prot_H-akashiwo_Contig1011.11.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig1011.11.1
Unique Nameprot_H-akashiwo_Contig1011.11.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length225
Homology
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BLAST of mRNA_H-akashiwo_Contig1011.11.1 vs. uniprot
Match: A0A7S4DDR9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDR9_HETAK)

HSP 1 Score: 190 bits (482), Expect = 4.420e-54
Identity = 174/178 (97.75%), Postives = 174/178 (97.75%), Query Frame = 0 
Query:    1 MISISAADPYTQKSFEELRTEDYGKGNKGGGSTAGAFGAAASGTFSSXXXXXXXXXXXXXXXGFGAAAPAPAAPAPFSXXXXXXXXXXXXXAPGFGVFGTTTPQKPAGFSFGSTPXXXXXXXPFGATTSXXXXXXXXXXSTSATGAXXXXXXXXXXXXXXXXXXXAAPTTSGFSFGAA 178
            MISISAADPYTQKSFEELRTEDYGKGNKGGGSTAGAFGAAASGTFSSXXXXXXXXXXXXXXXGFGAAAPAPAAPAPFSXXXXXXXXXXXXXAPGFGVFGTTTPQKPAGFSFGSTPXXXXXX PFGATTSXXXXXXXXXX  SATGAXXXXXXXXXXXXXXXXXXX APTTSGFSFGAA
Sbjct:  241 MISISAADPYTQKSFEELRTEDYGKGNKGGGSTAGAFGAAASGTFSSXXXXXXXXXXXXXXXGFGAAAPAPAAPAPFSXXXXXXXXXXXXXAPGFGVFGTTTPQKPAGFSFGSTPXXXXXXSPFGATTSXXXXXXXXXXXXSATGAXXXXXXXXXXXXXXXXXXXXAPTTSGFSFGAA 418
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BLAST of mRNA_H-akashiwo_Contig1011.11.1 vs. uniprot
Match: A0A7S3Y7J1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7J1_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 6.880e-14
Identity = 90/115 (78.26%), Postives = 91/115 (79.13%), Query Frame = 0 
Query:   64 FGAAAPAPAAPAPFSXXXXXXXXXXXXXAPGFGVFGTTTPQKPAGFSFGSTPXXXXXXXPFGATTSXXXXXXXXXXSTSATGAXXXXXXXXXXXXXXXXXXXAAPTTSGFSFGAA 178
            FGAA PA +APAP               APGFGVFGTTTPQKPAGFSFGST XXXXXXX   ATTSXXXXXXXXXX  SATGAXXXXXXXXXXXXXXXXXXX APTTSGFSFGAA
Sbjct:   66 FGAATPAFSAPAP---------------APGFGVFGTTTPQKPAGFSFGSTXXXXXXXXXXXATTSXXXXXXXXXXXXSATGAXXXXXXXXXXXXXXXXXXXXAPTTSGFSFGAA 165
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BLAST of mRNA_H-akashiwo_Contig1011.11.1 vs. uniprot
Match: A0A7S2YGG7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YGG7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.970e-5
Identity = 36/76 (47.37%), Postives = 40/76 (52.63%), Query Frame = 0 
Query:    1 MISISAADPYTQKSFEELRTEDYGKGNKGGGSTAGAFGAAASGTFSSXXXXXXXXXXXXXXXGFGAAAPAPAAPAP 76
            ++SI+A   Y  KSFEELR EDY +GNKG  STA A GA A                     GFG  AP PAAPAP
Sbjct:  240 LLSITAMQQYENKSFEELRFEDYSQGNKGQASTAPAAGAPA---------------------GFGFGAPQPAAPAP 294
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1011.11.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4DDR9_HETAK4.420e-5497.75Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y7J1_HETAK6.880e-1478.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2YGG7_9STRA1.970e-547.37Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.2360coord: 1..28
e-value: 4.6E-8
score: 35.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..32
IPR037665Nucleoporin peptidase S59-likePANTHERPTHR23198NUCLEOPORINcoord: 3..223
IPR037637Nuclear pore complex protein NUP98-NUP96PANTHERPTHR23198:SF17NUCLEAR PORE COMPLEX PROTEIN NUP98-NUP96coord: 3..223

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1011contigH-akashiwo_Contig1011:288411..289085 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1011.11.1mRNA_H-akashiwo_Contig1011.11.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig1011 288411..289085 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig1011.11.1 ID=prot_H-akashiwo_Contig1011.11.1|Name=mRNA_H-akashiwo_Contig1011.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=225bp
MISISAADPYTQKSFEELRTEDYGKGNKGGGSTAGAFGAAASGTFSSTFG
APAAATGTSPFGGFGAAAPAPAAPAPFSFGAATPAFGAPAPAPGFGVFGT
TTPQKPAGFSFGSTPAPAPGASPFGATTSPFGLTTGAFGSTSATGAFSFG
ATPAPAPGASPFGAAAAPTTSGFSFGAAAPAPATSGFSFGAAAPAPFSFG
AATPAFSAPAPAPGFGVFGTTTPQK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037665Nucleoporin_S59-like
IPR037637NUP98-NUP96