mRNA_H-akashiwo_Contig1026.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1026.2.1
Unique NamemRNA_H-akashiwo_Contig1026.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1026.2.1 vs. uniprot
Match: A0A7S3PSQ8_9STRA (Calmodulin n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S3PSQ8_9STRA)

HSP 1 Score: 234 bits (597), Expect = 5.250e-77
Identity = 120/147 (81.63%), Postives = 131/147 (89.12%), Query Frame = 1
Query:   13 NQLTEEQIAELKEAFSLFDKDGDGTITTKELGTIMRSLGQNPTEAELADMINEXXXXXXXXXDFPEFLTIMARKMKDTDSEQEILEAFKVYDKDGNGFISAAELRPIMTILGEKLTDEEVDGMIREADIDGDGQINYEVFVRIMMSK 453
            +QLTEEQIAE KEAFSLFDKDGDGTITTKELGT+MRSLGQNPTEAEL DMINE         DFPEFLT+MARKMKDTDSE+EI+EAFKV+DKDGNGFISAAELR +MT LGEKLTD+E D MIREADIDGDGQINYE FV++M+SK
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELNDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIIEAFKVFDKDGNGFISAAELRHVMTNLGEKLTDDECDEMIREADIDGDGQINYEEFVKMMLSK 149          
BLAST of mRNA_H-akashiwo_Contig1026.2.1 vs. uniprot
Match: A0A8K0EE09_BRALA (CALM1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EE09_BRALA)

HSP 1 Score: 231 bits (588), Expect = 1.240e-75
Identity = 122/146 (83.56%), Postives = 130/146 (89.04%), Query Frame = 1
Query:   16 QLTEEQIAELKEAFSLFDKDGDGTITTKELGTIMRSLGQNPTEAELADMINEXXXXXXXXXDFPEFLTIMARKMKDTDSEQEILEAFKVYDKDGNGFISAAELRPIMTILGEKLTDEEVDGMIREADIDGDGQINYEVFVRIMMSK 453
            QLTEEQIAE KEAFSLFDKDGDGTITTKELGT+MRSLGQNPTEAEL DMINE    XX   DFPEFLT+MARKMKDTDSEQEI EAF+V+DKD NGFISAAELR +MT LGEKLTDEEVD MIREADIDGDGQ+NYE FV++M SK
Sbjct:    4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADXXGTIDFPEFLTMMARKMKDTDSEQEIREAFRVFDKDCNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMMTSK 149          
BLAST of mRNA_H-akashiwo_Contig1026.2.1 vs. uniprot
Match: A0A4V1IYQ4_9FUNG (Calmodulin n=2 Tax=Zoopagomycota TaxID=1913638 RepID=A0A4V1IYQ4_9FUNG)

HSP 1 Score: 229 bits (584), Expect = 5.030e-75
Identity = 117/147 (79.59%), Postives = 129/147 (87.76%), Query Frame = 1
Query:   13 NQLTEEQIAELKEAFSLFDKDGDGTITTKELGTIMRSLGQNPTEAELADMINEXXXXXXXXXDFPEFLTIMARKMKDTDSEQEILEAFKVYDKDGNGFISAAELRPIMTILGEKLTDEEVDGMIREADIDGDGQINYEVFVRIMMSK 453
            +QLTEEQIAE KEAFSLFDKDGDGTIT KELGT+MRSLGQNPTEAEL DM+NE         DFPEFLT+MARKMK+TDSE+EI EAFKV+DKD NGFISAAELR +MT LGEKLTDEEVD MIREAD+DGDGQINY+ FV++MMSK
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITAKELGTVMRSLGQNPTEAELQDMVNEVDADGNGTIDFPEFLTMMARKMKNTDSEEEIREAFKVFDKDSNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKMMMSK 149          
BLAST of mRNA_H-akashiwo_Contig1026.2.1 vs. uniprot
Match: F0W7H9_9STRA (Calmodulin n=5 Tax=Albugo TaxID=65356 RepID=F0W7H9_9STRA)

HSP 1 Score: 228 bits (580), Expect = 2.040e-74
Identity = 119/146 (81.51%), Postives = 128/146 (87.67%), Query Frame = 1
Query:   16 QLTEEQIAELKEAFSLFDKDGDGTITTKELGTIMRSLGQNPTEAELADMINEXXXXXXXXXDFPEFLTIMARKMKDTDSEQEILEAFKVYDKDGNGFISAAELRPIMTILGEKLTDEEVDGMIREADIDGDGQINYEVFVRIMMSK 453
            QL+EEQI E KEAFSLFDKDGDGTITTKELGT+MRSLGQNPTEAEL DMINE         DFPEFLT+M+RKMKDTDSE+EILEAFKV+DKD NGFISAAELR IMT LGEKLTDEEVD MIREAD+DGDGQI YE FV++MMSK
Sbjct:    4 QLSEEQICEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMSRKMKDTDSEEEILEAFKVFDKDLNGFISAAELRHIMTNLGEKLTDEEVDEMIREADVDGDGQICYEEFVKMMMSK 149          
BLAST of mRNA_H-akashiwo_Contig1026.2.1 vs. uniprot
Match: A0A3P8WSQ1_CYNSE (Calmodulin n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WSQ1_CYNSE)

HSP 1 Score: 227 bits (579), Expect = 1.630e-73
Identity = 122/147 (82.99%), Postives = 134/147 (91.16%), Query Frame = 1
Query:   13 NQLTEEQIAELKEAFSLFDKDGDGTITTKELGTIMRSLGQNPTEAELADMINEXXXXXXXXXDFPEFLTIMARKMKDTDSEQEILEAFKVYDKDGNGFISAAELRPIMTILGEKLTDEEVDGMIREADIDGDGQINYEVFVRIMMSK 453
            +QLTEEQIAE KEAFSLFDKDGDGTITTKELGT+MRSLGQNPTEAEL DMINE   XXXXX DFPEFLT+MARKMKDTDSE+EI EAF+V+ KDGNG+ISAAELR +MT LGEKLTDEEVD MIREADIDGDGQ+NYE FV++M +K
Sbjct:   55 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAXXXXXIDFPEFLTMMARKMKDTDSEEEIREAFRVFYKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 201          
BLAST of mRNA_H-akashiwo_Contig1026.2.1 vs. uniprot
Match: UPI001CC3B09A (calmodulin-1-like n=1 Tax=Dromiciops gliroides TaxID=33562 RepID=UPI001CC3B09A)

HSP 1 Score: 225 bits (573), Expect = 2.380e-73
Identity = 114/147 (77.55%), Postives = 130/147 (88.44%), Query Frame = 1
Query:   13 NQLTEEQIAELKEAFSLFDKDGDGTITTKELGTIMRSLGQNPTEAELADMINEXXXXXXXXXDFPEFLTIMARKMKDTDSEQEILEAFKVYDKDGNGFISAAELRPIMTILGEKLTDEEVDGMIREADIDGDGQINYEVFVRIMMSK 453
            +QLTEEQIAE KEAFSLFDKDGDGTITTKELGT+MRSLGQNPTEAEL DMINE         DFPEFLT+MARKMKDTDS++EI EAF+V+D+DGNG+ISAA+LR +MT LGEKLTDEEVD MI+EADIDGDGQ+NYE FV++M +K
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSKEEIREAFRVFDQDGNGYISAADLRHVMTNLGEKLTDEEVDEMIQEADIDGDGQVNYEEFVQMMTAK 149          
BLAST of mRNA_H-akashiwo_Contig1026.2.1 vs. uniprot
Match: CALM_WHEAT (Calmodulin n=27 Tax=Mesangiospermae TaxID=1437183 RepID=CALM_WHEAT)

HSP 1 Score: 224 bits (572), Expect = 3.380e-73
Identity = 114/147 (77.55%), Postives = 128/147 (87.07%), Query Frame = 1
Query:   13 NQLTEEQIAELKEAFSLFDKDGDGTITTKELGTIMRSLGQNPTEAELADMINEXXXXXXXXXDFPEFLTIMARKMKDTDSEQEILEAFKVYDKDGNGFISAAELRPIMTILGEKLTDEEVDGMIREADIDGDGQINYEVFVRIMMSK 453
            +QLT+EQIAE KEAFSLFDKDGDG ITTKELGT+MRSLGQNPTEAEL DMINE         DFPEFL +MARKMKDTDSE+E+ EAF+V+DKD +GFISAAELR +MT LGEKLTDEEVD MIREAD+DGDGQINYE FV++MM+K
Sbjct:    3 DQLTDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQDGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149          
BLAST of mRNA_H-akashiwo_Contig1026.2.1 vs. uniprot
Match: A0A183G9L2_HELPZ (Calmodulin n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183G9L2_HELPZ)

HSP 1 Score: 224 bits (572), Expect = 3.380e-73
Identity = 116/147 (78.91%), Postives = 127/147 (86.39%), Query Frame = 1
Query:   13 NQLTEEQIAELKEAFSLFDKDGDGTITTKELGTIMRSLGQNPTEAELADMINEXXXXXXXXXDFPEFLTIMARKMKDTDSEQEILEAFKVYDKDGNGFISAAELRPIMTILGEKLTDEEVDGMIREADIDGDGQINYEVFVRIMMSK 453
            +QLTEEQIAE KEAFSLFDKDGDGTITTKELGT+MRSLGQNPTEAEL DMINE         DFPEFLT+MARKM+DTDSE+EI EAF+V+DK GNGFISAAELR +MT LGEKL DEEVD MIREADIDGDGQ+NYE FV +M +K
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMEDTDSEEEIREAFRVFDKGGNGFISAAELRHVMTNLGEKLPDEEVDEMIREADIDGDGQVNYEEFVTMMTTK 149          
BLAST of mRNA_H-akashiwo_Contig1026.2.1 vs. uniprot
Match: CALM_GLOSP (Calmodulin n=40 Tax=Eukaryota TaxID=2759 RepID=CALM_GLOSP)

HSP 1 Score: 224 bits (571), Expect = 4.800e-73
Identity = 119/147 (80.95%), Postives = 126/147 (85.71%), Query Frame = 1
Query:   13 NQLTEEQIAELKEAFSLFDKDGDGTITTKELGTIMRSLGQNPTEAELADMINEXXXXXXXXXDFPEFLTIMARKMKDTDSEQEILEAFKVYDKDGNGFISAAELRPIMTILGEKLTDEEVDGMIREADIDGDGQINYEVFVRIMMSK 453
            +QLTEEQIAE KEAFSLFDKDGDGTITTKELGT+MRSLGQNPTEAEL DMINE         DFPEFLT+MARKMKDTDSE+EILEAFKV+      FISAAELR IMT LGEKLTDEEVD MIREADIDGDGQINYE FV++MMSK
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFXXXXXXFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149          
BLAST of mRNA_H-akashiwo_Contig1026.2.1 vs. uniprot
Match: A0A197JTC6_9FUNG (EF-hand n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A197JTC6_9FUNG)

HSP 1 Score: 224 bits (570), Expect = 6.820e-73
Identity = 113/147 (76.87%), Postives = 127/147 (86.39%), Query Frame = 1
Query:   13 NQLTEEQIAELKEAFSLFDKDGDGTITTKELGTIMRSLGQNPTEAELADMINEXXXXXXXXXDFPEFLTIMARKMKDTDSEQEILEAFKVYDKDGNGFISAAELRPIMTILGEKLTDEEVDGMIREADIDGDGQINYEVFVRIMMSK 453
            +QLTE Q+AE KEAFSLFDKDGDGTITTKELGT+MRSLGQNPTEA+L DM+NE         DFPEFLT+MARKM DTDSE+EI EAFKV+DKDGNG+ISAAELR ++T LGE+LTD EVD MI EAD+DGDGQINYE FVR+MMSK
Sbjct:    3 DQLTENQLAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEADLQDMVNEVDADGNGTIDFPEFLTMMARKMVDTDSEEEIKEAFKVFDKDGNGYISAAELRHVLTNLGERLTDSEVDEMIHEADVDGDGQINYEEFVRMMMSK 149          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1026.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3PSQ8_9STRA5.250e-7781.63Calmodulin n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7... [more]
A0A8K0EE09_BRALA1.240e-7583.56CALM1 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
A0A4V1IYQ4_9FUNG5.030e-7579.59Calmodulin n=2 Tax=Zoopagomycota TaxID=1913638 Rep... [more]
F0W7H9_9STRA2.040e-7481.51Calmodulin n=5 Tax=Albugo TaxID=65356 RepID=F0W7H9... [more]
A0A3P8WSQ1_CYNSE1.630e-7382.99Calmodulin n=1 Tax=Cynoglossus semilaevis TaxID=24... [more]
UPI001CC3B09A2.380e-7377.55calmodulin-1-like n=1 Tax=Dromiciops gliroides Tax... [more]
CALM_WHEAT3.380e-7377.55Calmodulin n=27 Tax=Mesangiospermae TaxID=1437183 ... [more]
A0A183G9L2_HELPZ3.380e-7378.91Calmodulin n=1 Tax=Heligmosomoides polygyrus TaxID... [more]
CALM_GLOSP4.800e-7380.95Calmodulin n=40 Tax=Eukaryota TaxID=2759 RepID=CAL... [more]
A0A197JTC6_9FUNG6.820e-7376.87EF-hand n=2 Tax=Mortierellaceae TaxID=4854 RepID=A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1026contigH-akashiwo_Contig1026:73218..73673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000020473
PFAMsEF-hand_1
Model size456
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.93e-73
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota,1MARI@121069|Pythiales
DescriptionCalmodulin. Source PGD
Cds size453
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387055.2701201-UTR-H-akashiwo_Contig1026:73217..732201681387055.2701201-UTR-H-akashiwo_Contig1026:73217..73220Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1026 73218..73220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387055.285636-CDS-H-akashiwo_Contig1026:73220..736731681387055.285636-CDS-H-akashiwo_Contig1026:73220..73673Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1026 73221..73673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1026.2.1prot_H-akashiwo_Contig1026.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1026 73221..73673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1026.2.1

>prot_H-akashiwo_Contig1026.2.1 ID=prot_H-akashiwo_Contig1026.2.1|Name=mRNA_H-akashiwo_Contig1026.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=151bp
MAINQLTEEQIAELKEAFSLFDKDGDGTITTKELGTIMRSLGQNPTEAEL
ADMINEVDADGTGTIDFPEFLTIMARKMKDTDSEQEILEAFKVYDKDGNG
FISAAELRPIMTILGEKLTDEEVDGMIREADIDGDGQINYEVFVRIMMSK
*
back to top

mRNA from alignment at H-akashiwo_Contig1026:73218..73673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1026.2.1 ID=mRNA_H-akashiwo_Contig1026.2.1|Name=mRNA_H-akashiwo_Contig1026.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=456bp|location=Sequence derived from alignment at H-akashiwo_Contig1026:73218..73673+ (Heterosigma akashiwo CCMP452)
ACAATGGCGATCAATCAACTTACCGAGGAGCAGATCGCTGAGTTGAAGGA GGCCTTCTCCCTGTTCGATAAGGATGGTGATGGAACCATCACCACCAAGG AGCTCGGTACTATCATGCGATCGTTGGGCCAGAATCCCACCGAAGCTGAG CTCGCCGATATGATTAATGAGGTCGATGCTGATGGCACTGGCACCATTGA TTTCCCTGAGTTCTTGACGATAATGGCGAGAAAGATGAAGGACACCGACT CTGAACAGGAGATCCTCGAGGCTTTCAAGGTGTATGATAAGGATGGCAAC GGTTTCATCAGCGCTGCTGAGCTCAGACCCATCATGACCATCCTTGGTGA GAAGCTCACGGATGAGGAGGTCGATGGAATGATTCGTGAGGCTGATATCG ACGGTGATGGCCAAATCAACTATGAAGTATTTGTGAGGATAATGATGTCC AAGTAA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1026:73218..73673+

>mRNA_H-akashiwo_Contig1026.2.1 ID=mRNA_H-akashiwo_Contig1026.2.1|Name=mRNA_H-akashiwo_Contig1026.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=453bp|location=Sequence derived from alignment at H-akashiwo_Contig1026:73218..73673+ (Heterosigma akashiwo CCMP452)
ATGGCGATCAATCAACTTACCGAGGAGCAGATCGCTGAGTTGAAGGAGGC
CTTCTCCCTGTTCGATAAGGATGGTGATGGAACCATCACCACCAAGGAGC
TCGGTACTATCATGCGATCGTTGGGCCAGAATCCCACCGAAGCTGAGCTC
GCCGATATGATTAATGAGGTCGATGCTGATGGCACTGGCACCATTGATTT
CCCTGAGTTCTTGACGATAATGGCGAGAAAGATGAAGGACACCGACTCTG
AACAGGAGATCCTCGAGGCTTTCAAGGTGTATGATAAGGATGGCAACGGT
TTCATCAGCGCTGCTGAGCTCAGACCCATCATGACCATCCTTGGTGAGAA
GCTCACGGATGAGGAGGTCGATGGAATGATTCGTGAGGCTGATATCGACG
GTGATGGCCAAATCAACTATGAAGTATTTGTGAGGATAATGATGTCCAAG
TAA
back to top