mRNA_H-akashiwo_Contig1021.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1021.3.1
Unique NamemRNA_H-akashiwo_Contig1021.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1021.3.1 vs. uniprot
Match: A0A6H5K1C9_9PHAE (Ribosomal_L18A domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1C9_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 6.350e-95
Identity = 138/176 (78.41%), Postives = 154/176 (87.50%), Query Frame = 1 
Query:    1 MAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTFL 528
            M VMRQYQVVGRKA T  +PNPP+YRMKVF+PNEV   S+FWY MHQMRKMK+TTGEI+D+ E+TEKN  IIKNYGIW++Y+SRSGTHNMYREYRDLTLTGAVDQMYS+MAGRHRCR RSIQIIRTGIVAAKD +RP V Q+  A IKFPL HR+PRA  KK R+TFKASRPTTFL
Sbjct:   29 MVVMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNSRIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSQMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVKQFHSAKIKFPLTHRLPRAPKKKFRTTFKASRPTTFL 204
[Close]
BLAST of mRNA_H-akashiwo_Contig1021.3.1 vs. uniprot
Match: A0A835YZJ5_9STRA (Ribosomal protein L18 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZJ5_9STRA)

HSP 1 Score: 268 bits (686), Expect = 3.020e-89
Identity = 133/176 (75.57%), Postives = 147/176 (83.52%), Query Frame = 1 
Query:    1 MAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTFL 528
            M  MRQYQVVGRKAPT  DPNPP YRMKVF+  +V A S FWY +HQMRKMK+TTGEI+DVNEI EKN  IIK+YGIW++Y+SRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCR RSIQIIRTGIVAAKD +R  V Q+  + IKFPLAHRIPR  +KK R+ FKA RP TF 
Sbjct:   32 MPPMRQYQVVGRKAPTEADPNPPAYRMKVFAATKVGAISSFWYLIHQMRKMKKTTGEILDVNEIVEKNARIIKHYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRAPVKQFQNSQIKFPLAHRIPREPSKKFRTVFKAQRPNTFF 207
[Close]
BLAST of mRNA_H-akashiwo_Contig1021.3.1 vs. uniprot
Match: A0A1V9Z1Q2_9STRA (60S ribosomal protein L18a n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1Q2_9STRA)

HSP 1 Score: 264 bits (675), Expect = 4.980e-88
Identity = 122/175 (69.71%), Postives = 151/175 (86.29%), Query Frame = 1 
Query:    1 MAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 525
            M  + QYQVVGRKAPT TDPNPP +RMK+F+PNEV+A+SRFWYF+HQM+KMK+TTGEI+ +NE+ EKN  I+KNYGIWI+YNSRSGTHNMY+EYR +TL GAV+QMY+E+AGRHR R RSIQI+RT I+AAKD ++P  +QY  ++IKFPL+HR+PR A K  R+ FKASRPTTF
Sbjct:    1 MPAIHQYQVVGRKAPTETDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILQINELREKNKRIVKNYGIWIRYNSRSGTHNMYKEYRGVTLCGAVEQMYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYHDSNIKFPLSHRVPRPATKNQRTVFKASRPTTF 175
[Close]
BLAST of mRNA_H-akashiwo_Contig1021.3.1 vs. uniprot
Match: A0A7S2XX70_9STRA (60S ribosomal protein L18a n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX70_9STRA)

HSP 1 Score: 263 bits (673), Expect = 9.710e-88
Identity = 125/172 (72.67%), Postives = 150/172 (87.21%), Query Frame = 1 
Query:   10 MRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 525
            MRQYQVVGRKAPTA +P PPL RMK+F+ N V A+SRFWYF+HQMRKMK+TTGEIVDVNEITEKN  ++KNYGIWI+YNSRSGTHNM+RE+RDL LTGAVDQ+Y+EM+GRHR RF S+QIIRT ++ AKD +RP + QY  + IKFPL H+I RA AKK+R+TFKA+RPTT+
Sbjct:    3 MRQYQVVGRKAPTAAEPKPPLLRMKLFARNPVQAQSRFWYFIHQMRKMKKTTGEIVDVNEITEKNSRVVKNYGIWIRYNSRSGTHNMFREFRDLKLTGAVDQLYAEMSGRHRARFSSVQIIRTAVLDAKDCKRPNITQYHDSKIKFPLTHQIRRAPAKKHRTTFKATRPTTY 174
[Close]
BLAST of mRNA_H-akashiwo_Contig1021.3.1 vs. uniprot
Match: T0R8B2_SAPDV (60S ribosomal protein L18a n=7 Tax=Saprolegniaceae TaxID=4764 RepID=T0R8B2_SAPDV)

HSP 1 Score: 261 bits (667), Expect = 8.240e-87
Identity = 121/175 (69.14%), Postives = 151/175 (86.29%), Query Frame = 1 
Query:    1 MAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 525
            M  + QYQVVGRKAPT +DPNPP +RMK+F+PNEV+A+SRFWYF+HQM+KMK+TTGEI+ +NE+ EKN  I+KNYG+WI+YNSRSGTHNMY+EYRD+TL GAV+QMY+E+AGRHR R RSIQI+RT I+AAKD ++P  +QY  + IKFPL+HR+PR A K  R+ FKASRPTTF
Sbjct:    1 MPAIHQYQVVGRKAPTESDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILCLNELREKNKRIVKNYGVWIRYNSRSGTHNMYKEYRDVTLCGAVEQMYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYHDSAIKFPLSHRVPRPANKNQRTVFKASRPTTF 175
[Close]
BLAST of mRNA_H-akashiwo_Contig1021.3.1 vs. uniprot
Match: A0A7S3NKC2_9STRA (60S ribosomal protein L18a n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKC2_9STRA)

HSP 1 Score: 258 bits (660), Expect = 9.590e-86
Identity = 126/175 (72.00%), Postives = 145/175 (82.86%), Query Frame = 1 
Query:    1 MAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 525
            M   + YQV+GRKAPT  DP+PP+YRMK+F+PNEV+ARSRFWYFMHQ RKMKR+TGEI+DVNEI EKN  II NYGIW++YNSRSGTHNMYREYR LTLTGAVDQMYSEMAGRHR R RSIQIIRT  V  K+++R A   Y+K ++KFPL HRI R + KK R+TF ASRP TF
Sbjct:    1 MPGFKLYQVIGRKAPTPLDPSPPVYRMKIFAPNEVVARSRFWYFMHQYRKMKRSTGEILDVNEIREKNPRIIHNYGIWLRYNSRSGTHNMYREYRSLTLTGAVDQMYSEMAGRHRARPRSIQIIRTATVKDKELKRVATQMYVKPNLKFPLTHRIMRPSEKKLRTTFAASRPNTF 175
[Close]
BLAST of mRNA_H-akashiwo_Contig1021.3.1 vs. uniprot
Match: A0A5D6XXS3_9STRA (Ribosomal_L18A domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXS3_9STRA)

HSP 1 Score: 259 bits (662), Expect = 3.340e-85
Identity = 122/175 (69.71%), Postives = 151/175 (86.29%), Query Frame = 1 
Query:    1 MAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 525
            M ++RQ+QVVGRKAPT  +PNPP YRMK+F+PNEV+A+SRFWYF+HQM+KMK+TTGEI+D+NE+TEKN  I+KNYGIWI+YNSRSGTHNMY+EYRD+TL  AV+Q+Y+E+AGRHR R RSIQI+RT IVAAKD ++  V Q+  + IKFPLA RIPR A K  R+ FKA+RPTTF
Sbjct:   59 MNLIRQFQVVGRKAPTEKEPNPPAYRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILDINELTEKNKRIVKNYGIWIRYNSRSGTHNMYKEYRDVTLCSAVEQLYAELAGRHRARPRSIQIMRTAIVAAKDTKKLNVQQFHDSKIKFPLARRIPRPATKDQRTVFKANRPTTF 233
[Close]
BLAST of mRNA_H-akashiwo_Contig1021.3.1 vs. uniprot
Match: K3WCT5_GLOUD (60S ribosomal protein L18a n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCT5_GLOUD)

HSP 1 Score: 256 bits (653), Expect = 1.080e-84
Identity = 121/172 (70.35%), Postives = 148/172 (86.05%), Query Frame = 1 
Query:   10 MRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 525
            +RQ+QVVGRKAPT  +PNPP YRMK+F+PNEV+A+SRFWYF+HQM+KMK+TTGEI+DVNE+TEKN  I+ NYGIWI+YNSRSGTHNMY+EYRD+TL  AV+QMYSE+AGRHR R RSIQI+RT IVAAKD ++  V Q+  + IKFPL+HRI R + K  R+ FKA+RPTTF
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILDVNELTEKNKRIVNNYGIWIRYNSRSGTHNMYKEYRDVTLCKAVEQMYSELAGRHRARPRSIQIMRTAIVAAKDTKKLNVQQFHDSKIKFPLSHRIARPSTKNQRTVFKANRPTTF 174
[Close]
BLAST of mRNA_H-akashiwo_Contig1021.3.1 vs. uniprot
Match: A0A8K1FN02_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FN02_PYTOL)

HSP 1 Score: 256 bits (653), Expect = 1.080e-84
Identity = 119/172 (69.19%), Postives = 149/172 (86.63%), Query Frame = 1 
Query:   10 MRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 525
            +RQ+QVVGRKAPT  +PNPP YRMK+F+ NEV+A+SRFWYF+HQM+KMK+TTGEI+D+NEITEKN  ++ NYGIWI+YNSRSGTHNMY+EYRD+TL  AV+Q+Y+E+AGRHR R RSIQI+RT IVAAKD ++  V Q+  A+IKFPL+HRIPR + K +R+ FKASRP TF
Sbjct:    3 IRQFQVVGRKAPTDKEPNPPAYRMKIFAANEVLAKSRFWYFLHQMKKMKKTTGEILDINEITEKNNRVVNNYGIWIRYNSRSGTHNMYKEYRDVTLCSAVEQLYAELAGRHRARPRSIQIMRTAIVAAKDTKKGNVQQFHDANIKFPLSHRIPRPSIKNHRTVFKASRPCTF 174
[Close]
BLAST of mRNA_H-akashiwo_Contig1021.3.1 vs. uniprot
Match: A0A4D9D2V3_9STRA (60S ribosomal protein L18a n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2V3_9STRA)

HSP 1 Score: 255 bits (651), Expect = 2.410e-84
Identity = 121/174 (69.54%), Postives = 143/174 (82.18%), Query Frame = 1 
Query:    4 AVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRKMKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFPLAHRIPRAAAKKNRSTFKASRPTTF 525
            A +RQYQVVGR  PT   PNP ++RMK+F+PNEV+A+SRFWYF+HQM KMK+TTGEI+D+NE+ E+N  IIKNY IW+KY+SRSGTHNMYREYRDLTLTGAVDQ+Y+EMAGRHR RFRSIQIIRTG+V AKDV+R   MQY  + IKFPL HRI R   K  R  +KA RP T+
Sbjct:    4 ARLRQYQVVGRHVPTEAQPNPTVFRMKIFAPNEVVAKSRFWYFLHQMHKMKKTTGEILDINELVERNSRIIKNYAIWLKYDSRSGTHNMYREYRDLTLTGAVDQLYAEMAGRHRARFRSIQIIRTGVVDAKDVKRAHTMQYHNSGIKFPLPHRIQRPPNKSLRGIYKAVRPNTY 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1021.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1C9_9PHAE6.350e-9578.41Ribosomal_L18A domain-containing protein n=2 Tax=E... [more]
A0A835YZJ5_9STRA3.020e-8975.57Ribosomal protein L18 n=1 Tax=Tribonema minus TaxI... [more]
A0A1V9Z1Q2_9STRA4.980e-8869.7160S ribosomal protein L18a n=1 Tax=Achlya hypogyna... [more]
A0A7S2XX70_9STRA9.710e-8872.6760S ribosomal protein L18a n=1 Tax=Fibrocapsa japo... [more]
T0R8B2_SAPDV8.240e-8769.1460S ribosomal protein L18a n=7 Tax=Saprolegniaceae... [more]
A0A7S3NKC2_9STRA9.590e-8672.0060S ribosomal protein L18a n=1 Tax=Aureoumbra lagu... [more]
A0A5D6XXS3_9STRA3.340e-8569.71Ribosomal_L18A domain-containing protein n=1 Tax=P... [more]
K3WCT5_GLOUD1.080e-8470.3560S ribosomal protein L18a n=1 Tax=Globisporangium... [more]
A0A8K1FN02_PYTOL1.080e-8469.19Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9D2V3_9STRA2.410e-8469.5460S ribosomal protein L18a n=1 Tax=Nannochloropsis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1021contigH-akashiwo_Contig1021:46424..47416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LL36
Preferred nameRPL20B
PFAMsRibosomal_L18A
Model size534
Max annot lvl2759|Eukaryota
KEGG koko:K02882
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000902,GO:0000904,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010154,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0016049,GO:0019538,GO:0022414,GO:0022625,GO:0022626,GO:0030054,GO:0030154,GO:0031090,GO:0032501,GO:0032502,GO:0032989,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044706,GO:0048316,GO:0048468,GO:0048588,GO:0048589,GO:0048608,GO:0048731,GO:0048856,GO:0048868,GO:0048869,GO:0051704,GO:0055044,GO:0060560,GO:0061458,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons3
Evalue1.12e-95
EggNOG OGsCOG2157@1|root,KOG0829@2759|Eukaryota
Descriptionstructural constituent of ribosome
Cds size534
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387054.0575216-CDS-H-akashiwo_Contig1021:46423..466121681387054.0575216-CDS-H-akashiwo_Contig1021:46423..46612Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1021 46424..46612 +
1681387054.0702114-CDS-H-akashiwo_Contig1021:46904..470341681387054.0702114-CDS-H-akashiwo_Contig1021:46904..47034Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1021 46905..47034 +
1681387054.0803556-CDS-H-akashiwo_Contig1021:47201..474161681387054.0803556-CDS-H-akashiwo_Contig1021:47201..47416Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1021 47202..47416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1021.3.1prot_H-akashiwo_Contig1021.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1021 46424..47416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1021.3.1

>prot_H-akashiwo_Contig1021.3.1 ID=prot_H-akashiwo_Contig1021.3.1|Name=mRNA_H-akashiwo_Contig1021.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=178bp
MAVMRQYQVVGRKAPTATDPNPPLYRMKVFSPNEVIARSRFWYFMHQMRK
MKRTTGEIVDVNEITEKNCNIIKNYGIWIKYNSRSGTHNMYREYRDLTLT
GAVDQMYSEMAGRHRCRFRSIQIIRTGIVAAKDVRRPAVMQYLKADIKFP
LAHRIPRAAAKKNRSTFKASRPTTFLK*
back to top

mRNA from alignment at H-akashiwo_Contig1021:46424..47416+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1021.3.1 ID=mRNA_H-akashiwo_Contig1021.3.1|Name=mRNA_H-akashiwo_Contig1021.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=993bp|location=Sequence derived from alignment at H-akashiwo_Contig1021:46424..47416+ (Heterosigma akashiwo CCMP452)
ATGGCAGTTATGCGTCAGTATCAGGTTGTGGGCCGCAAGGCTCCCACCGC
CACCGACCCCAACCCTCCTCTCTACCGCATGAAGGTGTTCTCTCCCAATG
AGGTCATCGCTAGATCTCGTTTCTGGTACTTCATGCACCAGATGCGCAAG
ATGAAGAGAACCACTGGTGAAATTGTGGATGTGAATGAGGTAAGATTTGG
CACATAGCTTCGGCTGGAAGCACCTGGAGGAATGAGAAGGAAGAGGGCTT
TCAGCTCTTGGTACTTCATATTTCCTGTCAGGCCTCGCTTCCTGTCATCT
ATGTGTAGAACAGGTTGTCTATAAGTTTGTCAATAGAAATTTGACAAGCG
AAAAGACCCCACCACCCTGCCTTTTTCTTCAAGTTGGAGGGATTTCTTTG
AATTTATCTTTCTTTTTTAGTTGCAACGCTTTGGGTCATCTCTCAAGAGC
CTAAACTCTTGTTGTTGCTCCCCCATTCCAGATCACCGAGAAGAACTGTA
ATATCATCAAGAACTACGGCATCTGGATCAAGTACAACTCTCGCTCCGGT
ACCCACAATATGTACCGCGAGTACAGGGATCTGACCCTGACTGGCGCCGT
CGATCAGATGTGTAAGTGACCGTTTCTGGTGCTTTTTTGAACAGTTGTGG
TGGTAACACATGTACATACTGCTTCTATTCATAATCCATCACATGTAGTA
TGTGATGGATGGCTCTATATAAAACTATGATGCGCTCCAATCGTTCTTAT
CTTATTTTTTTCCCCTTTAAAAATACAGACTCTGAGATGGCTGGCCGTCA
TCGTTGCCGCTTCCGCTCTATCCAGATCATCCGCACTGGAATCGTGGCCG
CCAAGGATGTGAGGCGCCCCGCTGTTATGCAGTACCTGAAGGCTGACATC
AAGTTCCCTTTGGCTCATCGCATCCCTCGTGCTGCTGCCAAGAAAAACCG
CTCTACCTTCAAGGCTTCTCGCCCTACCACCTTCCTCAAGTAA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1021:46424..47416+

>mRNA_H-akashiwo_Contig1021.3.1 ID=mRNA_H-akashiwo_Contig1021.3.1|Name=mRNA_H-akashiwo_Contig1021.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=534bp|location=Sequence derived from alignment at H-akashiwo_Contig1021:46424..47416+ (Heterosigma akashiwo CCMP452)
ATGGCAGTTATGCGTCAGTATCAGGTTGTGGGCCGCAAGGCTCCCACCGC
CACCGACCCCAACCCTCCTCTCTACCGCATGAAGGTGTTCTCTCCCAATG
AGGTCATCGCTAGATCTCGTTTCTGGTACTTCATGCACCAGATGCGCAAG
ATGAAGAGAACCACTGGTGAAATTGTGGATGTGAATGAGATCACCGAGAA
GAACTGTAATATCATCAAGAACTACGGCATCTGGATCAAGTACAACTCTC
GCTCCGGTACCCACAATATGTACCGCGAGTACAGGGATCTGACCCTGACT
GGCGCCGTCGATCAGATGTACTCTGAGATGGCTGGCCGTCATCGTTGCCG
CTTCCGCTCTATCCAGATCATCCGCACTGGAATCGTGGCCGCCAAGGATG
TGAGGCGCCCCGCTGTTATGCAGTACCTGAAGGCTGACATCAAGTTCCCT
TTGGCTCATCGCATCCCTCGTGCTGCTGCCAAGAAAAACCGCTCTACCTT
CAAGGCTTCTCGCCCTACCACCTTCCTCAAGTAA
back to top