mRNA_H-akashiwo_Contig1029.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1029.1.1
Unique NamemRNA_H-akashiwo_Contig1029.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1029.1.1 vs. uniprot
Match: A0A7S3Y1M0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1M0_HETAK)

HSP 1 Score: 109 bits (273), Expect = 6.520e-28
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 SYVRFAPNGKFLLASTLDSTMRLWQTSNPSKCVKTYRGHHANEKYSLSSAFA 156
            SYVRFAPNGKFLLASTLDSTMRLWQTSNPSKCVKTYRGHHANEKYSLSSAFA
Sbjct:  125 SYVRFAPNGKFLLASTLDSTMRLWQTSNPSKCVKTYRGHHANEKYSLSSAFA 176
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BLAST of mRNA_H-akashiwo_Contig1029.1.1 vs. uniprot
Match: A0A7S2AWI0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AWI0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.920e-15
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 SYVRFAPNGKFLLASTLDSTMRLWQTSNPSKCVKTYRGHHANEKYSLSSAFA 156
            SYV+++PNG+F+L STLD T+RLW  SNPS+C+KTYRGHH N ++ + S F+
Sbjct:  217 SYVKYSPNGRFILVSTLDDTIRLWNASNPSRCIKTYRGHH-NRRFCVFSTFS 267
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BLAST of mRNA_H-akashiwo_Contig1029.1.1 vs. uniprot
Match: A0A367IQ57_RHIST (WD repeat-containing protein 5 (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367IQ57_RHIST)

HSP 1 Score: 63.5 bits (153), Expect = 2.120e-11
Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 SYVRFAPNGKFLLASTLDSTMRLWQTSNPSKCVKTYRGHHANEKYSLSSAFA 156
            S+V+F+PNGK++LASTLD+T+RLW   +  KC+KTYRGH  N KY + ++F+
Sbjct:   23 SFVKFSPNGKYILASTLDNTLRLWNY-HTGKCLKTYRGHE-NSKYCIFASFS 72
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BLAST of mRNA_H-akashiwo_Contig1029.1.1 vs. uniprot
Match: D6PJ98_9ZZZZ (GF13915 n=2 Tax=environmental samples TaxID=151659 RepID=D6PJ98_9ZZZZ)

HSP 1 Score: 64.7 bits (156), Expect = 2.640e-11
Identity = 26/52 (50.00%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 SYVRFAPNGKFLLASTLDSTMRLWQTSNPSKCVKTYRGHHANEKYSLSSAFA 156
            S+V+++PNG+++L  TLD  +RLW  SNPS+CVKTY+GH  N  + + S F+
Sbjct:   96 SFVKYSPNGRYILVGTLDDRLRLWNVSNPSRCVKTYQGH-TNRSFCIFSTFS 146
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BLAST of mRNA_H-akashiwo_Contig1029.1.1 vs. uniprot
Match: B3SEK3_TRIAD (Uncharacterized protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3SEK3_TRIAD)

HSP 1 Score: 64.3 bits (155), Expect = 4.700e-11
Identity = 29/52 (55.77%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 SYVRFAPNGKFLLASTLDSTMRLWQTSNPSKCVKTYRGHHANEKYSLSSAFA 156
            S+V+F+PNGK++LA+TLD+T++LW  S   KC+KTYRGH  NEKY + ++F+
Sbjct:  120 SFVKFSPNGKYILAATLDNTLKLWDYSK-GKCLKTYRGHK-NEKYCIFASFS 169
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BLAST of mRNA_H-akashiwo_Contig1029.1.1 vs. uniprot
Match: A0A7S1UKD2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKD2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.390e-10
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    4 YVRFAPNGKFLLASTLDSTMRLWQTSNPSKCVKTYRGHHANEKYSLSSAFA 156
            +VR+ PNG+++L++TLD  +RLW  +NPSKCVK YR +H N KY   S FA
Sbjct:  245 FVRYTPNGRYILSNTLDCKIRLWDCNNPSKCVKLYR-NHVNRKYCCMSDFA 294
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BLAST of mRNA_H-akashiwo_Contig1029.1.1 vs. uniprot
Match: A0A178DP94_9PLEO (WD40 repeat-like protein n=1 Tax=Pyrenochaeta sp. DS3sAY3a TaxID=765867 RepID=A0A178DP94_9PLEO)

HSP 1 Score: 63.9 bits (154), Expect = 1.420e-10
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    7 VRFAPNGKFLLASTLDSTMRLWQ-TSNPSKCVKTYRGHHANEKYSLSSAF 153
            VRF+PNGK++LA TLDS++RLW       KCVKTY+GH ANE++SLS AF
Sbjct:  283 VRFSPNGKYVLAWTLDSSIRLWNYIDGKGKCVKTYQGH-ANERFSLSGAF 331
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BLAST of mRNA_H-akashiwo_Contig1029.1.1 vs. uniprot
Match: A0A6A5XH11_9PLEO (WD40 repeat-like protein n=1 Tax=Aaosphaeria arxii CBS 175.79 TaxID=1450172 RepID=A0A6A5XH11_9PLEO)

HSP 1 Score: 63.2 bits (152), Expect = 2.650e-10
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 VRFAPNGKFLLASTLDSTMRLWQ-TSNPSKCVKTYRGHHANEKYSLSSAF 153
            VRF+PNGK++LA TLDS +RLW       KCVKTY+GH  N+KYSLS AF
Sbjct:  292 VRFSPNGKYILAWTLDSCLRLWNYIDGKGKCVKTYQGH-MNKKYSLSGAF 340
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BLAST of mRNA_H-akashiwo_Contig1029.1.1 vs. uniprot
Match: A0A6A6JCJ9_9PLEO (WD40 repeat-like protein n=1 Tax=Westerdykella ornata TaxID=318751 RepID=A0A6A6JCJ9_9PLEO)

HSP 1 Score: 63.2 bits (152), Expect = 2.650e-10
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 VRFAPNGKFLLASTLDSTMRLWQ-TSNPSKCVKTYRGHHANEKYSLSSAF 153
            VRF+PNGK++LA TLDS +RLW       +CVKTY+GH  NEKYSLS AF
Sbjct:  298 VRFSPNGKYILAWTLDSCIRLWNYIEGKGRCVKTYQGH-LNEKYSLSGAF 346
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BLAST of mRNA_H-akashiwo_Contig1029.1.1 vs. uniprot
Match: UPI0007ACB53F (WD repeat-containing protein 5-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007ACB53F)

HSP 1 Score: 60.5 bits (145), Expect = 2.790e-10
Identity = 28/52 (53.85%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 SYVRFAPNGKFLLASTLDSTMRLWQTSNPSKCVKTYRGHHANEKYSLSSAFA 156
            S+V+F+PNGK++LA+TLD+T++LW  S   KC+KTY GH  NEKY + + F+
Sbjct:   18 SFVKFSPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHK-NEKYCVFANFS 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1029.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y1M0_HETAK6.520e-28100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2AWI0_9STRA7.920e-1559.62Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A367IQ57_RHIST2.120e-1155.77WD repeat-containing protein 5 (Fragment) n=1 Tax=... [more]
D6PJ98_9ZZZZ2.640e-1150.00GF13915 n=2 Tax=environmental samples TaxID=151659... [more]
B3SEK3_TRIAD4.700e-1155.77Uncharacterized protein n=1 Tax=Trichoplax adhaere... [more]
A0A7S1UKD2_9STRA1.390e-1054.90Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A178DP94_9PLEO1.420e-1064.00WD40 repeat-like protein n=1 Tax=Pyrenochaeta sp. ... [more]
A0A6A5XH11_9PLEO2.650e-1064.00WD40 repeat-like protein n=1 Tax=Aaosphaeria arxii... [more]
A0A6A6JCJ9_9PLEO2.650e-1064.00WD40 repeat-like protein n=1 Tax=Westerdykella orn... [more]
UPI0007ACB53F2.790e-1053.85WD repeat-containing protein 5-like n=1 Tax=Sinocy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1029contigH-akashiwo_Contig1029:198880..200396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10228.TriadP51237
Preferred nameWDR5
PFAMsWD40
Model size157
Max annot lvl33208|Metazoa
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000123,GO:0001085,GO:0001501,GO:0001654,GO:0002682,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005737,GO:0005815,GO:0005856,GO:0005929,GO:0006109,GO:0006111,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0007423,GO:0007444,GO:0007482,GO:0007568,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008340,GO:0008757,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010259,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0015630,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022008,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030182,GO:0031175,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0034708,GO:0034968,GO:0035064,GO:0035097,GO:0035216,GO:0035295,GO:0035947,GO:0035948,GO:0036064,GO:0036211,GO:0042054,GO:0042176,GO:0042393,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043412,GO:0043414,GO:0043543,GO:0043687,GO:0043966,GO:0043967,GO:0043981,GO:0043982,GO:0043984,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044545,GO:0044665,GO:0044666,GO:0044782,GO:0045595,GO:0045637,GO:0045652,GO:0045722,GO:0045732,GO:0045862,GO:0045893,GO:0045913,GO:0045935,GO:0045944,GO:0048188,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048666,GO:0048699,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0060255,GO:0060271,GO:0060290,GO:0060429,GO:0061136,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0070925,GO:0071339,GO:0071704,GO:0071840,GO:0080090,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140030,GO:0140034,GO:0140096,GO:1900402,GO:1901564,GO:1901800,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1903706,GO:1990234,GO:2000026,GO:2000058,GO:2000060,GO:2000112,GO:2001141
Exons2
Evalue7.7e-12
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota,38D84@33154|Opisthokonta,3BCYJ@33208|Metazoa
DescriptionWD repeat-containing protein 5
Cds size156
COG categoryS
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387056.0797927-CDS-H-akashiwo_Contig1029:198879..1989891681387056.0797927-CDS-H-akashiwo_Contig1029:198879..198989Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1029 198880..198989 +
1681387056.0891044-CDS-H-akashiwo_Contig1029:200350..2003961681387056.0891044-CDS-H-akashiwo_Contig1029:200350..200396Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1029 200351..200396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1029.1.1prot_H-akashiwo_Contig1029.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1029 198880..200396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1029.1.1

>prot_H-akashiwo_Contig1029.1.1 ID=prot_H-akashiwo_Contig1029.1.1|Name=mRNA_H-akashiwo_Contig1029.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
SYVRFAPNGKFLLASTLDSTMRLWQTSNPSKCVKTYRGHHANEKYSLSSA
FA
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mRNA from alignment at H-akashiwo_Contig1029:198880..200396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1029.1.1 ID=mRNA_H-akashiwo_Contig1029.1.1|Name=mRNA_H-akashiwo_Contig1029.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1517bp|location=Sequence derived from alignment at H-akashiwo_Contig1029:198880..200396+ (Heterosigma akashiwo CCMP452)
TCTTACGTGAGGTTCGCTCCCAACGGCAAGTTTTTGCTTGCGTCAACCTT
GGATAGCACGATGAGGCTGTGGCAAACCTCAAACCCGTCAAAATGTGTGA
AAACGTACAGGTTCGGAACCCTCCCCTGTGGGTATCTGCCTCTACCTTTC
AAGCAGCAACACCAACACCACCTGAAACTCACGGTATATTGGTCATAAAA
TTTGCGATAATCCAAGAGTATAAGTTGGTCCACTGAATATACTGATCAAT
CTCCCTCTTTCCCTCTACCCCCATCCCCCACCCCCACCTACCGAGACAAG
TTCATGACCCCCCATTCCTACCTTTTGAAGCAATAACTCCAGCAGAGACA
CAGAAAAACACGCCACACCCCTTCCCACCTTGTACTTAAAGCACCCCCGA
CATGTTTTCCGATCTCCCCTCTTTAAACGTATGTTTGGGGCGGGCCCACT
TGAAATTACTACCAGCAGATCATGCCTGAGCAGGGGTGTAGGACAGTACC
TTGCCTTTGCCAGTATCTACAGAAGAAAACTTGCCAATTCGTATGGCAAA
GAGAGAGTATTGTGATAGAAGCGGGAAGGGTCTTTTTATGCAGGCTGAAA
TCATCATCATCATAGTGCTGTCATTGTCGCTCAGTGCGTGCCCCCCCCAA
AAAACTCTCCAACAGCAGCGCATCGAGGGTTTCATCCCACTCAGAAAGCA
GCTTAATTGCATTAGAAAAAGAAAGAAAAGAAATACAAAGAAAGAAAAAC
GCAAATGAGCCGAGGTAGTATTATTGTGCTTTCCCATGATGAGTGAGCTG
CGAAGAAAATAGGGGTGGACATATGCTTCAAAGACCTACAGCATACCATT
TTGTAGGGAATTTCATCGAGATTCAAGGAAAATTGTCCATTTTGTCACCA
GCTCATTTTTAGGAGTACATGGCGCCTGGCTTTTGGCCTTCCAGACAGCT
GAGAACGCTTTGAACCACACCCCTGGATAGAGGTGGTACTTATGACTTAT
GCATCCAACTGTACTCTAGGGATGGGTCAGAAACGTTGTCCGCCTGAAGA
TGTGAGGTCACCTATAATATACATATGGGGATATATACCCATATCCACGT
GGGATATTTTGGTCATGGTTCCGCCCACGGAACCTGGTCTCTGTCTCCTC
GTTTGTTTTACTTCCGCATACGGATATATTCGGTCGCTGTCCAATATAAT
GGTTATACCCGTATGCGGAACCATGGCTGCTTTTGCTCAACACCCGAGGA
CGGATATTTTTGGAAAGTCGGAAAAGACATTGACGAGACAGCGACCAATA
CCCGCGGACGGAAATGGCCATATATATCCGCATGCGGAAGCGAAATCGGC
CGATGGGCAGCTCACTTATCATGGGGAAGCACCATATAGCCTAGCTGGAC
CAGTTTCTCCACTTTGTGATTACATGTAGACAAAAGGGAAAAAGCAGCGG
CAGGGGGGCCGCGCGCCGCAGGGGCCACCACGCGAACgaGAAGTACTCGC
TGTCCTCGgcCTTCGCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1029:198880..200396+

>mRNA_H-akashiwo_Contig1029.1.1 ID=mRNA_H-akashiwo_Contig1029.1.1|Name=mRNA_H-akashiwo_Contig1029.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig1029:198880..200396+ (Heterosigma akashiwo CCMP452)
TCTTACGTGAGGTTCGCTCCCAACGGCAAGTTTTTGCTTGCGTCAACCTT
GGATAGCACGATGAGGCTGTGGCAAACCTCAAACCCGTCAAAATGTGTGA
AAACGTACAGGGGCCACCACGCGAACgaGAAGTACTCGCTGTCCTCGgcC
TTCGCG
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