAA
TGATGCATTCACTGGCCAGTTTGGAACCAGCTTCTGTAATCGTCCCGTCA
ACCGCACTCTCAATGCCCTTGCCCACGGCACCACCCTCGAGGACCTTCGC
GCCAACTCAACCTTGGCTACAGCCCGAGGTCCCTGCATCACTCAGGGCGT
CCCAAATTCCGATCAAGGTGGTTGTAAAAAAACTATCACCCATGCTCCTG
TATGTACTTGAAAAACATATGAATGCCTTGAATGAGCGATGCAACTCCAG
CGGTGGGACTTTTCTTCTCCAGCTATGTGTGACTGGCATTTTCAAATCTC
TTCAAAAG
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