mRNA_H-akashiwo_Contig1027.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1027.2.1
Unique NamemRNA_H-akashiwo_Contig1027.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1027.2.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 502 bits (1292), Expect = 1.650e-177
Identity = 242/280 (86.43%), Postives = 262/280 (93.57%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSPALVSDFKQSLASKYNLTDLEELTQILGIKVVRDKRKKCFYLSQTSFIKDALSKFGLDYLPACKTPMDHTVDLTPTPGFKAELSDANRYRSMVGTLAWVANWTRPELAFSVHKLQRTQNNPEPKHFEAVDHAFRYLKGTQSESLRLSGDLVLRAFTDADFCADRIDGKSATGHVLLLGDAPIIWSSKLQGAVTTSTVEAEYLALRSTVKDIMWLRHLLVDLGCPQQEPTPVVEDNCACIGWANDLVVSKKNRHFHVSYHLAKEQV 840
            MVAVYVDDLVISGSS A+VS+FKQSLASKY+LTD  ELTQILGIKVVRDKR KCF+LSQTSFIKDAL+KFGLDYLPACKTP+DHTVDLTPTPGFKAELSDAN YRSMVGTLAWVANWTRPELAF+VHKLQRTQ NPEPKHFEAV  AFRYLKGTQSESLRL GDLVLRAF+D+DFC DR+DGKS TG++L LGDAPI+WSSKLQGAVTTSTVEAEYLALRS VKDIMWLR LL ++GCPQ EPTPVVEDN AC+ WAND++V+K+NRHFHVSYHLAKEQV
Sbjct:   32 MVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQV 311          
BLAST of mRNA_H-akashiwo_Contig1027.2.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 278 bits (712), Expect = 1.230e-90
Identity = 137/151 (90.73%), Postives = 143/151 (94.70%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSPALVSDFKQSLASKYNLTDLEELTQILGIKVVRDKRKKCFYLSQTSFIKDALSKFGLDYLPACKTPMDHTVDLTPTPGFKAELSDANRYRSMVGTLAWVANWTRPELAFSVHKLQRTQNNPEPKHFEAVDHAFRYL 453
            MVAVYVDDLVISGSS A+VS+FKQSLASKYNLTD  ELTQILGIKVVRDKR KCF+LSQTSFIKDAL+KFGLDYLPACKTP+DHTVDLTPTPGFKAELSDAN YRSMVGTLAWVANWTRPELAF+VHKLQRTQ NPEPKHFEAV  AFRYL
Sbjct:  118 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig1027.2.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 242 bits (618), Expect = 6.230e-70
Identity = 123/282 (43.62%), Postives = 179/282 (63.48%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSPALVSDFKQSLASKYNLTDLEELTQILGIKVVRDKRKKCFYLSQTSFIKDALSKFGLDYLPACKTPMDHTVDLTPTPGFKAELS--DANRYRSMVGTLAWVANWTRPELAFSVHKLQRTQNNPEPKHFEAVDHAFRYLKGTQSESLRLSGDLVLRAFTDADFCADRIDGKSATGHVLLLGDAPIIWSSKLQGAVTTSTVEAEYLALRSTVKDIMWLRHLLVDLGCPQQEPTPVVEDNCACIGWANDLVVSKKNRHFHVSYHLAKEQV 840
            +++VYVDD+V++ S  + +S  K++++  YN++D+ E+  ILGIKV RD+  +   LSQ SFI++A  KF +        P++  +D+         LS  +A ++RS+VGT+ W+A WT PE+A+S+H L +   +P      A  H  RYL  T+ + + L G L L A+ DADFC++R  G+S +G  + LG +PIIWSS++Q  VT +T EAEY++LR+ V D+MWL+ LL  LG  +Q   P+ EDN ACI WAND  VSK  RH HVSYH  KE V
Sbjct:  677 LISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGY-KQGCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMV 957          
BLAST of mRNA_H-akashiwo_Contig1027.2.1 vs. uniprot
Match: A0A146HFR8_MYCCL (Polyprotein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HFR8_MYCCL)

HSP 1 Score: 184 bits (468), Expect = 2.060e-52
Identity = 99/283 (34.98%), Postives = 160/283 (56.54%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSPALVSDFKQSLASKYNLTDLEELTQILGIKVVRDKRKKCFYLSQTSFIKDALSKFGLDYLPACKTPMDHTVDLTPTPGFKAELSDA---NRYRSMVGTLAWVANWTRPELAFSVHKLQRTQNNPEPKHFEAVDHAFRYLKGTQSESLRLSGDLVLRAFTDADFCADRIDGKSATGHVLLLGDAPIIWSSKLQGAVTTSTVEAEYLALRSTVKDIMWLRHLLVDLGCPQQEPTPVVEDNCACIGWANDLVVSKKNRHFHVSYHLAKEQV 840
            +VAV+VDD+ +   +   ++  K  L+SK+ +TDL  L QILG+++ ++       LSQ ++    L   G++   A +TP+D  V LTP       + D    + Y S +G L ++A  TRP+LAF+V  L +    P P+H  A+   FRYL+GT S  +   G   L  F+DAD+  D  D +S +G++  LG +P+ W+S+ Q  V  ST+EAEY+A   T  +I+WLR L  +LG   + PTP+  DN + I +A + +   +++H  + +H  +E+V
Sbjct:   57 IVAVHVDDMTLCARTDEELTQIKGELSSKFKVTDLGPLKQILGMEISQNPTDGSIRLSQANYASRVLESVGMEKANAVQTPLDPNVKLTPLAKGDPRIGDTAFRHGYLSGIGKLMYLAVATRPDLAFAVQHLSQFSIRPGPEHMSALKRVFRYLRGTTSLGIAFRGSGDLHIFSDADWGNDNTDRRSISGYLSFLGASPLSWASRKQPTVALSTMEAEYMAAARTTCEIIWLRQLASELGISVEAPTPIHIDNQSAIKFAENPMFHARSKHIDMRHHFVRERV 339          
BLAST of mRNA_H-akashiwo_Contig1027.2.1 vs. uniprot
Match: A0A5S6QJX2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJX2_TRIMR)

HSP 1 Score: 184 bits (467), Expect = 2.700e-51
Identity = 102/279 (36.56%), Postives = 157/279 (56.27%), Query Frame = 1
Query:    4 VAVYVDDLVISGSSPALVSDFKQSLASKYNLTDLEELTQILGIKVVRDKRKKCFYLSQTSFIKDALSKFGLDYLPACKTPMDHTVDLTPTPGFKAELSDANRYRSMVGTLAWVANWTRPELAFSVHKLQRTQNNPEPKHFEAVDHAFRYLKGTQSESLRLS--GDLVLRAFTDADFCADRIDGKSATGHVLLLGDAPIIWSSKLQGAVTTSTVEAEYLALRSTVKDIMWLRHLLVDLGCPQQEPTPVVEDNCACIGWANDLVVSKKNRHFHVSYHLAKE 834
            V +YVDDL+I+GSSP L  D  + L S + + DL E+ Q LG++V R++    F L Q + ++  L + GL       TPM+    L+ T     +L D   YR  +G+L ++A  TRP+++F+V +L R   +P  + ++AV    RYL G+    LR S  G + L  F DAD+  D+ D KS +G+   +G + + WSS+ Q  V  S+ EAEY+A     +D++W+R +L D+G  Q EPT V EDN  CI  A     +++ +H  + YH  +E
Sbjct:  171 VLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVEREEDGS-FLLYQAAKVRHLLKEHGLLDAKPVATPMEANF-LSSTEEESPKLPDNAEYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRFSANGSIKLSGFVDADWAGDQADRKSTSGYAFKVGTSTVAWSSRKQSFVALSSTEAEYIAASEACRDLLWIRQVLEDIGIEQVEPTIVYEDNQGCIKMAQSERHTRRTKHIDIRYHQLRE 447          
BLAST of mRNA_H-akashiwo_Contig1027.2.1 vs. uniprot
Match: A0A0F7ZQQ7_9HYPO (Integrase catalytic domain-containing protein n=2 Tax=Hirsutella minnesotensis 3608 TaxID=1043627 RepID=A0A0F7ZQQ7_9HYPO)

HSP 1 Score: 187 bits (476), Expect = 2.980e-50
Identity = 106/281 (37.72%), Postives = 154/281 (54.80%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSPALVSDFKQSLASKYNLTDLEELTQILGIKVVRDKRKKCFYLSQTSFIKDALSKFGLDYLPACKTPMDHTVDLTPTPGFKAELSDANRYRSMVGTLAWVANWTRPELAFSVHKLQRTQNNPEPKHFEAVDHAFRYLKGTQSESLRLSGDLV-LRAFTDADFCADRIDGKSATGHVLLLGDAPIIWSSKLQGAVTTSTVEAEYLALRSTVKDIMWLRHLLVDLGCPQQEPTPVVEDNCACIGWANDLVVSKKNRHFHVSYHLAKEQV 840
            ++A+YVDDL+++G+ P  V   K +L+ ++ +TDL   +  LGIKV RD+ ++   LSQ ++IK  L  + +       TPM       P  G+ A   D   Y   VG+L +    TR ++ FSV    R   NP P+H  AV    RYLKGT +  L L G L  ++ +TDADF AD    +S +G    LG A I W+SK Q  VT S+ EAEY+AL  + ++ +WLR L+ DL  PQ  PT + EDN   I  AN+     + +H  + +H  +E+V
Sbjct: 1143 IIAIYVDDLLLTGACPREVQRIKDALSKRFQMTDLGPCSHYLGIKVTRDRARRRIELSQRAYIKKILRTYNMSDCNPADTPMAADPLQPPAEGWHAPPKDQAAYAKRVGSLMYAMLGTRSDICFSVGACCRHLANPTPQHQTAVKRIMRYLKGTINSVLVLEGPLQPIQGYTDADFAADLHTRRSTSGFFYSLGSAAISWTSKRQPCVTLSSTEAEYVALTQSAQEAIWLRSLMKDLCHPQAGPTAIHEDNKGAIDLANNPQHHSRTKHISLKWHFIREKV 1423          
BLAST of mRNA_H-akashiwo_Contig1027.2.1 vs. uniprot
Match: A0A8J4LUU8_9CHLO (Integrase catalytic domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LUU8_9CHLO)

HSP 1 Score: 187 bits (475), Expect = 4.060e-50
Identity = 107/279 (38.35%), Postives = 158/279 (56.63%), Query Frame = 1
Query:    4 VAVYVDDLVISGSSPALVSDFKQSLASKYNLTDLEELTQILGIKVVRDKRKKCFYLSQTSFIKDALSKFGLDYLPACKTPMDHTVDLTPTPGFKAELSDANRYRSMVGTLAWVANWTRPELAFSVHKLQRTQNNPEPKHFEAVDHAFRYLKGTQSESLRLSGDLVLRAFTDADFCADRIDGKSATGHVLLLGDAPIIWSSKLQGAVTTSTVEAEYLALRSTVKDIMWLRHLLVDLGCPQQEPTPVVEDNCACIGWANDLVVSKKNRHFHVSYHLAKEQV 840
            + VYVDDL+I+ +S A+  + K  L S + + DL E    LG ++ RD+  K  ++SQ  F+K+ LSKFG+D       PMD  V L+ + G   + S    Y  +VG+L +++  +RP+++F+V  L R    P   H+ A     RYL  T    ++  G+L L  + D+D  A  +  +S TG+V +LG   I WSSKLQ  V TST EAEY+A  ST+K+ +WLRHLL DLG  +    P+  DN ACI      + S + +H  V +H A+E+V
Sbjct: 1154 ILVYVDDLLIACNSCAIAEEIKSQLRSVFEMRDLGESNFYLGFEIRRDRSAKTLHISQKRFVKELLSKFGMDGANGRSIPMDANVRLS-SDGESLDTS-LFPYSELVGSLLYLSVCSRPDISFAVGALARHMAKPTTDHWCAAKCVLRYLVSTPDVGIKYGGNLSLVGYCDSDL-AGSVGRRSTTGYVFVLGGGAISWSSKLQSTVATSTAEAEYMAAASTIKEALWLRHLLHDLGL-EVTSVPIKCDNRACISMLESPISSARTKHIDVCHHFARERV 1428          
BLAST of mRNA_H-akashiwo_Contig1027.2.1 vs. uniprot
Match: A0A0F8A052_9HYPO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hirsutella minnesotensis 3608 TaxID=1043627 RepID=A0A0F8A052_9HYPO)

HSP 1 Score: 179 bits (455), Expect = 1.080e-49
Identity = 102/278 (36.69%), Postives = 149/278 (53.60%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSPALVSDFKQSLASKYNLTDLEELTQILGIKVVRDKRKKCFYLSQTSFIKDALSKFGLDYLPACKTPMDHTVDLTPTPGFKAELSDANRYRSMVGTLAWVANWTRPELAFSVHKLQRTQNNPEPKHFEAVDHAFRYLKGTQSESLRLSGDLV-LRAFTDADFCADRIDGKSATGHVLLLGDAPIIWSSKLQGAVTTSTVEAEYLALRSTVKDIMWLRHLLVDLGCPQQEPTPVVEDNCACIGWANDLVVSKKNRHFHVSYHLAK 831
            ++A+YVDDL+++G+ P  V   K +L+ ++ +TDL   +  LGIKV RD+ ++   LSQ ++I+  L  + +       TPM       P   + A   D   Y   VG+L +    TR ++ FSV    R   NP P+H  AV    RYLKGT    L L G L  ++ +TDADF AD    +S +G    LG A I W+SK Q  VT S+ EAEY+AL  + ++ +WLR L+ DL  PQ  PT + EDN   I  AN+     + +H  + +H  +
Sbjct:  192 IIAIYVDDLLLTGACPREVQRIKDALSRRFQMTDLGPCSHYLGIKVTRDRARRRIELSQRAYIEKVLRTYNMSDCNPADTPMAADPLQPPAEDWHAHPKDQTAYAKRVGSLMYAMLGTRSDICFSVGACCRYLANPTPQHQTAVKRIMRYLKGTIDSVLVLEGPLQPIQGYTDADFAADLHTRRSTSGFFYSLGSAAISWTSKRQPCVTLSSTEAEYVALTQSAQEAIWLRSLMKDLCHPQAGPTVIHEDNKGSIDLANNPQHHSRTKHISLKWHFIR 469          
BLAST of mRNA_H-akashiwo_Contig1027.2.1 vs. uniprot
Match: A0A1M2VSW8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VSW8_TRAPU)

HSP 1 Score: 179 bits (453), Expect = 1.190e-49
Identity = 105/285 (36.84%), Postives = 163/285 (57.19%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSPALVSDFKQSLASKYNLTDLEELTQILGIKVVRDKRKKCFYLSQTSFIKDALSKFGLDYLPACKTPMDHTVDLTPT--PGFKAELSDANR--YRSMVGTLAWVANWTRPELAFSVHKLQRTQNNPEPKHFEAVDHAFRYLKGTQSESLRLSG-DLVLRAFTDADFCADRIDGKSATGHVLLLGDAPIIWSSKLQGAVTTSTVEAEYLALRSTVKDIMWLRHLLVDLGCPQQEPTPVVEDNCACIGWANDLVVSKKNRHFHVSYHLAKEQV 840
            ++A++VDD +I+GSS  L++++K+ LA+KY LTDL  ++ +LGIKV RD       LSQ ++I+  +++F  D L    TPMD T  L+ +  P   A+++   R  Y+  +G+L + A  TRP++AF+V  L +   NP   H+EAV   FRYL GT++ SL   G    L  + DAD  A +   ++ TG+V L+    I WSSK Q  VT ST E+EY+A     K+ +WLR L+ ++  P  EPT +  D+ + I    D     + +H  + YH  +  +
Sbjct:  118 ILAIHVDDCLITGSSTRLLAEYKRQLAAKYKLTDLGPVSWLLGIKVSRDLSAHTLALSQHAYIEAIITRFNFDDLKPISTPMDPTSQLSKSQCPESAADVARMRRVPYKEAIGSLMYAAMGTRPDIAFAVSTLAQFSQNPGWVHWEAVKRVFRYLLGTKTLSLIYGGGQRGLEGYVDADG-ASQEHRRAITGYVFLVDGGAISWSSKKQELVTLSTAESEYVAATHAAKEAIWLRRLIGEVFRPLSEPTTLHSDSQSAIALTVDGSYHARTKHIDIRYHFIRYSI 401          
BLAST of mRNA_H-akashiwo_Contig1027.2.1 vs. uniprot
Match: A0A6A3VCN8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VCN8_9STRA)

HSP 1 Score: 176 bits (446), Expect = 3.190e-49
Identity = 96/286 (33.57%), Postives = 158/286 (55.24%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSPALVSDFKQSLASKYNLTDLEELTQILGIKVVRDKRKKCFYLSQTSFIKDALSKFGLDYLPACKTPMDHTVDLTPTPGFKAELSDANR----YRSMVGTLAWVANWTRPELAFSVHKLQRTQNNPEPKHFEAVDHAFRYLKGTQSESLRLSGDL--VLRAFTDADFCADRIDGKSATGHVLLLGDAPIIWSSKLQGAVTTSTVEAEYLALRSTVKDIMWLRHLLVDLGCPQQEPTPVVEDNCACIGWANDLVVSKKNRHFHVSYHLAKEQV 840
            +V +YVDD++I+    A+++  K  +A K+ + D+     IL I++  D  ++   +SQ ++ +  + KFG +    C TP++  V LT     + E   A      YRS+VG+L ++A  TRP+++ +V KL R   NP  KH++A     RYL  T+   +   G L   L A++DAD+  +R D +S +G +L+L  AP++W S  Q  V  S+ EAEY+AL   VK+ +W+R LL D+G  Q   T + EDN   +  A ++    + +H  + YH  +E+V
Sbjct:   49 IVRLYVDDMLIASRQKAVIASEKAGIAEKFRIKDMGRARFILSIEIDYDIERRTLGISQKAYTESIIKKFGQENTKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKV 334          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1027.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK1.650e-17786.43Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK1.230e-9090.73Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK6.230e-7043.62Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A146HFR8_MYCCL2.060e-5234.98Polyprotein (Fragment) n=1 Tax=Mycena chlorophos T... [more]
A0A5S6QJX2_TRIMR2.700e-5136.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0F7ZQQ7_9HYPO2.980e-5037.72Integrase catalytic domain-containing protein n=2 ... [more]
A0A8J4LUU8_9CHLO4.060e-5038.35Integrase catalytic domain-containing protein n=2 ... [more]
A0A0F8A052_9HYPO1.080e-4936.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VSW8_TRAPU1.190e-4936.84Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3VCN8_9STRA3.190e-4933.57Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1027contigH-akashiwo_Contig1027:103670..104509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo140614
PFAMsRVT_2,Retrotran_gag_2,rve
Model size840
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.8e-47
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size840
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387055.6638472-CDS-H-akashiwo_Contig1027:103669..1045091681387055.6638472-CDS-H-akashiwo_Contig1027:103669..104509Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1027 103670..104509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1027.2.1prot_H-akashiwo_Contig1027.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1027 103670..104509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1027.2.1

>prot_H-akashiwo_Contig1027.2.1 ID=prot_H-akashiwo_Contig1027.2.1|Name=mRNA_H-akashiwo_Contig1027.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=280bp
MVAVYVDDLVISGSSPALVSDFKQSLASKYNLTDLEELTQILGIKVVRDK
RKKCFYLSQTSFIKDALSKFGLDYLPACKTPMDHTVDLTPTPGFKAELSD
ANRYRSMVGTLAWVANWTRPELAFSVHKLQRTQNNPEPKHFEAVDHAFRY
LKGTQSESLRLSGDLVLRAFTDADFCADRIDGKSATGHVLLLGDAPIIWS
SKLQGAVTTSTVEAEYLALRSTVKDIMWLRHLLVDLGCPQQEPTPVVEDN
CACIGWANDLVVSKKNRHFHVSYHLAKEQV
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mRNA from alignment at H-akashiwo_Contig1027:103670..104509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1027.2.1 ID=mRNA_H-akashiwo_Contig1027.2.1|Name=mRNA_H-akashiwo_Contig1027.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=840bp|location=Sequence derived from alignment at H-akashiwo_Contig1027:103670..104509+ (Heterosigma akashiwo CCMP452)
ATGGTTGCGGTATACGTGGATGATCTCGTCATCAGCGGTAGCTCCCCTGC CCTGGTCTCTGACTTTAAGCAGTCTCTTGCTTCCAAGTACAATCTCACTG ATCTGGAGGAGCTCACCCAGATTTTGGGCATCAAGGTTGTTCGTGACAAA CGCAAGAAGTGCTTCTATCTATCTCAAACTTCCTTCATCAAAGATGCTCT CTCCAAGTTTGGGCTTGACTATCTGCCTGCCTGCAAAACTCCCATGGATC ATACCGTTGATCTCACCCCTACTCCTGGCTTCAAGGCTGAACTCTCTGAT GCTAATCGATACAGGTCTATGGTTGGCACTCTGGCTTGGGTTGCGAACTG GACCAGGCCTGAACTGGCTTTTTCTGTTCATAAACTTCAGCGAACTCAAA ACAACCCTGAACCTAAGCACTTTGAGGCAGTAGATCATGCATTTCGGTAT CTGAAAGGCACCCAGTCTGAAAGCCTGAGGCTCAGTGGTGATCTTGTTCT TCGTGCCTTCACTGATGCAGATTTTTGTGCTGACCGTATTGATGGCAAGT CTGCGACAGGGCATGTTCTTCTTCTTGGTGATGCACCTATCATTTGGTCT TCAAAGCTTCAAGGGGCGGTCACTACCTCCACTGTGGAAGCAGAATACCT TGCTCTCCGCTCAACAGTCAAGGATATTATGTGGCTCAGGCATCTTCTTG TGGATCTTGGCTGTCCTCAGCAAGAGCCTACTCCTGTTGTGGAAGACAAC TGTGCCTGCATTGGATGGGCCAATGACCTAGTAGTCTCCAAAAAGAACAG GCATTTTCATGTGTCCTATCACCTTGCTAAGGAGCAGGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1027:103670..104509+

>mRNA_H-akashiwo_Contig1027.2.1 ID=mRNA_H-akashiwo_Contig1027.2.1|Name=mRNA_H-akashiwo_Contig1027.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=840bp|location=Sequence derived from alignment at H-akashiwo_Contig1027:103670..104509+ (Heterosigma akashiwo CCMP452)
ATGGTTGCGGTATACGTGGATGATCTCGTCATCAGCGGTAGCTCCCCTGC
CCTGGTCTCTGACTTTAAGCAGTCTCTTGCTTCCAAGTACAATCTCACTG
ATCTGGAGGAGCTCACCCAGATTTTGGGCATCAAGGTTGTTCGTGACAAA
CGCAAGAAGTGCTTCTATCTATCTCAAACTTCCTTCATCAAAGATGCTCT
CTCCAAGTTTGGGCTTGACTATCTGCCTGCCTGCAAAACTCCCATGGATC
ATACCGTTGATCTCACCCCTACTCCTGGCTTCAAGGCTGAACTCTCTGAT
GCTAATCGATACAGGTCTATGGTTGGCACTCTGGCTTGGGTTGCGAACTG
GACCAGGCCTGAACTGGCTTTTTCTGTTCATAAACTTCAGCGAACTCAAA
ACAACCCTGAACCTAAGCACTTTGAGGCAGTAGATCATGCATTTCGGTAT
CTGAAAGGCACCCAGTCTGAAAGCCTGAGGCTCAGTGGTGATCTTGTTCT
TCGTGCCTTCACTGATGCAGATTTTTGTGCTGACCGTATTGATGGCAAGT
CTGCGACAGGGCATGTTCTTCTTCTTGGTGATGCACCTATCATTTGGTCT
TCAAAGCTTCAAGGGGCGGTCACTACCTCCACTGTGGAAGCAGAATACCT
TGCTCTCCGCTCAACAGTCAAGGATATTATGTGGCTCAGGCATCTTCTTG
TGGATCTTGGCTGTCCTCAGCAAGAGCCTACTCCTGTTGTGGAAGACAAC
TGTGCCTGCATTGGATGGGCCAATGACCTAGTAGTCTCCAAAAAGAACAG
GCATTTTCATGTGTCCTATCACCTTGCTAAGGAGCAGGTG
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